beads

Files

T

Bo 6a4a6170e7 fix(sync): add --sparse flag to git add for worktree compatibility (#1143 )

Fixes #1076.

When git worktrees have sparse-checkout enabled, git add operations can
fail with 'outside of sparse-checkout cone' errors. Adding the --sparse
flag allows git to stage files outside the sparse-checkout cone.

Changes:
- Add --sparse flag to git add in daemon_sync_branch.go (line 165)
- Add --sparse flag to git add in migrate_sync.go (line 343)
- Add --sparse flag to git add in sync_branch.go (line 308)
- Add --sparse flag to git add in worktree.go (line 732)

All changes include comments referencing #1076 for traceability.

2026-01-19 10:21:12 -08:00

doctor

Fix doctor DB-JSONL sync check to exclude ephemeral wisps (#1144 )

2026-01-19 10:11:23 -08:00

setup

…

templates/hooks

fix(hooks): Fix infinite recursion and update templates for Dolt hooks

2026-01-16 14:33:08 -08:00

testdata

…

.gitattributes

…

@AGENTS.md

…

activity_test.go

…

activity.go

…

actor_test.go

…

admin_aliases.go

feat(compact): add --dolt flag for Dolt garbage collection

2026-01-17 01:54:50 -08:00

admin.go

…

agent_routing_test.go

…

agent_test.go

…

agent.go

…

AGENTS.md

…

audit.go

…

autoflush_test.go

…

autoflush.go

Fix issue-prefix config fallback to config.yaml (GH#1145) (#1146 )

2026-01-19 10:11:19 -08:00

autoimport_test.go

…

autoimport.go

fix(context): complete RepoContext migration for remaining sync files (#1114 )

2026-01-15 19:23:07 -08:00

autostart_test.go

…

branch.go

feat(storage): add VersionedStorage interface with history/diff/branch operations

2026-01-17 01:55:16 -08:00

cleanup.go

…

cli_coverage_show_test.go

…

cli_fast_test.go

…

close.go

feat(close): add -m as alias for --reason

2026-01-17 03:48:51 -08:00

comments_test.go

…

comments.go

…

compact_rpc.go

…

compact_test.go

…

compact_tombstone.go

…

compact.go

feat(compact): add --dolt flag for Dolt garbage collection

2026-01-17 01:54:50 -08:00

completions_test.go

fix: allow shell completions to work without a database (#1118 )

2026-01-15 19:22:55 -08:00

completions.go

…

config_test.go

feat(config): add validate command for sync config

2026-01-17 14:02:28 -08:00

config.go

feat(config): add validate command for sync config

2026-01-17 14:02:28 -08:00

context_test.go

…

context.go

…

contributor_routing_e2e_test.go

…

cook_test.go

…

cook.go

…

count.go

…

create_form_test.go

…

create_form.go

feat(types): add "enhancement" as alias for "feature" type

2026-01-16 15:44:33 -08:00

create_notes_test.go

…

create_test.go

…

create.go

Fix issue-prefix config fallback to config.yaml (GH#1145) (#1146 )

2026-01-19 10:11:19 -08:00

daemon_autoimport_test.go

…

daemon_autopull_yaml_test.go

…

daemon_autostart_unit_test.go

chore: remove placeholder comment in test

2026-01-17 02:51:06 -08:00

daemon_autostart.go

fix(cli): suppress no-git-repo note with --quiet flag

2026-01-17 00:16:05 -08:00

daemon_basics_test.go

…

daemon_config.go

…

daemon_crash_test.go

…

daemon_debouncer_test.go

…

daemon_debouncer.go

fix(daemon): Fix double-unlock risk in debouncer on action panic (#1140 )

2026-01-19 10:08:53 -08:00

daemon_event_loop.go

…

daemon_health_freebsd.go

…

daemon_health_solaris.go

…

daemon_health_unix.go

…

daemon_health_wasm.go

…

daemon_health_windows.go

…

daemon_integration_test.go

…

daemon_lifecycle.go

…

daemon_local_test.go

…

daemon_lock_test.go

…

daemon_lock_unix.go

…

daemon_lock_wasm.go

…

daemon_lock_windows.go

…

daemon_lock.go

…

daemon_logger.go

…

daemon_parent_test.go

…

daemon_rotation_test.go

…

daemon_server.go

…

daemon_socket_test.go

…

daemon_start.go

…

daemon_status.go

…

daemon_sync_branch_test.go

…

daemon_sync_branch.go

fix(sync): add --sparse flag to git add for worktree compatibility (#1143 )

2026-01-19 10:21:12 -08:00

daemon_sync_state.go

fix(daemon): Eliminate race condition in sync state load-modify-save (#1139 )

2026-01-19 10:08:41 -08:00

daemon_sync_test.go

…

daemon_sync.go

…

daemon_test.go

…

daemon_unix_test.go

…

daemon_unix.go

…

daemon_wasm.go

…

daemon_watcher_platform_test.go

…

daemon_watcher_test.go

…

daemon_watcher.go

…

daemon_windows.go

…

daemon.go

feat(storage): add --backend flag for Dolt backend selection

2026-01-14 21:42:31 -08:00

daemons_test.go

…

daemons.go

…

defer.go

…

delete_rpc_test.go

…

delete_test.go

…

delete.go

…

deletion_tracking_test.go

…

deletion_tracking.go

…

dep_test.go

…

dep.go

…

detect_pollution.go

…

diff.go

feat(storage): add VersionedStorage interface with history/diff/branch operations

2026-01-17 01:55:16 -08:00

direct_mode_test.go

…

direct_mode.go

…

docs.md

…

doctor_fix.go

…

doctor_health.go

…

doctor_pollution.go

…

doctor_repair_chaos_test.go

…

doctor_repair_test.go

…

doctor_test.go

…

doctor.go

fix(doctor): improve diagnostic fix message output (#1187 )

2026-01-19 10:10:57 -08:00

dual_mode_test.go

…

duplicate.go

…

duplicates_test.go

fix(duplicates): use combined weight (dependents + dependencies) for merge target selection (GH#1022)

2026-01-17 03:44:13 -08:00

duplicates.go

fix(duplicates): use combined weight (dependents + dependencies) for merge target selection (GH#1022)

2026-01-17 03:44:13 -08:00

edit.go

…

epic_test.go

…

epic.go

…

errors.go

…

export_import_test.go

…

export_integrity_integration_test.go

…

export_mtime_test.go

…

export_obsidian_test.go

…

export_obsidian.go

…

export_staleness_test.go

…

export_test.go

…

export.go

…

external_ref_test.go

…

flags.go

…

flush_manager_test.go

…

flush_manager.go

…

fork_protection_test.go

…

fork_protection.go

…

formula.go

…

gate_discover.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

gate_test.go

…

gate.go

…

git_sync_test.go

…

git_test_helpers.go

…

graph_test.go

…

graph.go

…

helpers_test.go

…

history.go

feat(storage): add VersionedStorage interface with history/diff/branch operations

2026-01-17 01:55:16 -08:00

hook.go

feat(hook): implement per-worktree export state tracking (Design Part 21)

2026-01-17 10:46:44 -08:00

hooks_test.go

fix(hooks): prevent bd hooks install --chain from destroying user's original hook

2026-01-17 08:44:30 +01:00

hooks.go

fix(hooks): prevent bd hooks install --chain from destroying user's original hook

2026-01-17 08:44:30 +01:00

human.go

…

import_bug_test.go

…

import_cancellation_test.go

…

import_helpers_test.go

…

import_idempotent_test.go

…

import_mtime_test.go

…

import_multipart_id_test.go

…

import_profile_test.go

…

import_shared.go

…

import_uncommitted_test.go

…

import.go

fix(context): complete RepoContext migration for remaining sync files (#1114 )

2026-01-15 19:23:07 -08:00

info_test.go

…

info.go

chore(release): bump version to 0.48.0

2026-01-17 04:36:41 -08:00

init_agent.go

…

init_contributor.go

…

init_git_hooks.go

Fix git hooks not working in worktrees (#1126 )

2026-01-16 12:01:43 -08:00

init_hooks_test.go

…

init_stealth_test.go

fix(init): use --git-common-dir for worktree exclude paths (GH#1053)

2026-01-17 02:29:01 -08:00

init_stealth.go

fix(init): use --git-common-dir for worktree exclude paths (GH#1053)

2026-01-17 02:29:01 -08:00

init_team.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

init_templates.go

fix(test): fix TestInitNoDbMode for no-db mode config persistence

2026-01-15 11:37:57 -08:00

init_test.go

fix: set git index flags on init when sync-branch is configured (#1158 )

2026-01-19 10:11:16 -08:00

init.go

fix: set git index flags on init when sync-branch is configured (#1158 )

2026-01-19 10:11:16 -08:00

integrity_content_test.go

…

integrity_test.go

…

integrity.go

…

jira_test.go

…

jira.go

…

jsonl_integrity_test.go

…

label_test.go

…

label.go

…

last_touched_test.go

…

last_touched.go

…

linear_conflict.go

…

linear_sync.go

…

linear_test.go

…

linear.go

…

lint.go

…

list_helpers_test.go

…

list_test.go

…

list.go

…

mail.go

…

main_daemon.go

…

main_errors.go

…

main_help.go

…

main_test.go

…

main.go

fix(staleness): skip auto-import when store is read-only (GH#1089)

2026-01-18 18:25:50 -08:00

markdown_test.go

…

markdown.go

…

merge_security_test.go

…

merge_slot.go

fix(merge-slot): use daemon RPC to get issue_prefix in daemon mode

2026-01-17 03:44:02 -08:00

merge.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

migrate_hash_ids_test.go

…

migrate_hash_ids.go

…

migrate_issues.go

…

migrate_sync_test.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

migrate_sync.go

fix(sync): add --sparse flag to git add for worktree compatibility (#1143 )

2026-01-19 10:21:12 -08:00

migrate_test.go

…

migrate_tombstones.go

…

migrate.go

…

mol_bond.go

…

mol_burn.go

…

mol_current.go

…

mol_distill.go

…

mol_progress.go

…

mol_ready_gated_test.go

feat(types): remove Gas Town types from core built-in types

2026-01-17 05:07:11 -08:00

mol_ready_gated.go

…

mol_show.go

…

mol_squash.go

…

mol_stale.go

…

mol_test.go

…

mol.go

…

move_test.go

…

move.go

…

nodb_test.go

…

nodb.go

…

onboard_test.go

…

onboard.go

…

orphans_test.go

…

orphans.go

…

output_test.go

…

periodic_remote_sync_test.go

…

pour.go

…

preflight_test.go

…

preflight.go

…

prime_test.go

…

prime.go

docs(prime): warn agents about bd edit opening interactive editor

2026-01-17 00:24:34 -08:00

quick.go

feat(types): add "enhancement" as alias for "feature" type

2026-01-16 15:44:33 -08:00

quickstart.go

…

readonly_test.go

…

ready_test.go

…

ready.go

…

refile.go

…

reinit_test.go

fix(context): complete RepoContext migration for remaining sync files (#1114 )

2026-01-15 19:23:07 -08:00

relate_test.go

…

relate.go

…

rename_prefix_jsonl_update_test.go

…

rename_prefix_repair_test.go

…

rename_prefix_test.go

…

rename_prefix.go

…

reopen_test.go

…

reopen.go

…

repair_deps_test.go

…

repair_orphans_test.go

…

repair.go

…

repo.go

…

reset_test.go

…

reset.go

Fix git hooks not working in worktrees (#1126 )

2026-01-16 12:01:43 -08:00

resolve_conflicts_test.go

…

resolve_conflicts.go

…

restore_test.go

…

restore.go

…

routed.go

…

sandbox_test.go

…

sandbox_unix.go

…

sandbox_windows.go

…

scripttest_test.go

…

search_test.go

…

search.go

…

setup.go

…

ship.go

…

show_test.go

fix(config): remove duplicate declarations and fix test failures (#1160 )

2026-01-19 10:11:14 -08:00

show_thread.go

…

show_unit_helpers_test.go

feat(types): remove Gas Town types from core built-in types

2026-01-17 05:07:11 -08:00

show_unit_helpers.go

…

show.go

feat(storage): add VersionedStorage interface with history/diff/branch operations

2026-01-17 01:55:16 -08:00

simple_helpers_test.go

…

slot.go

…

snapshot_manager.go

…

stale_test.go

…

stale.go

…

staleness_test.go

…

staleness.go

fix(staleness): skip auto-import when store is read-only (GH#1089)

2026-01-18 18:25:50 -08:00

state_test.go

…

state.go

…

status_test.go

…

status.go

fix(context): complete RepoContext migration for remaining sync files (#1114 )

2026-01-15 19:23:07 -08:00

swarm.go

…

sync_branch_priority_test.go

…

sync_branch.go

fix(sync): add --sparse flag to git add for worktree compatibility (#1143 )

2026-01-19 10:21:12 -08:00

sync_check.go

fix(context): complete RepoContext migration for remaining sync files (#1114 )

2026-01-15 19:23:07 -08:00

sync_cwd_test.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

sync_export.go

fix(sync): Update jsonl_file_hash in finalizeExport to prevent spurious warnings (#1113 )

2026-01-15 19:23:09 -08:00

sync_external_test.go

…

sync_git_test.go

fix(sync): remove orphaned restoreBeadsDirFromBranch function (#1121 )

2026-01-15 19:22:52 -08:00

sync_git.go

fix(sync): remove orphaned restoreBeadsDirFromBranch function (#1121 )

2026-01-15 19:22:52 -08:00

sync_helpers_more_test.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

sync_import.go

fix(context): complete RepoContext migration for remaining sync files (#1114 )

2026-01-15 19:23:07 -08:00

sync_local_only_test.go

…

sync_manual_test.go

feat(sync): implement interactive conflict resolution for manual strategy

2026-01-17 14:02:47 -08:00

sync_manual.go

feat(sync): implement interactive conflict resolution for manual strategy

2026-01-17 14:02:47 -08:00

sync_merge_test.go

…

sync_merge.go

…

sync_mode_test.go

feat(sync): wire up sync.mode config to change sync behavior

2026-01-18 10:36:20 -08:00

sync_mode.go

feat(sync): wire up sync.mode config to change sync behavior

2026-01-18 10:36:20 -08:00

sync_modes_test.go

fix: Validate sync-branch at config-time and runtime (closes #1166 ) (#1168 )

2026-01-19 10:11:06 -08:00

sync_test.go

…

sync_validation_test.go

…

sync.go

fix(config): remove duplicate declarations and fix test failures (#1160 )

2026-01-19 10:11:14 -08:00

template_test.go

…

template.go

…

test_guard_helpers.go

…

test_helpers_test.go

feat(types): remove Gas Town types from core built-in types

2026-01-17 05:07:11 -08:00

test_repo_beads_guard_test.go

…

test_wait_helper.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

thanks.go

…

thread_test.go

…

tips_example_test.go

…

tips_test.go

…

tips.go

…

types.go

feat(types): remove Gas Town types from core built-in types

2026-01-17 05:07:11 -08:00

undefer.go

…

update.go

fix(types): consolidate enhancement alias and fix update command

2026-01-16 16:02:51 -08:00

upgrade.go

…

utils_unit_test.go

…

vc.go

feat(storage): add VersionedStorage interface with history/diff/branch operations

2026-01-17 01:55:16 -08:00

version_test.go

…

version_tracking_test.go

…

version_tracking.go

…

version.go

chore(release): bump version to 0.48.0

2026-01-17 04:36:41 -08:00

where.go

…

wisp.go

…

worktree_cmd_test.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

worktree_cmd.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

worktree_daemon_test.go

…

worktree_test.go

feat(context): centralize RepoContext API for git operations (#1102 )

2026-01-15 07:55:08 -08:00

worktree.go

…