Implements automatic fix capability for bd doctor with user confirmation
and security hardening.
Features:
- Organizes fix implementations under doctor/fix/ directory structure
- Shows all fixable issues and prompts for confirmation (Y/n) before applying
- Provides clear output about what was fixed and any errors encountered
- Re-runs diagnostics after fixes to show updated state
- Each fix is idempotent and safe to run multiple times
Automatic fixes implemented:
- Git hooks (runs bd hooks install)
- Daemon health issues (runs bd daemons killall)
- DB-JSONL sync problems (runs bd sync --import-only)
- File permissions (fixes .beads/ and database permissions)
- Database version mismatches (runs bd migrate)
- Schema compatibility issues (runs bd migrate)
- Gitignore updates (writes canonical template)
Security improvements:
- Prevents command injection by using os.Executable() instead of PATH lookup
- Prevents path traversal attacks with workspace validation
- Fixes race conditions by using cmd.Dir instead of os.Chdir()
- Corrects file permission logic (proper bit masking)
- Validates all operations run in beads workspaces only
Files changed:
- cmd/bd/doctor.go: Enhanced applyFixes() with confirmation and better UX
- cmd/bd/doctor/gitignore.go: Fixed permissions (0600 → 0644)
- cmd/bd/doctor/fix/common.go: Security helpers (getBdBinary, validateBeadsWorkspace)
- cmd/bd/doctor/fix/hooks.go: Git hooks fix
- cmd/bd/doctor/fix/daemon.go: Daemon health fix
- cmd/bd/doctor/fix/sync.go: DB-JSONL sync fix
- cmd/bd/doctor/fix/permissions.go: File permissions fix
- cmd/bd/doctor/fix/migrate.go: Database migration fixes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
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