Files
beads/internal/rpc/protocol.go
beads/crew/emma 829c8d1caf feat: add --notes flag to bd create command (GH#830)
Add --notes flag to bd create command, enabling agents to set notes
during issue creation instead of requiring a separate update command.

Motivation: AI agents repeatedly tried to use --notes with bd create.
Context is fresh at creation time - forcing a two-step process means
context loss or workflow interruption.

Changes:
- cmd/bd/flags.go: Added --notes flag to common issue flags
- cmd/bd/create.go: Read and pass notes in both RPC and direct modes
- cmd/bd/update.go: Removed duplicate --notes flag definition
- internal/rpc/protocol.go: Added Notes field to CreateArgs
- internal/rpc/server_issues_epics.go: Process Notes in handleCreate
- cmd/bd/create_notes_test.go: Comprehensive test coverage
- website/docs/cli-reference/issues.md: Documentation

Also adds gitignore entries for Augment AI and .beads/redirect.

Co-authored-by: Leon Letto <lettol@vmware.com>
2026-01-01 10:53:59 -08:00

613 lines
25 KiB
Go

package rpc
import (
"encoding/json"
"time"
"github.com/steveyegge/beads/internal/types"
)
// Operation constants for all bd commands
const (
OpPing = "ping"
OpStatus = "status"
OpHealth = "health"
OpMetrics = "metrics"
OpCreate = "create"
OpUpdate = "update"
OpClose = "close"
OpList = "list"
OpCount = "count"
OpShow = "show"
OpReady = "ready"
OpBlocked = "blocked"
OpStale = "stale"
OpStats = "stats"
OpDepAdd = "dep_add"
OpDepRemove = "dep_remove"
OpDepTree = "dep_tree"
OpLabelAdd = "label_add"
OpLabelRemove = "label_remove"
OpCommentList = "comment_list"
OpCommentAdd = "comment_add"
OpBatch = "batch"
OpResolveID = "resolve_id"
OpCompact = "compact"
OpCompactStats = "compact_stats"
OpExport = "export"
OpImport = "import"
OpEpicStatus = "epic_status"
OpGetMutations = "get_mutations"
OpGetMoleculeProgress = "get_molecule_progress"
OpShutdown = "shutdown"
OpDelete = "delete"
OpGetWorkerStatus = "get_worker_status"
OpGetConfig = "get_config"
OpMolStale = "mol_stale"
// Gate operations
OpGateCreate = "gate_create"
OpGateList = "gate_list"
OpGateShow = "gate_show"
OpGateClose = "gate_close"
OpGateWait = "gate_wait"
)
// Request represents an RPC request from client to daemon
type Request struct {
Operation string `json:"operation"`
Args json.RawMessage `json:"args"`
Actor string `json:"actor,omitempty"`
RequestID string `json:"request_id,omitempty"`
Cwd string `json:"cwd,omitempty"` // Working directory for database discovery
ClientVersion string `json:"client_version,omitempty"` // Client version for compatibility checks
ExpectedDB string `json:"expected_db,omitempty"` // Expected database path for validation (absolute)
}
// Response represents an RPC response from daemon to client
type Response struct {
Success bool `json:"success"`
Data json.RawMessage `json:"data,omitempty"`
Error string `json:"error,omitempty"`
}
// CreateArgs represents arguments for the create operation
type CreateArgs struct {
ID string `json:"id,omitempty"`
Parent string `json:"parent,omitempty"` // Parent ID for hierarchical issues
Title string `json:"title"`
Description string `json:"description,omitempty"`
IssueType string `json:"issue_type"`
Priority int `json:"priority"`
Design string `json:"design,omitempty"`
AcceptanceCriteria string `json:"acceptance_criteria,omitempty"`
Notes string `json:"notes,omitempty"`
Assignee string `json:"assignee,omitempty"`
ExternalRef string `json:"external_ref,omitempty"` // Link to external issue trackers
EstimatedMinutes *int `json:"estimated_minutes,omitempty"` // Time estimate in minutes
Labels []string `json:"labels,omitempty"`
Dependencies []string `json:"dependencies,omitempty"`
// Waits-for dependencies
WaitsFor string `json:"waits_for,omitempty"` // Spawner issue ID to wait for
WaitsForGate string `json:"waits_for_gate,omitempty"` // Gate type: all-children or any-children
// Messaging fields
Sender string `json:"sender,omitempty"` // Who sent this (for messages)
Ephemeral bool `json:"ephemeral,omitempty"` // If true, not exported to JSONL; bulk-deleted when closed
RepliesTo string `json:"replies_to,omitempty"` // Issue ID for conversation threading
// ID generation
IDPrefix string `json:"id_prefix,omitempty"` // Override prefix for ID generation (mol, eph, etc.)
CreatedBy string `json:"created_by,omitempty"` // Who created the issue
// Molecule type (for swarm coordination)
MolType string `json:"mol_type,omitempty"` // swarm, patrol, or work (default)
// Agent identity fields (only valid when IssueType == "agent")
RoleType string `json:"role_type,omitempty"` // polecat|crew|witness|refinery|mayor|deacon
Rig string `json:"rig,omitempty"` // Rig name (empty for town-level agents)
// Event fields (only valid when IssueType == "event")
EventCategory string `json:"event_category,omitempty"` // Namespaced category (e.g., patrol.muted, agent.started)
EventActor string `json:"event_actor,omitempty"` // Entity URI who caused this event
EventTarget string `json:"event_target,omitempty"` // Entity URI or bead ID affected
EventPayload string `json:"event_payload,omitempty"` // Event-specific JSON data
}
// UpdateArgs represents arguments for the update operation
type UpdateArgs struct {
ID string `json:"id"`
Title *string `json:"title,omitempty"`
Description *string `json:"description,omitempty"`
Status *string `json:"status,omitempty"`
Priority *int `json:"priority,omitempty"`
Design *string `json:"design,omitempty"`
AcceptanceCriteria *string `json:"acceptance_criteria,omitempty"`
Notes *string `json:"notes,omitempty"`
Assignee *string `json:"assignee,omitempty"`
ExternalRef *string `json:"external_ref,omitempty"` // Link to external issue trackers
EstimatedMinutes *int `json:"estimated_minutes,omitempty"` // Time estimate in minutes
IssueType *string `json:"issue_type,omitempty"` // Issue type (bug|feature|task|epic|chore)
AddLabels []string `json:"add_labels,omitempty"`
RemoveLabels []string `json:"remove_labels,omitempty"`
SetLabels []string `json:"set_labels,omitempty"`
// Messaging fields
Sender *string `json:"sender,omitempty"` // Who sent this (for messages)
Ephemeral *bool `json:"ephemeral,omitempty"` // If true, not exported to JSONL; bulk-deleted when closed
RepliesTo *string `json:"replies_to,omitempty"` // Issue ID for conversation threading
// Graph link fields
RelatesTo *string `json:"relates_to,omitempty"` // JSON array of related issue IDs
DuplicateOf *string `json:"duplicate_of,omitempty"` // Canonical issue ID if duplicate
SupersededBy *string `json:"superseded_by,omitempty"` // Replacement issue ID if obsolete
// Pinned field
Pinned *bool `json:"pinned,omitempty"` // If true, issue is a persistent context marker
// Reparenting field
Parent *string `json:"parent,omitempty"` // New parent issue ID (reparents the issue)
// Agent slot fields
HookBead *string `json:"hook_bead,omitempty"` // Current work on agent's hook (0..1)
RoleBead *string `json:"role_bead,omitempty"` // Role definition bead for agent
// Agent state fields
AgentState *string `json:"agent_state,omitempty"` // Agent state (idle|running|stuck|stopped|dead)
LastActivity *bool `json:"last_activity,omitempty"` // If true, update last_activity to now
// Agent identity fields
RoleType *string `json:"role_type,omitempty"` // polecat|crew|witness|refinery|mayor|deacon
Rig *string `json:"rig,omitempty"` // Rig name (empty for town-level agents)
// Event fields (only valid when IssueType == "event")
EventCategory *string `json:"event_category,omitempty"` // Namespaced category (e.g., patrol.muted, agent.started)
EventActor *string `json:"event_actor,omitempty"` // Entity URI who caused this event
EventTarget *string `json:"event_target,omitempty"` // Entity URI or bead ID affected
EventPayload *string `json:"event_payload,omitempty"` // Event-specific JSON data
// Work queue claim operation
Claim bool `json:"claim,omitempty"` // If true, atomically claim issue (set assignee+status, fail if already claimed)
}
// CloseArgs represents arguments for the close operation
type CloseArgs struct {
ID string `json:"id"`
Reason string `json:"reason,omitempty"`
Session string `json:"session,omitempty"` // Claude Code session ID that closed this issue
SuggestNext bool `json:"suggest_next,omitempty"` // Return newly unblocked issues (GH#679)
}
// CloseResult is returned when SuggestNext is true (GH#679)
// When SuggestNext is false, just the closed issue is returned for backward compatibility
type CloseResult struct {
Closed *types.Issue `json:"closed"` // The issue that was closed
Unblocked []*types.Issue `json:"unblocked,omitempty"` // Issues newly unblocked by closing
}
// DeleteArgs represents arguments for the delete operation
type DeleteArgs struct {
IDs []string `json:"ids"` // Issue IDs to delete
Force bool `json:"force,omitempty"` // Force deletion without confirmation
DryRun bool `json:"dry_run,omitempty"` // Preview mode
Cascade bool `json:"cascade,omitempty"` // Recursively delete dependents
Reason string `json:"reason,omitempty"` // Reason for deletion
}
// ListArgs represents arguments for the list operation
type ListArgs struct {
Query string `json:"query,omitempty"`
Status string `json:"status,omitempty"`
Priority *int `json:"priority,omitempty"`
IssueType string `json:"issue_type,omitempty"`
Assignee string `json:"assignee,omitempty"`
Label string `json:"label,omitempty"` // Deprecated: use Labels
Labels []string `json:"labels,omitempty"` // AND semantics
LabelsAny []string `json:"labels_any,omitempty"` // OR semantics
IDs []string `json:"ids,omitempty"` // Filter by specific issue IDs
Limit int `json:"limit,omitempty"`
// Pattern matching
TitleContains string `json:"title_contains,omitempty"`
DescriptionContains string `json:"description_contains,omitempty"`
NotesContains string `json:"notes_contains,omitempty"`
// Date ranges (ISO 8601 format)
CreatedAfter string `json:"created_after,omitempty"`
CreatedBefore string `json:"created_before,omitempty"`
UpdatedAfter string `json:"updated_after,omitempty"`
UpdatedBefore string `json:"updated_before,omitempty"`
ClosedAfter string `json:"closed_after,omitempty"`
ClosedBefore string `json:"closed_before,omitempty"`
// Empty/null checks
EmptyDescription bool `json:"empty_description,omitempty"`
NoAssignee bool `json:"no_assignee,omitempty"`
NoLabels bool `json:"no_labels,omitempty"`
// Priority range
PriorityMin *int `json:"priority_min,omitempty"`
PriorityMax *int `json:"priority_max,omitempty"`
// Pinned filtering
Pinned *bool `json:"pinned,omitempty"`
// Template filtering
IncludeTemplates bool `json:"include_templates,omitempty"`
// Parent filtering
ParentID string `json:"parent_id,omitempty"`
// Ephemeral filtering
Ephemeral *bool `json:"ephemeral,omitempty"`
// Molecule type filtering
MolType string `json:"mol_type,omitempty"`
// Status exclusion (for default non-closed behavior, GH#788)
ExcludeStatus []string `json:"exclude_status,omitempty"`
}
// CountArgs represents arguments for the count operation
type CountArgs struct {
// Supports all the same filters as ListArgs
Query string `json:"query,omitempty"`
Status string `json:"status,omitempty"`
Priority *int `json:"priority,omitempty"`
IssueType string `json:"issue_type,omitempty"`
Assignee string `json:"assignee,omitempty"`
Labels []string `json:"labels,omitempty"`
LabelsAny []string `json:"labels_any,omitempty"`
IDs []string `json:"ids,omitempty"`
// Pattern matching
TitleContains string `json:"title_contains,omitempty"`
DescriptionContains string `json:"description_contains,omitempty"`
NotesContains string `json:"notes_contains,omitempty"`
// Date ranges
CreatedAfter string `json:"created_after,omitempty"`
CreatedBefore string `json:"created_before,omitempty"`
UpdatedAfter string `json:"updated_after,omitempty"`
UpdatedBefore string `json:"updated_before,omitempty"`
ClosedAfter string `json:"closed_after,omitempty"`
ClosedBefore string `json:"closed_before,omitempty"`
// Empty/null checks
EmptyDescription bool `json:"empty_description,omitempty"`
NoAssignee bool `json:"no_assignee,omitempty"`
NoLabels bool `json:"no_labels,omitempty"`
// Priority range
PriorityMin *int `json:"priority_min,omitempty"`
PriorityMax *int `json:"priority_max,omitempty"`
// Grouping option (only one can be specified)
GroupBy string `json:"group_by,omitempty"` // "status", "priority", "type", "assignee", "label"
}
// ShowArgs represents arguments for the show operation
type ShowArgs struct {
ID string `json:"id"`
}
// ResolveIDArgs represents arguments for the resolve_id operation
type ResolveIDArgs struct {
ID string `json:"id"`
}
// ReadyArgs represents arguments for the ready operation
type ReadyArgs struct {
Assignee string `json:"assignee,omitempty"`
Unassigned bool `json:"unassigned,omitempty"`
Priority *int `json:"priority,omitempty"`
Type string `json:"type,omitempty"`
Limit int `json:"limit,omitempty"`
SortPolicy string `json:"sort_policy,omitempty"`
Labels []string `json:"labels,omitempty"`
LabelsAny []string `json:"labels_any,omitempty"`
ParentID string `json:"parent_id,omitempty"` // Filter to descendants of this bead/epic
MolType string `json:"mol_type,omitempty"` // Filter by molecule type: swarm, patrol, or work
}
// BlockedArgs represents arguments for the blocked operation
type BlockedArgs struct {
ParentID string `json:"parent_id,omitempty"` // Filter to descendants of this bead/epic
}
// StaleArgs represents arguments for the stale command
type StaleArgs struct {
Days int `json:"days,omitempty"`
Status string `json:"status,omitempty"`
Limit int `json:"limit,omitempty"`
}
// DepAddArgs represents arguments for adding a dependency
type DepAddArgs struct {
FromID string `json:"from_id"`
ToID string `json:"to_id"`
DepType string `json:"dep_type"`
}
// DepRemoveArgs represents arguments for removing a dependency
type DepRemoveArgs struct {
FromID string `json:"from_id"`
ToID string `json:"to_id"`
DepType string `json:"dep_type,omitempty"`
}
// DepTreeArgs represents arguments for the dep tree operation
type DepTreeArgs struct {
ID string `json:"id"`
MaxDepth int `json:"max_depth,omitempty"`
}
// LabelAddArgs represents arguments for adding a label
type LabelAddArgs struct {
ID string `json:"id"`
Label string `json:"label"`
}
// LabelRemoveArgs represents arguments for removing a label
type LabelRemoveArgs struct {
ID string `json:"id"`
Label string `json:"label"`
}
// CommentListArgs represents arguments for listing comments on an issue
type CommentListArgs struct {
ID string `json:"id"`
}
// CommentAddArgs represents arguments for adding a comment to an issue
type CommentAddArgs struct {
ID string `json:"id"`
Author string `json:"author"`
Text string `json:"text"`
}
// EpicStatusArgs represents arguments for the epic status operation
type EpicStatusArgs struct {
EligibleOnly bool `json:"eligible_only,omitempty"`
}
// PingResponse is the response for a ping operation
type PingResponse struct {
Message string `json:"message"`
Version string `json:"version"`
}
// StatusResponse represents the daemon status metadata
type StatusResponse struct {
Version string `json:"version"` // Server/daemon version
WorkspacePath string `json:"workspace_path"` // Absolute path to workspace root
DatabasePath string `json:"database_path"` // Absolute path to database file
SocketPath string `json:"socket_path"` // Path to Unix socket
PID int `json:"pid"` // Process ID
UptimeSeconds float64 `json:"uptime_seconds"` // Time since daemon started
LastActivityTime string `json:"last_activity_time"` // ISO 8601 timestamp of last request
ExclusiveLockActive bool `json:"exclusive_lock_active"` // Whether an exclusive lock is held
ExclusiveLockHolder string `json:"exclusive_lock_holder,omitempty"` // Lock holder name if active
// Daemon configuration
AutoCommit bool `json:"auto_commit"` // Whether auto-commit is enabled
AutoPush bool `json:"auto_push"` // Whether auto-push is enabled
AutoPull bool `json:"auto_pull"` // Whether auto-pull is enabled (periodic remote sync)
LocalMode bool `json:"local_mode"` // Whether running in local-only mode (no git)
SyncInterval string `json:"sync_interval"` // Sync interval (e.g., "5s")
DaemonMode string `json:"daemon_mode"` // Sync mode: "poll" or "events"
}
// HealthResponse is the response for a health check operation
type HealthResponse struct {
Status string `json:"status"` // "healthy", "degraded", "unhealthy"
Version string `json:"version"` // Server/daemon version
ClientVersion string `json:"client_version,omitempty"` // Client version from request
Compatible bool `json:"compatible"` // Whether versions are compatible
Uptime float64 `json:"uptime_seconds"`
DBResponseTime float64 `json:"db_response_ms"`
ActiveConns int32 `json:"active_connections"`
MaxConns int `json:"max_connections"`
MemoryAllocMB uint64 `json:"memory_alloc_mb"`
Error string `json:"error,omitempty"`
}
// BatchArgs represents arguments for batch operations
type BatchArgs struct {
Operations []BatchOperation `json:"operations"`
}
// BatchOperation represents a single operation in a batch
type BatchOperation struct {
Operation string `json:"operation"`
Args json.RawMessage `json:"args"`
}
// BatchResponse contains the results of a batch operation
type BatchResponse struct {
Results []BatchResult `json:"results"`
}
// BatchResult represents the result of a single operation in a batch
type BatchResult struct {
Success bool `json:"success"`
Data json.RawMessage `json:"data,omitempty"`
Error string `json:"error,omitempty"`
}
// CompactArgs represents arguments for the compact operation
type CompactArgs struct {
IssueID string `json:"issue_id,omitempty"` // Empty for --all
Tier int `json:"tier"` // 1 or 2
DryRun bool `json:"dry_run"`
Force bool `json:"force"`
All bool `json:"all"`
APIKey string `json:"api_key,omitempty"`
Workers int `json:"workers,omitempty"`
BatchSize int `json:"batch_size,omitempty"`
}
// CompactStatsArgs represents arguments for compact stats operation
type CompactStatsArgs struct {
Tier int `json:"tier,omitempty"`
}
// CompactResponse represents the response from a compact operation
type CompactResponse struct {
Success bool `json:"success"`
IssueID string `json:"issue_id,omitempty"`
Results []CompactResult `json:"results,omitempty"` // For batch operations
Stats *CompactStatsData `json:"stats,omitempty"` // For stats operation
OriginalSize int `json:"original_size,omitempty"`
CompactedSize int `json:"compacted_size,omitempty"`
Reduction string `json:"reduction,omitempty"`
Duration string `json:"duration,omitempty"`
DryRun bool `json:"dry_run,omitempty"`
}
// CompactResult represents the result of compacting a single issue
type CompactResult struct {
IssueID string `json:"issue_id"`
Success bool `json:"success"`
Error string `json:"error,omitempty"`
OriginalSize int `json:"original_size,omitempty"`
CompactedSize int `json:"compacted_size,omitempty"`
Reduction string `json:"reduction,omitempty"`
}
// CompactStatsData represents compaction statistics
type CompactStatsData struct {
Tier1Candidates int `json:"tier1_candidates"`
Tier2Candidates int `json:"tier2_candidates"`
TotalClosed int `json:"total_closed"`
Tier1MinAge string `json:"tier1_min_age"`
Tier2MinAge string `json:"tier2_min_age"`
EstimatedSavings string `json:"estimated_savings,omitempty"`
}
// ExportArgs represents arguments for the export operation
type ExportArgs struct {
JSONLPath string `json:"jsonl_path"` // Path to export JSONL file
}
// ImportArgs represents arguments for the import operation
type ImportArgs struct {
JSONLPath string `json:"jsonl_path"` // Path to import JSONL file
}
// GetMutationsArgs represents arguments for retrieving recent mutations
type GetMutationsArgs struct {
Since int64 `json:"since"` // Unix timestamp in milliseconds (0 for all recent)
}
// Gate operations
// GateCreateArgs represents arguments for creating a gate
type GateCreateArgs struct {
Title string `json:"title"`
AwaitType string `json:"await_type"` // gh:run, gh:pr, timer, human, mail
AwaitID string `json:"await_id"` // ID/value for the await type
Timeout time.Duration `json:"timeout"` // Timeout duration
Waiters []string `json:"waiters"` // Mail addresses to notify when gate clears
}
// GateCreateResult represents the result of creating a gate
type GateCreateResult struct {
ID string `json:"id"` // Created gate ID
}
// GateListArgs represents arguments for listing gates
type GateListArgs struct {
All bool `json:"all"` // Include closed gates
}
// GateShowArgs represents arguments for showing a gate
type GateShowArgs struct {
ID string `json:"id"` // Gate ID (partial or full)
}
// GateCloseArgs represents arguments for closing a gate
type GateCloseArgs struct {
ID string `json:"id"` // Gate ID (partial or full)
Reason string `json:"reason,omitempty"` // Close reason
}
// GateWaitArgs represents arguments for adding waiters to a gate
type GateWaitArgs struct {
ID string `json:"id"` // Gate ID (partial or full)
Waiters []string `json:"waiters"` // Additional waiters to add
}
// GateWaitResult represents the result of adding waiters
type GateWaitResult struct {
AddedCount int `json:"added_count"` // Number of new waiters added
}
// GetWorkerStatusArgs represents arguments for retrieving worker status
type GetWorkerStatusArgs struct {
// Assignee filters to a specific worker (optional, empty = all workers)
Assignee string `json:"assignee,omitempty"`
}
// WorkerStatus represents the status of a single worker and their current work
type WorkerStatus struct {
Assignee string `json:"assignee"` // Worker identifier
MoleculeID string `json:"molecule_id,omitempty"` // Parent molecule/epic ID (if working on a step)
MoleculeTitle string `json:"molecule_title,omitempty"` // Parent molecule/epic title
CurrentStep int `json:"current_step,omitempty"` // Current step number (1-indexed)
TotalSteps int `json:"total_steps,omitempty"` // Total number of steps in molecule
StepID string `json:"step_id,omitempty"` // Current step issue ID
StepTitle string `json:"step_title,omitempty"` // Current step issue title
LastActivity string `json:"last_activity"` // ISO 8601 timestamp of last update
Status string `json:"status"` // Current work status (in_progress, blocked, etc.)
}
// GetWorkerStatusResponse is the response for get_worker_status operation
type GetWorkerStatusResponse struct {
Workers []WorkerStatus `json:"workers"`
}
// GetMoleculeProgressArgs represents arguments for the get_molecule_progress operation
type GetMoleculeProgressArgs struct {
MoleculeID string `json:"molecule_id"` // The ID of the molecule (parent issue)
}
// MoleculeStep represents a single step within a molecule
type MoleculeStep struct {
ID string `json:"id"`
Title string `json:"title"`
Status string `json:"status"` // "done", "current", "ready", "blocked"
StartTime *string `json:"start_time"` // ISO 8601 timestamp when step was created
CloseTime *string `json:"close_time"` // ISO 8601 timestamp when step was closed (if done)
}
// MoleculeProgress represents the progress of a molecule (parent issue with steps)
type MoleculeProgress struct {
MoleculeID string `json:"molecule_id"`
Title string `json:"title"`
Assignee string `json:"assignee"`
Steps []MoleculeStep `json:"steps"`
}
// GetConfigArgs represents arguments for getting daemon config
type GetConfigArgs struct {
Key string `json:"key"` // Config key to retrieve (e.g., "issue_prefix")
}
// GetConfigResponse represents the response from get_config operation
type GetConfigResponse struct {
Key string `json:"key"`
Value string `json:"value"`
}
// MolStaleArgs represents arguments for the mol stale operation
type MolStaleArgs struct {
BlockingOnly bool `json:"blocking_only"` // Only show molecules blocking other work
UnassignedOnly bool `json:"unassigned_only"` // Only show unassigned molecules
ShowAll bool `json:"show_all"` // Include molecules with 0 children
}
// StaleMolecule holds info about a stale molecule (for RPC response)
type StaleMolecule struct {
ID string `json:"id"`
Title string `json:"title"`
TotalChildren int `json:"total_children"`
ClosedChildren int `json:"closed_children"`
Assignee string `json:"assignee,omitempty"`
BlockingIssues []string `json:"blocking_issues,omitempty"`
BlockingCount int `json:"blocking_count"`
}
// MolStaleResponse holds the result of the mol stale operation
type MolStaleResponse struct {
StaleMolecules []*StaleMolecule `json:"stale_molecules"`
TotalCount int `json:"total_count"`
BlockingCount int `json:"blocking_count"`
}