Previously bd doctor warned about using beads.jsonl vs issues.jsonl, but
users should be free to configure any name they want. The real problems are:
1. Having multiple JSONL files (sync/merge conflicts)
2. Configuration not matching reality
Changes:
- Rewrote CheckLegacyJSONLFilename to scan for ALL .jsonl files
- Now filters out merge artifacts (backup, .orig, .bak, etc.)
- Warns only when multiple real JSONL files exist
- Added CheckDatabaseConfig to detect when configured paths do not match
what actually exists on disk
- Updated tests to verify backup files are ignored
- Added test cases for custom JSONL filenames
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
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