Peter Chanthamynavong fc8437ed08 fix(mol): substitute title/desc vars in root molecule bead ...

When pouring a formula with `title` and `desc` variables defined,
the root molecule's title and description now use {{title}} and
{{desc}} placeholders that get substituted during pour.

Previously, the root was always assigned the formula name and static
description, ignoring these common variables. Child beads correctly
substituted variables, but the root did not.

Fixes #852

2026-01-02 16:00:54 -08:00

..

doctor

fix(doctor): skip JSONL tracking checks in sync-branch mode (GH#858) (#860)

2026-01-02 15:56:33 -08:00

setup

test: add unit tests for bd setup gemini

2026-01-02 00:19:14 -08:00

templates/hooks

fix(release): update missed version files to 0.43.0

2026-01-02 01:49:22 -08:00

testdata

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.gitattributes

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@AGENTS.md

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activity_test.go

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activity.go

feat: add FreeBSD release builds (#832)

2026-01-01 10:51:51 -08:00

admin_aliases.go

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admin.go

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agent_test.go

fix: auto-create agent bead when bd agent state called on non-existent agent

2026-01-02 12:29:21 -08:00

agent.go

fix: auto-create agent bead when bd agent state called on non-existent agent

2026-01-02 12:29:21 -08:00

AGENTS.md

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audit.go

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autoflush.go

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autoimport_test.go

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autoimport.go

Add debug logging for YAML parse errors in autoimport (bd-mql4)

2025-12-30 16:51:14 -08:00

autostart_test.go

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cleanup.go

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cli_coverage_show_test.go

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cli_fast_test.go

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close.go

feat(validation): add ValidateTemplate() function (bd-615z)

2026-01-01 12:42:43 -08:00

comments_test.go

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comments.go

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compact_rpc.go

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compact_test.go

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compact_tombstone.go

fix: bd admin compact --older-than=0 now expires all tombstones

2025-12-30 00:00:25 -08:00

compact.go

fix: bd admin compact --older-than=0 now expires all tombstones

2025-12-30 00:00:25 -08:00

config_test.go

fix: allow yaml-only config operations without database (GH#536)

2026-01-02 00:02:20 -08:00

config.go

fix: Show warning when config.yaml overrides database config (bd-20j)

2025-12-29 14:03:39 -08:00

context_test.go

fix: prevent nil context panic in multi-repo hydration (#840)

2026-01-01 10:46:56 -08:00

context.go

fix: prevent nil context panic in multi-repo hydration (#840)

2026-01-01 10:46:56 -08:00

cook_test.go

test(cook): add gate bead creation tests (bd-4k3c)

2026-01-02 14:01:56 -08:00

cook.go

fix(mol): substitute title/desc vars in root molecule bead

2026-01-02 16:00:54 -08:00

count.go

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create_form_test.go

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create_form.go

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create_notes_test.go

feat: add --notes flag to bd create command (GH#830)

2026-01-01 10:53:59 -08:00

create_test.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

create.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

daemon_autoimport_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

daemon_autopull_yaml_test.go

fix(daemon): Use syncbranch.IsConfigured() for autoPull (#837)

2026-01-01 10:48:14 -08:00

daemon_autostart_unit_test.go

fix: rename wisp prefix from 'eph' to 'wisp' (bd-ucj8)

2026-01-01 23:55:40 -08:00

daemon_autostart.go

fix: eliminate 5+ second delays from stale daemon.lock files (bd-htwx)

2025-12-31 13:03:49 -08:00

daemon_basics_test.go

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daemon_config.go

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daemon_crash_test.go

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daemon_debouncer_test.go

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daemon_debouncer.go

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daemon_event_loop.go

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daemon_health_freebsd.go

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daemon_health_solaris.go

fix: add illumos/solaris support for disk space check (#798)

2025-12-29 14:43:00 -08:00

daemon_health_unix.go

fix: add illumos/solaris support for disk space check (#798)

2025-12-29 14:43:00 -08:00

daemon_health_wasm.go

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daemon_health_windows.go

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daemon_integration_test.go

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daemon_lifecycle.go

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daemon_local_test.go

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daemon_lock_test.go

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daemon_lock_unix.go

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daemon_lock_wasm.go

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daemon_lock_windows.go

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daemon_lock.go

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daemon_logger.go

chore: remove deprecated setupDaemonLoggerLegacy function (bd-2dwo)

2025-12-30 00:27:12 -08:00

daemon_parent_test.go

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daemon_rotation_test.go

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daemon_server.go

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daemon_sync_branch_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

daemon_sync_branch.go

fix: bd sync fails to copy local changes TO beads-sync worktree (#810)

2025-12-30 16:49:50 -08:00

daemon_sync_state.go

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daemon_sync_test.go

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daemon_sync.go

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daemon_test.go

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daemon_unix_test.go

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daemon_unix.go

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daemon_wasm.go

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daemon_watcher_platform_test.go

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daemon_watcher_test.go

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daemon_watcher.go

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daemon_windows.go

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daemon.go

fix(daemon): Use syncbranch.IsConfigured() for autoPull (#837)

2026-01-01 10:48:14 -08:00

daemons_test.go

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daemons.go

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defer.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

delete_rpc_test.go

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delete_test.go

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delete.go

fix: add text reference updates to deleteBatchFallback

2025-12-31 12:24:17 -08:00

deletion_tracking_test.go

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deletion_tracking.go

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dep_test.go

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dep.go

feat: add refs field for cross-references with relationship types (bd-irah)

2025-12-30 15:52:33 -08:00

detect_pollution.go

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direct_mode_test.go

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direct_mode.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

docs.md

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doctor_fix.go

fix: prevent .beads/redirect from being committed (GH#814)

2025-12-30 18:29:03 -08:00

doctor_health.go

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doctor_pollution.go

fix: Add nolint comments for gosec/errcheck/unparam warnings

2025-12-29 14:39:43 -08:00

doctor_repair_chaos_test.go

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doctor_repair_test.go

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doctor_test.go

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doctor.go

feat: add bd setup gemini for Gemini CLI integration (#845)

2026-01-02 00:02:38 -08:00

duplicate.go

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duplicates_test.go

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duplicates.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

edit.go

fix: Add nolint comments for gosec/errcheck/unparam warnings

2025-12-29 14:39:43 -08:00

epic_test.go

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epic.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

errors.go

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export_import_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

export_integrity_integration_test.go

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export_mtime_test.go

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export_obsidian_test.go

feat: add Obsidian Tasks markdown export format (GH#819)

2025-12-31 11:39:17 -08:00

export_obsidian.go

feat: add Obsidian Tasks markdown export format (GH#819)

2025-12-31 11:39:17 -08:00

export_staleness_test.go

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export_test.go

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export.go

feat(list): Add type aliases for --type flag (gt-pvhsv)

2026-01-01 18:17:12 -08:00

external_ref_test.go

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flags.go

feat: add --notes flag to bd create command (GH#830)

2026-01-01 10:53:59 -08:00

flush_manager_test.go

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flush_manager.go

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fork_protection_test.go

fix(fork-protection): only apply protection to actual beads forks (#823) (#828)

2026-01-01 10:51:22 -08:00

fork_protection.go

fix: bd sync fails with exit 128 in bare repo worktrees (GH#827)

2026-01-01 11:05:05 -08:00

formula.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

gate_test.go

feat(gate): add cross-rig bead gate support (Phase 4)

2026-01-02 13:11:36 -08:00

gate.go

feat(gate): add cross-rig bead gate support (Phase 4)

2026-01-02 13:11:36 -08:00

git_sync_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

git_test_helpers.go

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graph_test.go

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graph.go

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helpers_test.go

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hooks_test.go

fix: prevent infinite loop in bd hooks run when .old is a bd shim (#843)

2026-01-01 19:46:34 -08:00

hooks.go

fix: prevent infinite loop in bd hooks run when .old is a bd shim (#843)

2026-01-01 19:46:34 -08:00

human.go

Add bd human command for focused help menu

2025-12-29 14:33:19 -08:00

import_bug_test.go

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import_cancellation_test.go

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import_helpers_test.go

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import_idempotent_test.go

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import_mtime_test.go

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import_multipart_id_test.go

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import_profile_test.go

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import_shared.go

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import_uncommitted_test.go

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import.go

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info_test.go

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info.go

docs: add v0.42.0 changelog and whats-new entries

2025-12-30 21:21:46 -08:00

init_agent.go

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init_contributor.go

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init_git_hooks.go

fix: git hook chaining now works correctly (GH#816)

2025-12-30 20:40:09 -08:00

init_hooks_test.go

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init_stealth.go

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init_team.go

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init_templates.go

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init_test.go

test: add coverage for GH#807 sync.branch main/master rejection

2025-12-30 18:19:53 -08:00

init.go

fix: prevent sync.branch from being set to main/master (#807)

2025-12-30 16:45:51 -08:00

integrity_content_test.go

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integrity_test.go

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integrity.go

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jira_test.go

Implement Jira issue timestamp comparison for sync (bd-0qx5)

2025-12-30 16:07:31 -08:00

jira.go

feat: add FreeBSD release builds (#832)

2026-01-01 10:51:51 -08:00

jsonl_integrity_test.go

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label_test.go

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label.go

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last_touched_test.go

Add 'last touched' issue tracking for update/close without ID

2025-12-30 16:58:10 -08:00

last_touched.go

Add 'last touched' issue tracking for update/close without ID

2025-12-30 16:58:10 -08:00

linear_conflict.go

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linear_sync.go

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linear_test.go

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linear.go

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lint.go

feat(cli): add bd lint command for template validation (bd-gn5r)

2026-01-01 14:18:49 -08:00

list_helpers_test.go

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list_test.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

list.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

mail.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

main_daemon.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

main_errors.go

fix: rename wisp prefix from 'eph' to 'wisp' (bd-ucj8)

2026-01-01 23:55:40 -08:00

main_help.go

…

main_test.go

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main.go

fix: allow yaml-only config operations without database (GH#536)

2026-01-02 00:02:20 -08:00

markdown_test.go

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markdown.go

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merge_security_test.go

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merge.go

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migrate_hash_ids_test.go

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migrate_hash_ids.go

feat: integrate migration detection into bd doctor (bd-7l27)

2025-12-30 00:06:42 -08:00

migrate_issues.go

feat: integrate migration detection into bd doctor (bd-7l27)

2025-12-30 00:06:42 -08:00

migrate_sync_test.go

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migrate_sync.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

migrate_test.go

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migrate_tombstones.go

feat: integrate migration detection into bd doctor (bd-7l27)

2025-12-30 00:06:42 -08:00

migrate.go

feat: integrate migration detection into bd doctor (bd-7l27)

2025-12-30 00:06:42 -08:00

mol_bond.go

feat: implement Step.Condition evaluation in bd cook (bd-7zka.1)

2025-12-31 00:33:11 -08:00

mol_burn.go

feat: bd mol burn now works on mols, not just wisps (bd-l6yk)

2025-12-29 17:10:26 -08:00

mol_current.go

feat: add display guards for large molecules in bd mol current (bd-vln0)

2025-12-31 13:08:41 -08:00

mol_distill.go

fix: --var flag now allows commas in values (#786)

2025-12-29 16:17:51 -08:00

mol_progress.go

fix: use lightweight molecule discovery in bd mol progress

2025-12-31 13:04:19 -08:00

mol_show.go

refactor(mol): remove redundant guard in showCompoundBondingInfo

2026-01-02 14:08:22 -08:00

mol_squash.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

mol_stale.go

feat: add daemon RPC endpoints for config and mol stale (bd-ag35)

2025-12-30 06:59:51 -08:00

mol_test.go

fix(mol): substitute title/desc vars in root molecule bead

2026-01-02 16:00:54 -08:00

mol.go

…

move_test.go

feat: add bd move command for cross-rig issue relocation (bd-v43g)

2026-01-02 01:31:19 -08:00

move.go

fix(move): clean up code based on review

2026-01-02 01:35:32 -08:00

nodb_test.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

nodb.go

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onboard_test.go

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onboard.go

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orphans_test.go

test: improve nodb and orphans coverage

2025-12-29 14:17:44 -08:00

orphans.go

test: improve nodb and orphans coverage

2025-12-29 14:17:44 -08:00

output_test.go

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periodic_remote_sync_test.go

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pour.go

feat: implement Step.Condition evaluation in bd cook (bd-7zka.1)

2025-12-31 00:33:11 -08:00

preflight_test.go

feat: add nix-hash staleness detection to bd preflight --check (bd-lfak.4)

2025-12-31 00:05:53 -08:00

preflight.go

feat: add FreeBSD release builds (#832)

2026-01-01 10:51:51 -08:00

prime_test.go

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prime.go

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quick.go

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quickstart.go

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readonly_test.go

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ready_test.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

ready.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

refile.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

reinit_test.go

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relate_test.go

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relate.go

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rename_prefix_repair_test.go

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rename_prefix_test.go

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rename_prefix.go

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reopen_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

reopen.go

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repair_deps_test.go

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repair_orphans_test.go

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repair.go

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repo.go

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reset_test.go

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reset.go

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restore_test.go

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restore.go

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routed.go

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sandbox_test.go

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sandbox_unix.go

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sandbox_windows.go

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scripttest_test.go

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search_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

search.go

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setup.go

feat: add bd setup gemini for Gemini CLI integration (#845)

2026-01-02 00:02:38 -08:00

ship.go

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show_thread.go

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show_unit_helpers_test.go

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show_unit_helpers.go

Centralize validation patterns with composable validators (bd-jbqx)

2025-12-30 16:00:22 -08:00

show.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

simple_helpers_test.go

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slot.go

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snapshot_manager.go

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stale_test.go

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stale.go

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staleness.go

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state_test.go

feat: add bd state and bd set-state helper commands (bd-7l67)

2025-12-30 15:57:08 -08:00

state.go

feat: add bd state and bd set-state helper commands (bd-7l67)

2025-12-30 15:57:08 -08:00

status_test.go

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status.go

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swarm.go

fix: Add nolint comments for gosec/errcheck/unparam warnings

2025-12-29 14:39:43 -08:00

sync_branch_priority_test.go

fix: bypass gitHasBeadsChanges when using sync-branch (#812)

2025-12-30 18:04:26 -08:00

sync_branch.go

Fix bd sync failing to copy local changes to beads-sync worktree (GH#810)

2025-12-30 18:11:08 -08:00

sync_check.go

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sync_export.go

feat(config): add validation.on-create and validation.on-sync config options (bd-t7jq)

2026-01-01 19:31:12 -08:00

sync_git.go

fix: bd sync fails with exit 128 in bare repo worktrees (GH#827)

2026-01-01 11:05:05 -08:00

sync_helpers_more_test.go

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sync_import.go

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sync_local_only_test.go

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sync_merge_test.go

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sync_test.go

Fix bd sync failing to copy local changes to beads-sync worktree (GH#810)

2025-12-30 18:11:08 -08:00

sync_validation_test.go

test(sync): add tests for pre-sync validation hook (bd-nv4g)

2026-01-02 00:05:12 -08:00

sync.go

feat(config): add validation.on-create and validation.on-sync config options (bd-t7jq)

2026-01-01 19:31:12 -08:00

template_test.go

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template.go

fix: --var flag now allows commas in values (#786)

2025-12-29 16:17:51 -08:00

test_guard_helpers.go

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test_helpers_test.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

test_repo_beads_guard_test.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

test_wait_helper.go

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thanks.go

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thread_test.go

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tips_example_test.go

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tips_test.go

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tips.go

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undefer.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

update.go

feat(dates): add --due and --defer timestamp options with natural language parsing (#847)

2026-01-01 20:06:13 -08:00

upgrade.go

…

utils_unit_test.go

Add unit tests to improve cmd/bd CLI coverage (bd-llfl)

2025-12-30 17:14:55 -08:00

version_test.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

version_tracking_test.go

chore: bump version to 0.43.0 (bd-lejq)

2026-01-02 01:07:34 -08:00

version_tracking.go

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version.go

chore: bump version to 0.43.0 (bd-lejq)

2026-01-02 01:07:34 -08:00

where.go

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wisp.go

fix: rename wisp prefix from 'eph' to 'wisp' (bd-ucj8)

2026-01-01 23:55:40 -08:00

worktree_cmd.go

fix: Add nolint comments for gosec/errcheck/unparam warnings

2025-12-29 14:39:43 -08:00

worktree_daemon_test.go

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worktree_test.go

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worktree.go

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