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99f5e50a322cf09702a1d4f55753f8a333a19d0a
beads/cmd/bd
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matt wilkie 99f5e50a32 feat: Add 'bd orphans' command with DRY refactoring of orphan detection 
Implements the 'bd orphans' command to identify issues referenced in commits
but still open in the database, and refactors to eliminate code duplication.

- Creates cmd/bd/orphans.go with Cobra command structure
- Identifies orphaned issues (referenced in git commits but still open/in_progress)
- Supports multiple output formats (human, JSON, detailed)
- Auto-close with --fix flag

DRY refactoring:
- Extracted FindOrphanedIssues() to cmd/bd/doctor/git.go as shared core logic
- Moved OrphanIssue type to cmd/bd/doctor/types.go
- Refactored CheckOrphanedIssues() to use FindOrphanedIssues()

Cherry-picked from PR #767

Co-authored-by: Amp <amp@ampcode.com>
2025-12-27 17:23:45 -08:00
..
doctor
feat: Add 'bd orphans' command with DRY refactoring of orphan detection
2025-12-27 17:23:45 -08:00
setup
Add tests for setup package (28.4% → 53.8% coverage)
2025-12-23 22:40:16 -08:00
templates/hooks
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
testdata
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
.gitattributes
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@AGENTS.md
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activity_test.go
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activity.go
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admin_aliases.go
feat: add bd admin parent command for cleanup/compact/reset (bd-3u8m)
2025-12-27 16:21:08 -08:00
admin.go
feat: add bd admin parent command for cleanup/compact/reset (bd-3u8m)
2025-12-27 16:21:08 -08:00
AGENTS.md
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audit.go
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autoflush.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
autoimport_test.go
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autoimport.go
Refactor duplicate JSONL-from-git parsing code (bd-y2v)
2025-12-23 22:41:05 -08:00
autostart_test.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
cleanup.go
feat: add bd admin parent command for cleanup/compact/reset (bd-3u8m)
2025-12-27 16:21:08 -08:00
cli_coverage_show_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
cli_fast_test.go
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comments_test.go
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comments.go
fix: Use FatalErrorRespectJSON across all commands (bd-28sq)
2025-12-25 13:56:19 -08:00
compact_test.go
feat(compact): Add --prune mode for standalone tombstone pruning (bd-c7y5)
2025-12-24 00:08:10 -08:00
compact.go
feat: add bd admin parent command for cleanup/compact/reset (bd-3u8m)
2025-12-27 16:21:08 -08:00
config_test.go
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config.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
cook_test.go
feat: Compile-time vs runtime cooking (gt-8tmz.23)
2025-12-25 18:40:15 -08:00
cook.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
count.go
feat: add gate issue type and CLI commands for async coordination (bd-udsi)
2025-12-23 12:06:42 -08:00
create_form_test.go
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create_form.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
create_test.go
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create.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemon_autoimport_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemon_autostart_unit_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemon_autostart.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemon_basics_test.go
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daemon_config.go
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daemon_crash_test.go
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daemon_debouncer_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemon_debouncer.go
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daemon_event_loop.go
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daemon_health_freebsd.go
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daemon_health_unix.go
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daemon_health_wasm.go
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daemon_health_windows.go
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daemon_integration_test.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
daemon_lifecycle.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
daemon_local_test.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
daemon_lock_test.go
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daemon_lock_unix.go
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daemon_lock_wasm.go
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daemon_lock_windows.go
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daemon_lock.go
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daemon_logger.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
daemon_parent_test.go
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daemon_rotation_test.go
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daemon_server.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
daemon_sync_branch_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemon_sync_branch.go
fix(sync): respect sync.remote config in daemon sync operations (#736)
2025-12-24 12:43:18 -08:00
daemon_sync_state.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemon_sync_test.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
daemon_sync.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemon_test.go
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daemon_unix_test.go
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daemon_unix.go
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daemon_wasm.go
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daemon_watcher_platform_test.go
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daemon_watcher_test.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
daemon_watcher.go
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daemon_windows.go
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daemon.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
daemons_test.go
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daemons.go
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defer.go
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delete_rpc_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
delete_test.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
delete.go
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deletion_tracking_test.go
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deletion_tracking.go
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dep_test.go
feat(deps): detect/prevent child→parent dependency anti-pattern (bd-nim5)
2025-12-24 13:03:27 -08:00
dep.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
detect_pollution.go
feat: integrate detect-pollution into bd doctor --check=pollution (bd-kff0)
2025-12-27 16:20:12 -08:00
direct_mode_test.go
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direct_mode.go
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docs.md
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doctor_repair_chaos_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
doctor_repair_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
doctor_test.go
fix(doctor): handle installed_plugins.json v2 format (GH#741)
2025-12-25 16:20:02 -08:00
doctor.go
feat: integrate detect-pollution into bd doctor --check=pollution (bd-kff0)
2025-12-27 16:20:12 -08:00
duplicate.go
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duplicates_test.go
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duplicates.go
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epic_test.go
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epic.go
fix: Use FatalErrorRespectJSON across all commands (bd-28sq)
2025-12-25 13:56:19 -08:00
errors.go
fix(json): standardize JSON output for errors and empty arrays (bd-au0.7)
2025-12-24 00:07:52 -08:00
export_import_test.go
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export_integrity_integration_test.go
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export_mtime_test.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
export_staleness_test.go
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export_test.go
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export.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
external_ref_test.go
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flags.go
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flush_manager_test.go
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flush_manager.go
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fork_protection_test.go
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fork_protection.go
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formula.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
gate.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
git_sync_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
graph_test.go
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graph.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
helpers_test.go
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hooks_test.go
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hooks.go
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import_bug_test.go
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import_cancellation_test.go
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import_helpers_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
import_idempotent_test.go
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import_mtime_test.go
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import_multipart_id_test.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
import_profile_test.go
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import_shared.go
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import_uncommitted_test.go
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import.go
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info_test.go
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info.go
refactor: relocate thanks command to bd info --thanks (bd-wb9g)
2025-12-27 16:08:34 -08:00
init_contributor.go
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init_hooks_test.go
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init_team.go
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init_test.go
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init.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
integrity_content_test.go
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integrity_test.go
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integrity.go
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jira_test.go
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jira.go
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jsonl_integrity_test.go
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label_test.go
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label.go
fix: Use FatalErrorRespectJSON across all commands (bd-28sq)
2025-12-25 13:56:19 -08:00
linear_test.go
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linear.go
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list_helpers_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
list_test.go
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list.go
feat(list): add --pretty and --watch flags for built-in viewer (#729)
2025-12-24 12:35:57 -08:00
mail.go
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main_test.go
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main.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
markdown_test.go
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markdown.go
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merge_security_test.go
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merge.go
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migrate_hash_ids_test.go
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migrate_hash_ids.go
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migrate_issues.go
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migrate_sync_test.go
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migrate_sync.go
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migrate_test.go
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migrate_tombstones.go
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migrate.go
bd sync: 2025-12-23 23:38:57
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mol_bond.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
mol_burn.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
mol_current.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
mol_distill.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
mol_show.go
…
mol_squash.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
mol_stale.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
mol_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
mol.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
nodb_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
nodb.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
onboard_test.go
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onboard.go
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orphans_test.go
feat: Add 'bd orphans' command with DRY refactoring of orphan detection
2025-12-27 17:23:45 -08:00
orphans.go
feat: Add 'bd orphans' command with DRY refactoring of orphan detection
2025-12-27 17:23:45 -08:00
output_test.go
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periodic_remote_sync_test.go
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pour.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
prime_test.go
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prime.go
feat(prime): add no-git-ops config to disable git ops in session close (GH#593)
2025-12-25 14:25:45 -08:00
quick.go
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quickstart.go
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readonly_test.go
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ready_test.go
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ready.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
reinit_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
relate_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
relate.go
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rename_prefix_repair_test.go
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rename_prefix_test.go
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rename_prefix.go
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reopen_test.go
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reopen.go
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repair_deps_test.go
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repo.go
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reset_test.go
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reset.go
feat: add bd admin parent command for cleanup/compact/reset (bd-3u8m)
2025-12-27 16:21:08 -08:00
restore_test.go
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restore.go
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routed.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
sandbox_test.go
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sandbox_unix.go
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sandbox_windows.go
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scripttest_test.go
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search_test.go
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search.go
bd sync: 2025-12-23 23:38:57
2025-12-24 00:06:41 -08:00
setup.go
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ship.go
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show_unit_helpers_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
show_unit_helpers.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
show.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
simple_helpers_test.go
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snapshot_manager.go
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stale_test.go
fix(json): audit and standardize JSON output across commands (bd-au0.7)
2025-12-24 00:10:14 -08:00
stale.go
fix(json): audit and standardize JSON output across commands (bd-au0.7)
2025-12-24 00:10:14 -08:00
staleness.go
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status_test.go
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status.go
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sync_branch_priority_test.go
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sync_branch.go
fix: Prevent bd sync from committing non-.beads files (bd-trgb)
2025-12-25 12:05:46 -08:00
sync_check.go
fix: address CI lint errors (gosec, errcheck, unparam, duplicate tests) (#730)
2025-12-24 12:35:32 -08:00
sync_export.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
sync_helpers_more_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
sync_import.go
fix: address CI lint errors (gosec, errcheck, unparam, duplicate tests) (#730)
2025-12-24 12:35:32 -08:00
sync_local_only_test.go
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sync_merge_test.go
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sync_test.go
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sync.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
template_test.go
fix: mol run loads all hierarchical children + supports title lookup (bd-c8d5, bd-drcx)
2025-12-24 23:33:34 -08:00
template.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
test_helpers_test.go
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test_repo_beads_guard_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
test_wait_helper.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
thanks.go
refactor: relocate thanks command to bd info --thanks (bd-wb9g)
2025-12-27 16:08:34 -08:00
thread_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
tips_example_test.go
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tips_test.go
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tips.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
undefer.go
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upgrade.go
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version_test.go
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version_tracking_test.go
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version_tracking.go
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version.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
wisp.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
worktree_daemon_test.go
refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)
2025-12-27 16:02:15 -08:00
worktree_test.go
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worktree.go
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