aleiby 1472d115f1 fix(mol): find molecules attached to hooked issues (bd-o0mp) (#1302) ...

When no steps are in_progress, bd mol current now checks for molecules
bonded to hooked issues via blocks dependencies. This fixes the case
where a molecule is attached to an agent's hook but no steps have been
claimed yet.

The fix adds findHookedMolecules() as a fallback after findInProgressMolecules()
returns empty. It queries for hooked issues assigned to the agent and checks
for blocks dependencies pointing to molecules (epics or template-labeled issues).

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>

2026-01-24 17:11:44 -08:00

..

doctor

feat: update to use core tap for beads installation (#1261)

2026-01-24 17:11:21 -08:00

setup

feat(setup): add Codex CLI setup recipe (#1243)

2026-01-21 21:50:01 -08:00

templates/hooks

feat: update to use core tap for beads installation (#1261)

2026-01-24 17:11:21 -08:00

testdata

…

.gitattributes

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@AGENTS.md

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activity_test.go

…

activity_watcher.go

fix(ci): resolve lint errors and test failures

2026-01-20 20:50:59 -08:00

activity.go

fix(ci): resolve lint errors and test failures

2026-01-20 20:50:59 -08:00

actor_test.go

…

admin_aliases.go

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admin.go

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agent_routing_test.go

fix(ci): resolve lint errors and test failures

2026-01-20 20:50:59 -08:00

agent_test.go

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agent.go

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AGENTS.md

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audit.go

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autoflush_test.go

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autoflush.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

autoimport_test.go

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autoimport.go

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autostart_test.go

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branch.go

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children.go

fix(ci): resolve lint errors and test failures

2026-01-20 20:50:59 -08:00

cleanup.go

…

cli_coverage_show_test.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

cli_fast_test.go

feat(update): add --append-notes flag (#1304)

2026-01-24 17:11:25 -08:00

close.go

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comments_test.go

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comments.go

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compact_rpc.go

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compact_test.go

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compact_tombstone.go

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compact.go

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completions_test.go

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completions.go

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config_test.go

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config.go

fix(config): improve cross-platform path handling and regex efficiency

2026-01-19 11:42:09 -08:00

context_test.go

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context.go

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contributor_routing_e2e_test.go

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cook_test.go

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cook.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

count.go

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create_form_test.go

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create_form.go

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create_notes_test.go

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create_routing_flush_test.go

fix(routing): auto-enable hydration and flush JSONL after routed create (#1251)

2026-01-21 21:22:04 -08:00

create_test.go

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create.go

fix(routing): auto-enable hydration and flush JSONL after routed create (#1251)

2026-01-21 21:22:04 -08:00

cross_backend_jsonl_roundtrip_integration_test.go

/{cmd,docs,internal}: support import export for dolt backends

2026-01-21 13:13:24 -08:00

daemon_autoimport_test.go

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daemon_autopull_yaml_test.go

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daemon_autostart_unit_test.go

Fix CI failures (bd 1zo sandbox tests) (#1244)

2026-01-21 16:59:51 -08:00

daemon_autostart.go

fix(dolt): server mode should support multi-process access

2026-01-23 20:20:59 -08:00

daemon_basics_test.go

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daemon_config.go

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daemon_crash_test.go

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daemon_debouncer_test.go

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daemon_debouncer.go

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daemon_event_loop.go

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daemon_guard.go

fix(dolt): server mode should support multi-process access

2026-01-23 20:20:59 -08:00

daemon_health_freebsd.go

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daemon_health_solaris.go

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daemon_health_unix.go

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daemon_health_wasm.go

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daemon_health_windows.go

…

daemon_integration_test.go

…

daemon_lifecycle.go

fix(federation): add configurable ports, password support, fix log leak

2026-01-20 20:55:27 -08:00

daemon_local_test.go

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daemon_lock_test.go

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daemon_lock_unix.go

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daemon_lock_wasm.go

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daemon_lock_windows.go

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daemon_lock.go

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daemon_logger.go

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daemon_parent_test.go

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daemon_rotation_test.go

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daemon_server.go

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daemon_socket_test.go

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daemon_start.go

fix(daemon): allow read-only daemon commands with Dolt backend

2026-01-21 18:06:06 -08:00

daemon_status.go

…

daemon_sync_branch_test.go

fix(daemon): add sync-branch guard to daemon code paths (#1271)

2026-01-24 17:10:08 -08:00

daemon_sync_branch.go

fix(daemon): add sync-branch guard to daemon code paths (#1271)

2026-01-24 17:10:08 -08:00

daemon_sync_state.go

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daemon_sync_test.go

…

daemon_sync.go

fix(daemon): add sync-branch guard to daemon code paths (#1271)

2026-01-24 17:10:08 -08:00

daemon_test.go

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daemon_unix_test.go

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daemon_unix.go

…

daemon_wasm.go

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daemon_watcher_platform_test.go

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daemon_watcher_test.go

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daemon_watcher.go

…

daemon_windows.go

…

daemon.go

fix(daemon): add sync-branch guard to daemon code paths (#1271)

2026-01-24 17:10:08 -08:00

daemons_test.go

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daemons.go

fix(dolt): server mode should support multi-process access

2026-01-23 20:20:59 -08:00

defer.go

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delete_rpc_test.go

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delete_test.go

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delete.go

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deletion_tracking_test.go

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deletion_tracking.go

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dep_test.go

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dep.go

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detect_pollution.go

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diff.go

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direct_mode_test.go

/{cmd,docs,internal,website}: make dolt backend explicitly single process

2026-01-20 16:51:14 -08:00

direct_mode.go

fix(dolt): proper server mode support for routing and storage

2026-01-24 00:26:58 -08:00

docs.md

…

doctor_fix.go

feat(doctor): add patrol pollution detection and fix

2026-01-20 23:15:37 -08:00

doctor_health.go

style(doctor): use ui library for consistent --server output styling

2026-01-23 20:38:20 -08:00

doctor_pollution.go

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doctor_repair_chaos_test.go

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doctor_repair_test.go

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doctor_test.go

fix(init): respect BEADS_DIR environment variable (#1273)

2026-01-24 17:10:05 -08:00

doctor.go

fix(init): respect BEADS_DIR environment variable (#1273)

2026-01-24 17:10:05 -08:00

dolt_autocommit_config.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

dolt_autocommit_integration_test.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

dolt_autocommit_test.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

dolt_autocommit.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

dolt_daemon_autostart_integration_test.go

Fix Dolt backend init/daemon/doctor; prevent accidental SQLite artifacts; add integration tests; clean up lint (#1218)

2026-01-20 17:34:00 -08:00

dolt_doctor_integration_test.go

Fix Dolt backend init/daemon/doctor; prevent accidental SQLite artifacts; add integration tests; clean up lint (#1218)

2026-01-20 17:34:00 -08:00

dolt_jsonl_roundtrip_integration_test.go

/{cmd,docs,internal}: support import export for dolt backends

2026-01-21 13:13:24 -08:00

dolt_server_cgo.go

fix(build): add CGO build constraints for Dolt-dependent files

2026-01-22 00:01:37 -08:00

dolt_server_nocgo.go

fix(build): add CGO build constraints for Dolt-dependent files

2026-01-22 00:01:37 -08:00

dolt_singleprocess_test.go

fix(daemon): allow read-only daemon commands with Dolt backend

2026-01-21 18:06:06 -08:00

dual_mode_test.go

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duplicate.go

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duplicates_test.go

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duplicates.go

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edit.go

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epic_test.go

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epic.go

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errors.go

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export_import_test.go

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export_integrity_integration_test.go

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export_mtime_test.go

…

export_obsidian_test.go

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export_obsidian.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

export_staleness_test.go

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export_test.go

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export.go

/{cmd,docs,internal}: support import export for dolt backends

2026-01-21 13:13:24 -08:00

external_ref_test.go

…

federation_nocgo.go

fix(build): add CGO build constraints for Dolt-dependent files

2026-01-22 00:01:37 -08:00

federation.go

fix(build): add CGO build constraints for Dolt-dependent files

2026-01-22 00:01:37 -08:00

flags.go

feat(update): add --append-notes flag (#1304)

2026-01-24 17:11:25 -08:00

flush_manager_test.go

…

flush_manager.go

…

fork_protection_test.go

…

fork_protection.go

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formula.go

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gate_discover.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

gate_test.go

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gate.go

fix(gate): ensure add-waiter command functions (#1265)

2026-01-24 17:10:12 -08:00

git_sync_test.go

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git_test_helpers.go

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graph_test.go

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graph.go

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helpers_test.go

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history.go

…

hook_test.go

refactor(hook): simplify export state logic, add tests

2026-01-19 11:44:08 -08:00

hook.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

hooks_test.go

…

hooks.go

refactor(hooks): consolidate duplicate JSONL file lists into shared constant

2026-01-20 19:15:18 -08:00

human.go

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import_bug_test.go

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import_cancellation_test.go

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import_helpers_test.go

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import_idempotent_test.go

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import_mtime_test.go

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import_multipart_id_test.go

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import_profile_test.go

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import_shared.go

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import_uncommitted_test.go

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import.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

info_test.go

…

info.go

chore: Bump version to 0.49.0

2026-01-21 23:42:07 -08:00

init_agent.go

…

init_contributor.go

fix(init): respect BEADS_DIR environment variable (#1273)

2026-01-24 17:10:05 -08:00

init_git_hooks.go

feat(hooks): add jujutsu (jj) version control support

2026-01-20 19:13:02 -08:00

init_hooks_test.go

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init_stealth_test.go

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init_stealth.go

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init_team.go

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init_templates.go

…

init_test.go

fix(init): respect BEADS_DIR environment variable (#1273)

2026-01-24 17:10:05 -08:00

init.go

fix(init): respect BEADS_DIR environment variable (#1273)

2026-01-24 17:10:05 -08:00

integrity_content_test.go

…

integrity_test.go

…

integrity.go

…

jira_test.go

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jira.go

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jsonl_integrity_test.go

fix(export): populate export_hashes after successful export (GH#1278) (#1286)

2026-01-24 17:10:02 -08:00

label_test.go

…

label.go

…

last_touched_test.go

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last_touched.go

…

linear_conflict.go

…

linear_sync.go

feat(linear): add --type and --exclude-type flags for sync filtering (#1205)

2026-01-20 14:05:48 -08:00

linear_test.go

feat(linear): add --type and --exclude-type flags for sync filtering (#1205)

2026-01-20 14:05:48 -08:00

linear.go

feat(linear): add --type and --exclude-type flags for sync filtering (#1205)

2026-01-20 14:05:48 -08:00

lint.go

…

list_helpers_test.go

…

list_test.go

fix(list): stabilize tree ordering for consistent --tree output (#1228)

2026-01-21 19:11:25 -08:00

list.go

fix(list): populate dependencies field in JSON output (bd-tjxh) (#1296)

2026-01-24 17:09:45 -08:00

mail.go

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main_daemon.go

/{cmd,docs,internal,website}: make dolt backend explicitly single process

2026-01-20 16:51:14 -08:00

main_errors.go

…

main_help.go

…

main_test.go

fix(routing): close original store before replacing with target store (#1215)

2026-01-20 14:05:40 -08:00

main.go

feat(dolt): add server mode support for multi-client access

2026-01-23 22:35:34 -08:00

markdown_test.go

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markdown.go

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merge_security_test.go

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merge_slot.go

…

merge.go

…

migrate_dolt_nocgo.go

feat(migrate): add SQLite to Dolt migration tooling (hq-ew1mbr.6)

2026-01-21 17:46:15 -08:00

migrate_dolt.go

fix(migrate): address code review issues in Dolt migration

2026-01-21 19:27:01 -08:00

migrate_hash_ids_test.go

…

migrate_hash_ids.go

…

migrate_issues.go

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migrate_sync_test.go

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migrate_sync.go

fix(sync): add --sparse flag to git add for worktree compatibility (#1143)

2026-01-19 10:21:12 -08:00

migrate_test.go

…

migrate_tombstones.go

…

migrate.go

feat(migrate): add SQLite to Dolt migration tooling (hq-ew1mbr.6)

2026-01-21 17:46:15 -08:00

mol_bond.go

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mol_burn.go

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mol_current.go

fix(mol): find molecules attached to hooked issues (bd-o0mp) (#1302)

2026-01-24 17:11:44 -08:00

mol_distill.go

…

mol_progress.go

…

mol_ready_gated_test.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

mol_ready_gated.go

fix(ready): exclude molecule steps from bd ready by default (#1246)

2026-01-21 19:30:15 -08:00

mol_seed.go

feat(mol): add 'bd mol seed --patrol' command (#1149)

2026-01-20 14:06:57 -08:00

mol_show.go

…

mol_squash.go

…

mol_stale.go

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mol_test.go

fix(mol): find molecules attached to hooked issues (bd-o0mp) (#1302)

2026-01-24 17:11:44 -08:00

mol.go

…

move_test.go

…

move.go

…

nodb_test.go

…

nodb.go

…

onboard_test.go

…

onboard.go

…

orphans_test.go

fix(orphans): honor --db flag for cross-repo orphan detection (#1200)

2026-01-21 19:52:31 -08:00

orphans.go

fix(lint): check error return from provider.Close() (#1250)

2026-01-21 21:11:33 -08:00

output_test.go

…

periodic_remote_sync_test.go

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pour.go

fix(ready): exclude molecule steps from bd ready by default (#1246)

2026-01-21 19:30:15 -08:00

preflight_test.go

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preflight.go

…

prime_test.go

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prime.go

fix(prime): make beads default, avoid TodoWrite/TaskCreate (#1289)

2026-01-24 17:09:51 -08:00

quick.go

…

quickstart.go

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readonly_test.go

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ready_test.go

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ready.go

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refile.go

…

reinit_test.go

…

relate_test.go

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relate.go

…

rename_prefix_jsonl_update_test.go

…

rename_prefix_repair_test.go

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rename_prefix_test.go

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rename_prefix.go

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rename.go

feat(rename): add bd rename command for renaming issue IDs

2026-01-20 18:49:44 -08:00

reopen_test.go

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reopen.go

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repair_deps_test.go

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repair_orphans_test.go

…

repair.go

refactor: reduce cyclomatic complexity in repair.go and config_values.go (#1214)

2026-01-21 19:50:03 -08:00

repo.go

…

reset_test.go

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reset.go

fix(autoimport): auto-correct deleted status to tombstone for JSONL compatibility (#1231)

2026-01-21 21:50:38 -08:00

resolve_conflicts_test.go

…

resolve_conflicts.go

…

restore_test.go

…

restore.go

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routed.go

fix(dolt): proper server mode support for routing and storage

2026-01-24 00:26:58 -08:00

sandbox_test.go

…

sandbox_unix.go

…

sandbox_windows.go

…

scripttest_test.go

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search_test.go

…

search.go

…

setup.go

feat(setup): add Codex CLI setup recipe (#1243)

2026-01-21 21:50:01 -08:00

ship.go

…

show_test.go

feat(show): add --id flag for IDs that look like flags

2026-01-23 21:14:59 -08:00

show_thread.go

…

show_unit_helpers_test.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

show_unit_helpers.go

…

show.go

fix(bd): separate parent-child deps from blocking deps in bd show (#1293)

2026-01-24 17:09:48 -08:00

simple_helpers_test.go

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slot.go

…

snapshot_manager.go

…

stale_test.go

…

stale.go

…

staleness_test.go

…

staleness.go

…

state_test.go

…

state.go

…

status_test.go

…

status.go

…

swarm.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

sync_branch_priority_test.go

…

sync_branch.go

fix(sync): add --sparse flag to git add for worktree compatibility (#1143)

2026-01-19 10:21:12 -08:00

sync_check.go

…

sync_cwd_test.go

…

sync_export_incremental_test.go

feat(sync): add incremental export for large repos

2026-01-20 21:26:17 -08:00

sync_export.go

fix(export): populate export_hashes after successful export (GH#1278) (#1286)

2026-01-24 17:10:02 -08:00

sync_external_test.go

…

sync_git_test.go

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sync_git.go

…

sync_helpers_more_test.go

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sync_import.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

sync_local_only_test.go

…

sync_manual_test.go

feat(sync): add per-field merge strategies for conflict resolution

2026-01-21 19:40:39 -08:00

sync_manual.go

feat(sync): add per-field merge strategies for conflict resolution

2026-01-21 19:40:39 -08:00

sync_merge_test.go

feat(sync): add per-field merge strategies for conflict resolution

2026-01-21 19:40:39 -08:00

sync_merge.go

feat(sync): add per-field merge strategies for conflict resolution

2026-01-21 19:40:39 -08:00

sync_mode_test.go

…

sync_mode.go

fix(init): respect BEADS_DIR environment variable (#1273)

2026-01-24 17:10:05 -08:00

sync_modes_test.go

…

sync_test.go

…

sync_validation_test.go

…

sync.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

template_test.go

…

template.go

…

test_guard_helpers.go

…

test_helpers_test.go

…

test_repo_beads_guard_test.go

…

test_wait_helper.go

…

thanks.go

…

thread_test.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

tips_example_test.go

…

tips_test.go

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tips.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

types.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

undefer.go

…

update.go

feat(update): add --append-notes flag (#1304)

2026-01-24 17:11:25 -08:00

upgrade.go

…

utils_unit_test.go

…

vc.go

feat(dolt): auto-commit write commands and set explicit commit authors (#1270)

2026-01-22 20:52:20 -08:00

version_test.go

…

version_tracking_test.go

…

version_tracking.go

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version.go

chore: Bump version to 0.49.0

2026-01-21 23:42:07 -08:00

where.go

…

wisp.go

fix(ready): exclude molecule steps from bd ready by default (#1246)

2026-01-21 19:30:15 -08:00

worktree_cmd_test.go

…

worktree_cmd.go

fix(worktree): correct redirect path computation in bd worktree create (#1217)

2026-01-20 14:04:51 -08:00

worktree_daemon_test.go

…

worktree_test.go

…

worktree.go

…