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Update SKILL.md prerequisite version from 0.43.0 to 0.47.0. Add documentation for new commands in CLI_REFERENCE.md: - Health & Status section: doctor, status, prime - Quick capture (q) for scripting - Comments management - Full search command with sorting and filtering - Visualization section with graph command - Blocked issues filter Fixes #1042 Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>