- Add CheckOrphanedIssues to detect issues referenced in commits but still open - Pattern matches (prefix-xxx) in git log against open issues in database - Reports warning with issue IDs and commit hashes - Add 8 comprehensive tests for the new check Also: - Add tests for mol spawn --attach functionality (bd-f7p1) - Document commit message convention in AGENT_INSTRUCTIONS.md - Fix CheckpointWAL to use wrapDBError for consistency 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
667 lines
21 KiB
Go
667 lines
21 KiB
Go
package doctor
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import (
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"database/sql"
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"fmt"
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"os"
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"os/exec"
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"path/filepath"
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"regexp"
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"strings"
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_ "github.com/ncruces/go-sqlite3/driver"
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_ "github.com/ncruces/go-sqlite3/embed"
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"github.com/steveyegge/beads/cmd/bd/doctor/fix"
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"github.com/steveyegge/beads/internal/git"
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"github.com/steveyegge/beads/internal/syncbranch"
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)
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// CheckGitHooks verifies that recommended git hooks are installed.
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func CheckGitHooks() DoctorCheck {
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// Check if we're in a git repository using worktree-aware detection
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gitDir, err := git.GetGitDir()
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if err != nil {
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return DoctorCheck{
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Name: "Git Hooks",
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Status: StatusOK,
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Message: "N/A (not a git repository)",
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}
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}
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// Recommended hooks and their purposes
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recommendedHooks := map[string]string{
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"pre-commit": "Flushes pending bd changes to JSONL before commit",
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"post-merge": "Imports updated JSONL after git pull/merge",
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"pre-push": "Exports database to JSONL before push",
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}
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hooksDir := filepath.Join(gitDir, "hooks")
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var missingHooks []string
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var installedHooks []string
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for hookName := range recommendedHooks {
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hookPath := filepath.Join(hooksDir, hookName)
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if _, err := os.Stat(hookPath); os.IsNotExist(err) {
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missingHooks = append(missingHooks, hookName)
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} else {
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installedHooks = append(installedHooks, hookName)
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}
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}
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if len(missingHooks) == 0 {
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return DoctorCheck{
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Name: "Git Hooks",
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Status: StatusOK,
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Message: "All recommended hooks installed",
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Detail: fmt.Sprintf("Installed: %s", strings.Join(installedHooks, ", ")),
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}
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}
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hookInstallMsg := "Install hooks with 'bd hooks install'. See https://github.com/steveyegge/beads/tree/main/examples/git-hooks for installation instructions"
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if len(installedHooks) > 0 {
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return DoctorCheck{
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Name: "Git Hooks",
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Status: StatusWarning,
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Message: fmt.Sprintf("Missing %d recommended hook(s)", len(missingHooks)),
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Detail: fmt.Sprintf("Missing: %s", strings.Join(missingHooks, ", ")),
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Fix: hookInstallMsg,
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}
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}
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return DoctorCheck{
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Name: "Git Hooks",
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Status: StatusWarning,
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Message: "No recommended git hooks installed",
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Detail: fmt.Sprintf("Recommended: %s", strings.Join([]string{"pre-commit", "post-merge", "pre-push"}, ", ")),
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Fix: hookInstallMsg,
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}
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}
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// CheckSyncBranchHookCompatibility checks if pre-push hook is compatible with sync-branch mode.
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// When sync-branch is configured, the pre-push hook must have the sync-branch bypass logic
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// (added in version 0.29.0). Without it, users experience circular "bd sync" failures (issue #532).
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func CheckSyncBranchHookCompatibility(path string) DoctorCheck {
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// Check if sync-branch is configured
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syncBranch := syncbranch.GetFromYAML()
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if syncBranch == "" {
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return DoctorCheck{
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Name: "Sync Branch Hook Compatibility",
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Status: StatusOK,
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Message: "N/A (sync-branch not configured)",
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}
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}
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// sync-branch is configured - check pre-push hook version
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// Get actual git directory (handles worktrees where .git is a file)
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cmd := exec.Command("git", "rev-parse", "--git-dir")
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cmd.Dir = path
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output, err := cmd.Output()
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if err != nil {
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return DoctorCheck{
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Name: "Sync Branch Hook Compatibility",
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Status: StatusOK,
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Message: "N/A (not a git repository)",
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}
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}
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gitDir := strings.TrimSpace(string(output))
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if !filepath.IsAbs(gitDir) {
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gitDir = filepath.Join(path, gitDir)
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}
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// Check for pre-push hook in standard location or shared hooks location
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var hookPath string
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// First check if core.hooksPath is configured (shared hooks)
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hooksPathCmd := exec.Command("git", "config", "--get", "core.hooksPath")
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hooksPathCmd.Dir = path
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if hooksPathOutput, err := hooksPathCmd.Output(); err == nil {
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sharedHooksDir := strings.TrimSpace(string(hooksPathOutput))
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if !filepath.IsAbs(sharedHooksDir) {
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sharedHooksDir = filepath.Join(path, sharedHooksDir)
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}
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hookPath = filepath.Join(sharedHooksDir, "pre-push")
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} else {
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// Use standard .git/hooks location
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hookPath = filepath.Join(gitDir, "hooks", "pre-push")
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}
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hookContent, err := os.ReadFile(hookPath) // #nosec G304 - path is controlled
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if err != nil {
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// No pre-push hook installed - different issue, covered by checkGitHooks
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return DoctorCheck{
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Name: "Sync Branch Hook Compatibility",
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Status: StatusOK,
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Message: "N/A (no pre-push hook installed)",
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}
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}
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// Check if this is a bd hook and extract version
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hookStr := string(hookContent)
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if !strings.Contains(hookStr, "bd-hooks-version:") {
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// Not a bd hook - can't determine compatibility
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return DoctorCheck{
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Name: "Sync Branch Hook Compatibility",
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Status: StatusWarning,
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Message: "Pre-push hook is not a bd hook",
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Detail: "Cannot verify sync-branch compatibility with custom hooks",
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}
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}
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// Extract version from hook
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var hookVersion string
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for _, line := range strings.Split(hookStr, "\n") {
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if strings.Contains(line, "bd-hooks-version:") {
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parts := strings.SplitN(line, ":", 2)
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if len(parts) == 2 {
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hookVersion = strings.TrimSpace(parts[1])
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}
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break
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}
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}
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if hookVersion == "" {
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return DoctorCheck{
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Name: "Sync Branch Hook Compatibility",
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Status: StatusWarning,
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Message: "Could not determine pre-push hook version",
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Detail: "Cannot verify sync-branch compatibility",
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Fix: "Run 'bd hooks install --force' to update hooks",
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}
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}
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// MinSyncBranchHookVersion added sync-branch bypass logic
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// If hook version < MinSyncBranchHookVersion, it will cause circular "bd sync" failures
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if CompareVersions(hookVersion, MinSyncBranchHookVersion) < 0 {
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return DoctorCheck{
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Name: "Sync Branch Hook Compatibility",
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Status: StatusError,
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Message: fmt.Sprintf("Pre-push hook incompatible with sync-branch mode (version %s)", hookVersion),
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Detail: fmt.Sprintf("Hook version %s lacks sync-branch bypass (requires %s+). This causes circular 'bd sync' failures during push.", hookVersion, MinSyncBranchHookVersion),
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Fix: "Run 'bd hooks install --force' to update hooks",
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}
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}
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return DoctorCheck{
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Name: "Sync Branch Hook Compatibility",
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Status: StatusOK,
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Message: fmt.Sprintf("Pre-push hook compatible with sync-branch (version %s)", hookVersion),
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}
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}
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// CheckMergeDriver verifies that the git merge driver is correctly configured.
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func CheckMergeDriver(path string) DoctorCheck {
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// Check if we're in a git repository using worktree-aware detection
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_, err := git.GetGitDir()
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if err != nil {
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return DoctorCheck{
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Name: "Git Merge Driver",
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Status: StatusOK,
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Message: "N/A (not a git repository)",
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}
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}
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// Get current merge driver configuration
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cmd := exec.Command("git", "config", "merge.beads.driver")
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cmd.Dir = path
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output, err := cmd.Output()
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if err != nil {
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// Merge driver not configured
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return DoctorCheck{
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Name: "Git Merge Driver",
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Status: StatusWarning,
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Message: "Git merge driver not configured",
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Fix: "Run 'bd init' to configure the merge driver, or manually: git config merge.beads.driver \"bd merge %A %O %A %B\"",
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}
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}
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currentConfig := strings.TrimSpace(string(output))
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correctConfig := "bd merge %A %O %A %B"
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// Check if using old incorrect placeholders
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if strings.Contains(currentConfig, "%L") || strings.Contains(currentConfig, "%R") {
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return DoctorCheck{
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Name: "Git Merge Driver",
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Status: StatusError,
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Message: fmt.Sprintf("Incorrect merge driver config: %q (uses invalid %%L/%%R placeholders)", currentConfig),
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Detail: "Git only supports %O (base), %A (current), %B (other). Using %L/%R causes merge failures.",
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Fix: "Run 'bd doctor --fix' to update to correct config, or manually: git config merge.beads.driver \"bd merge %A %O %A %B\"",
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}
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}
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// Check if config is correct
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if currentConfig != correctConfig {
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return DoctorCheck{
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Name: "Git Merge Driver",
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Status: StatusWarning,
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Message: fmt.Sprintf("Non-standard merge driver config: %q", currentConfig),
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Detail: fmt.Sprintf("Expected: %q", correctConfig),
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Fix: fmt.Sprintf("Run 'bd doctor --fix' to update config, or manually: git config merge.beads.driver \"%s\"", correctConfig),
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}
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}
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return DoctorCheck{
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Name: "Git Merge Driver",
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Status: StatusOK,
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Message: "Correctly configured",
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Detail: currentConfig,
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}
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}
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// CheckSyncBranchConfig checks if sync-branch is properly configured.
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func CheckSyncBranchConfig(path string) DoctorCheck {
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beadsDir := filepath.Join(path, ".beads")
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// Skip if .beads doesn't exist
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if _, err := os.Stat(beadsDir); os.IsNotExist(err) {
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return DoctorCheck{
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Name: "Sync Branch Config",
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Status: StatusOK,
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Message: "N/A (no .beads directory)",
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}
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}
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// Check if we're in a git repository using worktree-aware detection
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_, err := git.GetGitDir()
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if err != nil {
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return DoctorCheck{
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Name: "Sync Branch Config",
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Status: StatusOK,
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Message: "N/A (not a git repository)",
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}
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}
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// Check sync-branch from config.yaml or environment variable
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// This is the source of truth for multi-clone setups
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syncBranch := syncbranch.GetFromYAML()
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// Get current branch
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currentBranch := ""
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cmd := exec.Command("git", "symbolic-ref", "--short", "HEAD")
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cmd.Dir = path
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if output, err := cmd.Output(); err == nil {
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currentBranch = strings.TrimSpace(string(output))
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}
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// CRITICAL: Check if we're on the sync branch - this is a misconfiguration
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// that will cause bd sync to fail trying to create a worktree for a branch
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// that's already checked out
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if syncBranch != "" && currentBranch == syncBranch {
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return DoctorCheck{
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Name: "Sync Branch Config",
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Status: StatusError,
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Message: fmt.Sprintf("On sync branch '%s'", syncBranch),
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Detail: fmt.Sprintf("Currently on branch '%s' which is configured as the sync branch. bd sync cannot create a worktree for a branch that's already checked out.", syncBranch),
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Fix: "Switch to your main working branch: git checkout main",
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}
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}
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if syncBranch != "" {
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return DoctorCheck{
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Name: "Sync Branch Config",
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Status: StatusOK,
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Message: fmt.Sprintf("Configured (%s)", syncBranch),
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Detail: fmt.Sprintf("Current branch: %s, sync branch: %s", currentBranch, syncBranch),
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}
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}
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// Not configured - this is optional but recommended for multi-clone setups
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// Check if this looks like a multi-clone setup (has remote)
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hasRemote := false
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cmd = exec.Command("git", "remote")
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cmd.Dir = path
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if output, err := cmd.Output(); err == nil && len(strings.TrimSpace(string(output))) > 0 {
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hasRemote = true
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}
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if hasRemote {
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return DoctorCheck{
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Name: "Sync Branch Config",
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Status: StatusWarning,
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Message: "sync-branch not configured",
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Detail: "Multi-clone setups should configure sync-branch in config.yaml",
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Fix: "Add 'sync-branch: beads-sync' to .beads/config.yaml",
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}
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}
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// No remote - probably a local-only repo, sync-branch not needed
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return DoctorCheck{
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Name: "Sync Branch Config",
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Status: StatusOK,
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Message: "N/A (no remote configured)",
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}
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}
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// CheckSyncBranchHealth detects when the sync branch has diverged from main
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// or from the remote sync branch (after a force-push reset).
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// bd-6rf: Detect and fix stale beads-sync branch
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func CheckSyncBranchHealth(path string) DoctorCheck {
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// Skip if not in a git repo using worktree-aware detection
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_, err := git.GetGitDir()
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if err != nil {
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusOK,
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Message: "N/A (not a git repository)",
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}
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}
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// Get configured sync branch
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syncBranch := syncbranch.GetFromYAML()
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if syncBranch == "" {
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusOK,
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Message: "N/A (no sync branch configured)",
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}
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}
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// Check if local sync branch exists
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cmd := exec.Command("git", "rev-parse", "--verify", syncBranch) // #nosec G204 - syncBranch from config file
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cmd.Dir = path
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if err := cmd.Run(); err != nil {
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// Local branch doesn't exist - that's fine, bd sync will create it
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusOK,
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Message: fmt.Sprintf("N/A (local %s branch not created yet)", syncBranch),
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}
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}
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// Check if remote sync branch exists
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remote := "origin"
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remoteBranch := fmt.Sprintf("%s/%s", remote, syncBranch)
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cmd = exec.Command("git", "rev-parse", "--verify", remoteBranch) // #nosec G204 - remoteBranch from config
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cmd.Dir = path
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if err := cmd.Run(); err != nil {
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// Remote branch doesn't exist - that's fine
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusOK,
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Message: fmt.Sprintf("N/A (remote %s not found)", remoteBranch),
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}
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}
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// Check 1: Is local sync branch diverged from remote? (after force-push)
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// If they have no common ancestor in recent history, the remote was likely force-pushed
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cmd = exec.Command("git", "merge-base", syncBranch, remoteBranch) // #nosec G204 - branches from config
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cmd.Dir = path
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mergeBaseOutput, err := cmd.Output()
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if err != nil {
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// No common ancestor - branches have completely diverged
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusWarning,
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Message: fmt.Sprintf("Local %s diverged from remote", syncBranch),
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Detail: "The remote sync branch was likely reset/force-pushed. Your local branch has orphaned history.",
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Fix: fmt.Sprintf("Reset local branch: git branch -D %s (it will be recreated on next bd sync)", syncBranch),
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}
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}
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// Check if local is behind remote (needs to fast-forward)
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mergeBase := strings.TrimSpace(string(mergeBaseOutput))
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cmd = exec.Command("git", "rev-parse", syncBranch) // #nosec G204 - syncBranch from config
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cmd.Dir = path
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localHead, _ := cmd.Output()
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localHeadStr := strings.TrimSpace(string(localHead))
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cmd = exec.Command("git", "rev-parse", remoteBranch) // #nosec G204 - remoteBranch from config
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cmd.Dir = path
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remoteHead, _ := cmd.Output()
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remoteHeadStr := strings.TrimSpace(string(remoteHead))
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// If merge base equals local but not remote, local is behind
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if mergeBase == localHeadStr && mergeBase != remoteHeadStr {
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// Count how far behind
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cmd = exec.Command("git", "rev-list", "--count", fmt.Sprintf("%s..%s", syncBranch, remoteBranch)) // #nosec G204 - branches from config
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cmd.Dir = path
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countOutput, _ := cmd.Output()
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behindCount := strings.TrimSpace(string(countOutput))
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusOK,
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Message: fmt.Sprintf("Local %s is %s commits behind remote (will sync)", syncBranch, behindCount),
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}
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}
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// Check 2: Is sync branch far behind main on source files?
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// Get the main branch name
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mainBranch := "main"
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cmd = exec.Command("git", "rev-parse", "--verify", "main")
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cmd.Dir = path
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if err := cmd.Run(); err != nil {
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// Try "master" as fallback
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cmd = exec.Command("git", "rev-parse", "--verify", "master")
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cmd.Dir = path
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if err := cmd.Run(); err != nil {
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// Can't determine main branch
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusOK,
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Message: "OK",
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}
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}
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mainBranch = "master"
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}
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// Count commits main is ahead of sync branch
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cmd = exec.Command("git", "rev-list", "--count", fmt.Sprintf("%s..%s", syncBranch, mainBranch)) // #nosec G204 - branches from config/hardcoded
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cmd.Dir = path
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aheadOutput, err := cmd.Output()
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if err != nil {
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusOK,
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Message: "OK",
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}
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}
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aheadCount := strings.TrimSpace(string(aheadOutput))
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// Check if there are non-.beads/ file differences (stale source code)
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cmd = exec.Command("git", "diff", "--name-only", fmt.Sprintf("%s..%s", syncBranch, mainBranch), "--", ":(exclude).beads/") // #nosec G204 - branches from config/hardcoded
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cmd.Dir = path
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diffOutput, _ := cmd.Output()
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diffFiles := strings.TrimSpace(string(diffOutput))
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if diffFiles != "" && aheadCount != "0" {
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// Count the number of different files
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fileCount := len(strings.Split(diffFiles, "\n"))
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// Parse ahead count as int for comparison
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aheadCountInt := 0
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_, _ = fmt.Sscanf(aheadCount, "%d", &aheadCountInt)
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// Only warn if significantly behind (20+ commits AND 50+ source files)
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// Small drift is normal between bd sync operations
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if fileCount > 50 && aheadCountInt > 20 {
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return DoctorCheck{
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Name: "Sync Branch Health",
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Status: StatusWarning,
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Message: fmt.Sprintf("Sync branch %s commits behind %s on source files", aheadCount, mainBranch),
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Detail: fmt.Sprintf("%d source files differ between %s and %s. The sync branch has stale code.", fileCount, syncBranch, mainBranch),
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Fix: fmt.Sprintf("Reset sync branch: git branch -f %s %s && git push --force-with-lease origin %s", syncBranch, mainBranch, syncBranch),
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}
|
|
}
|
|
}
|
|
|
|
return DoctorCheck{
|
|
Name: "Sync Branch Health",
|
|
Status: StatusOK,
|
|
Message: "OK",
|
|
}
|
|
}
|
|
|
|
// FixGitHooks fixes missing or broken git hooks by calling bd hooks install.
|
|
func FixGitHooks(path string) error {
|
|
return fix.GitHooks(path)
|
|
}
|
|
|
|
// FixMergeDriver fixes the git merge driver configuration to use correct placeholders.
|
|
func FixMergeDriver(path string) error {
|
|
return fix.MergeDriver(path)
|
|
}
|
|
|
|
// FixSyncBranchHealth fixes database-JSONL sync issues.
|
|
func FixSyncBranchHealth(path string) error {
|
|
return fix.DBJSONLSync(path)
|
|
}
|
|
|
|
// CheckOrphanedIssues detects issues referenced in git commits but still open.
|
|
// This catches cases where someone implemented a fix with "(bd-xxx)" in the commit
|
|
// message but forgot to run "bd close".
|
|
func CheckOrphanedIssues(path string) DoctorCheck {
|
|
// Skip if not in a git repo (check from path directory)
|
|
cmd := exec.Command("git", "rev-parse", "--git-dir")
|
|
cmd.Dir = path
|
|
if err := cmd.Run(); err != nil {
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusOK,
|
|
Message: "N/A (not a git repository)",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
|
|
beadsDir := filepath.Join(path, ".beads")
|
|
|
|
// Skip if no .beads directory
|
|
if _, err := os.Stat(beadsDir); os.IsNotExist(err) {
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusOK,
|
|
Message: "N/A (no .beads directory)",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
|
|
// Get database path from config or use canonical name
|
|
dbPath := filepath.Join(beadsDir, "beads.db")
|
|
if _, err := os.Stat(dbPath); os.IsNotExist(err) {
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusOK,
|
|
Message: "N/A (no database)",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
|
|
// Open database read-only
|
|
db, err := openDBReadOnly(dbPath)
|
|
if err != nil {
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusOK,
|
|
Message: "N/A (unable to open database)",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
defer db.Close()
|
|
|
|
// Get issue prefix from config
|
|
var issuePrefix string
|
|
err = db.QueryRow("SELECT value FROM config WHERE key = 'issue_prefix'").Scan(&issuePrefix)
|
|
if err != nil || issuePrefix == "" {
|
|
issuePrefix = "bd" // default
|
|
}
|
|
|
|
// Get all open issue IDs
|
|
rows, err := db.Query("SELECT id FROM issues WHERE status IN ('open', 'in_progress')")
|
|
if err != nil {
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusOK,
|
|
Message: "N/A (unable to query issues)",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
defer rows.Close()
|
|
|
|
openSet := make(map[string]bool)
|
|
for rows.Next() {
|
|
var id string
|
|
if err := rows.Scan(&id); err == nil {
|
|
openSet[id] = true
|
|
}
|
|
}
|
|
|
|
if len(openSet) == 0 {
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusOK,
|
|
Message: "No open issues to check",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
|
|
// Get issue IDs referenced in git commits
|
|
cmd = exec.Command("git", "log", "--oneline", "--all")
|
|
cmd.Dir = path
|
|
output, err := cmd.Output()
|
|
if err != nil {
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusOK,
|
|
Message: "N/A (unable to read git log)",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
|
|
// Parse commit messages for issue references
|
|
// Match pattern like (bd-xxx) or (bd-xxx.1) including hierarchical IDs
|
|
pattern := fmt.Sprintf(`\(%s-[a-z0-9.]+\)`, regexp.QuoteMeta(issuePrefix))
|
|
re := regexp.MustCompile(pattern)
|
|
|
|
// Track which open issues appear in commits (with first commit hash)
|
|
orphanedIssues := make(map[string]string) // issue ID -> commit hash
|
|
lines := strings.Split(string(output), "\n")
|
|
for _, line := range lines {
|
|
if line == "" {
|
|
continue
|
|
}
|
|
matches := re.FindAllString(line, -1)
|
|
for _, match := range matches {
|
|
// Extract issue ID (remove parentheses)
|
|
issueID := strings.Trim(match, "()")
|
|
if openSet[issueID] {
|
|
// Only record the first (most recent) commit
|
|
if _, exists := orphanedIssues[issueID]; !exists {
|
|
// Extract commit hash (first word of line)
|
|
parts := strings.SplitN(line, " ", 2)
|
|
if len(parts) > 0 {
|
|
orphanedIssues[issueID] = parts[0]
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
if len(orphanedIssues) == 0 {
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusOK,
|
|
Message: "No issues referenced in commits but still open",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
|
|
// Build detail message
|
|
var details []string
|
|
for id, commit := range orphanedIssues {
|
|
details = append(details, fmt.Sprintf("%s (commit %s)", id, commit))
|
|
}
|
|
|
|
return DoctorCheck{
|
|
Name: "Orphaned Issues",
|
|
Status: StatusWarning,
|
|
Message: fmt.Sprintf("%d issue(s) referenced in commits but still open", len(orphanedIssues)),
|
|
Detail: strings.Join(details, ", "),
|
|
Fix: "Run 'bd show <id>' to check if implemented, then 'bd close <id>' if done",
|
|
Category: CategoryGit,
|
|
}
|
|
}
|
|
|
|
// openDBReadOnly opens a SQLite database in read-only mode
|
|
func openDBReadOnly(dbPath string) (*sql.DB, error) {
|
|
return sql.Open("sqlite3", "file:"+dbPath+"?mode=ro")
|
|
}
|