Three changes to fix deleted issues resurrecting during bd sync:
1. daemon handleDelete now uses CreateTombstone instead of DeleteIssue
- internal/rpc/server_issues_epics.go
2. sync.go exportToJSONL now includes IncludeTombstones:true
- cmd/bd/sync.go
3. server_export_import_auto.go handleExport and auto-export now include
tombstones in SearchIssues filter
- internal/rpc/server_export_import_auto.go
Also adds README.md documentation for sync.branch mode (bd-dsdh):
- Explains "always dirty" working tree behavior
- Shell alias tip: gs='git status -- ":!.beads/"'
- When to use bd sync --merge
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>