docs: terminology sweep - add missing terms and unify patrol templates

Missing terms added:
- Stranded Convoy: convoy with ready work but no polecats (convoy.md)
- Shiny Workflow: canonical polecat formula (molecules.md)
- Health Check Commands: gt deacon health-check/health-state (reference.md)
- MQ Commands: gt mq list/submit/retry/etc (reference.md)

Patrol template fixes:
- Unified wisp spawn commands to use bd mol wisp consistently
- Fixed Refinery incorrect bd mol spawn --wisp (command does not exist)
- Fixed Deacon status=pinned to status=hooked
- Standardized startup protocol header naming
- Added Working Directory section to Witness and Refinery templates

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

docs/concepts/convoy.md

@@ -51,6 +51,7 @@ so you can see when it lands and what was included.
 |---------|-------------|-----|-------------|
 | **Convoy** | Yes | hq-cv-* | Tracking unit. What you create, track, get notified about. |
 | **Swarm** | No | None | Ephemeral. "The workers currently on this convoy's issues." |
+| **Stranded Convoy** | Yes | hq-cv-* | A convoy with ready work but no polecats assigned. Needs attention. |
 
 When you "kick off a swarm", you're really:
 1. Creating a convoy (the tracking unit)

docs/concepts/molecules.md

@@ -25,6 +25,7 @@ Protomolecule (frozen template) ─── Solid
 | **Molecule** | Active workflow instance with trackable steps |
 | **Wisp** | Ephemeral molecule for patrol cycles (never synced) |
 | **Digest** | Squashed summary of completed molecule |
+| **Shiny Workflow** | Canonical polecat formula: design → implement → review → test → submit |
 
 ## Common Mistake: Reading Formulas Directly
 

docs/reference.md

@@ -545,6 +545,24 @@ gt stop --all                # Kill all sessions
 gt stop --rig <name>         # Kill rig sessions
 ```
 
+### Health Check
+
+```bash
+gt deacon health-check <agent>   # Send health check ping, track response
+gt deacon health-state           # Show health check state for all agents
+```
+
+### Merge Queue (MQ)
+
+```bash
+gt mq list [rig]             # Show the merge queue
+gt mq next [rig]             # Show highest-priority merge request
+gt mq submit                 # Submit current branch to merge queue
+gt mq status <id>            # Show detailed merge request status
+gt mq retry <id>             # Retry a failed merge request
+gt mq reject <id>            # Reject a merge request
+```
+
 ## Beads Commands (bd)
 
 ```bash

internal/templates/roles/deacon.md.tmpl

@@ -152,7 +152,7 @@ gt mail inbox
 gt mol attach-from-mail <mail-id>
 
 # Step 3: Still nothing? Create patrol wisp (two-step: create then hook)
-bd mol wisp create mol-deacon-patrol
+bd mol wisp mol-deacon-patrol
 bd update <wisp-id> --status=hooked --assignee=deacon
 ```
 
@@ -238,8 +238,8 @@ Then squash and decide:
 bd mol squash <wisp-id> --summary="Patrol complete: checked inbox, scanned health, no issues"
 
 # Option A: Loop (low context)
-bd mol wisp create mol-deacon-patrol
-bd update <wisp-id> --status=pinned --assignee=deacon
+bd mol wisp mol-deacon-patrol
+bd update <wisp-id> --status=hooked --assignee=deacon
 # Continue to first step...
 
 # Option B: Exit (high context)

internal/templates/roles/refinery.md.tmpl

@@ -80,6 +80,14 @@ queue for your rig, merging polecat work to main one at a time with sequential r
 **The Scotty Test**: Before proceeding past any failure, ask yourself:
 "Would Scotty walk past a warp core leak because it existed before his shift?"
 
+## Working Directory
+
+**IMPORTANT**: Always work from `{{ .WorkDir }}` directory.
+
+Identity detection (for mail, mol status, etc.) depends on your current working
+directory. The refinery operates on the main branch worktree, so all commands work
+from this directory.
+
 ## 🔧 ZFC Compliance: Agent-Driven Decisions
 
 **You are the decision maker.** All merge/conflict decisions are made by you, the agent,
@@ -153,8 +161,9 @@ Then check your hook:
 gt hook                          # Shows hooked work (if any)
 bd list --status=in_progress --assignee=refinery
 
-# Step 2: If no patrol, spawn one
-bd mol spawn mol-refinery-patrol --wisp --assignee=refinery
+# Step 2: If no patrol, spawn one (two-step: create then hook)
+bd mol wisp mol-refinery-patrol
+bd update <wisp-id> --status=hooked --assignee={{ .RigName }}/refinery
 ```
 
 **No thinking. No "should I?" questions. Hook → Execute.**
@@ -290,7 +299,8 @@ Then squash and decide:
 bd mol squash <wisp-id> --summary="Patrol: merged 3 branches, no issues"
 
 # Option A: Loop (low context, more branches)
-bd mol spawn mol-refinery-patrol --wisp --assignee=refinery
+bd mol wisp mol-refinery-patrol
+bd update <wisp-id> --status=hooked --assignee={{ .RigName }}/refinery
 # Continue to inbox-check...
 
 # Option B: Exit (high context OR queue empty)
@@ -335,7 +345,8 @@ gt mail send {{ .RigName }}/<worker> -s "Rebase needed" \
 
 ### Patrol
 - `gt hook` - Check for hooked patrol
-- `bd mol spawn <mol> --wisp` - Spawn patrol wisp
+- `bd mol wisp <mol>` - Create patrol wisp
+- `bd update <wisp-id> --status=hooked --assignee=...` - Hook the wisp
 - `bd mol squash <id> --summary="..."` - Squash completed patrol
 
 ### Git Operations

internal/templates/roles/witness.md.tmpl

@@ -111,6 +111,14 @@ Your job:
 - Close issues for work you didn't do
 - Skip mol steps or hallucinate completion
 
+## Working Directory
+
+**IMPORTANT**: Always work from `{{ .WorkDir }}` directory.
+
+Identity detection (for mail, mol status, etc.) depends on your current working
+directory. The witness monitors polecats in this rig, so all commands work
+from this directory.
+
 ## Tools Overview
 
 ### Polecat Inspection
@@ -151,9 +159,9 @@ bd list --status=in_progress             # Active work in rig
 
 ---
 
-## 🚀 PROPULSION: The Universal Law
+## Startup Protocol: Propulsion
 
-> **If you find something on your hook, YOU RUN IT.**
+> **The Universal Gas Town Propulsion Principle: If you find something on your hook, YOU RUN IT.**
 
 There is no decision logic. No "should I?" questions. Check your hook, execute:
 
@@ -170,7 +178,7 @@ gt mail inbox
 gt mol attach-from-mail <mail-id>
 
 # Step 4: Still nothing? Create patrol wisp
-bd mol wisp create mol-witness-patrol
+bd mol wisp mol-witness-patrol
 bd update <wisp-id> --status=hooked --assignee={{ .RigName }}/witness
 ```