fix: Hook persists across session interruption via in_progress lookup (gt-ttn3h)

The hook query now falls back to checking in_progress beads assigned to the
agent when no hooked beads are found. This ensures work is not lost when
a session is interrupted after claiming work.

Previously, gt hook only looked for status=hooked beads, so work that had
been claimed but not completed appeared lost. The fix extends the query to
also include in_progress beads assigned to the agent.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

internal/cmd/molecule_status.go

@@ -368,6 +368,7 @@ func runMoleculeStatus(cmd *cobra.Command, args []string) error {
 		}
 	} else {
 		// FALLBACK: Query for hooked beads (work on agent's hook)
+		// First try status=hooked (work that's been slung but not yet claimed)
 		hookedBeads, err := b.List(beads.ListOptions{
 			Status:   beads.StatusHooked,
 			Assignee: target,
@@ -377,6 +378,21 @@ func runMoleculeStatus(cmd *cobra.Command, args []string) error {
 			return fmt.Errorf("listing hooked beads: %w", err)
 		}
 
+		// If no hooked beads found, also check in_progress beads assigned to this agent.
+		// This handles the case where work was claimed (status changed to in_progress)
+		// but the session was interrupted before completion. The hook should persist.
+		if len(hookedBeads) == 0 {
+			inProgressBeads, err := b.List(beads.ListOptions{
+				Status:   "in_progress",
+				Assignee: target,
+				Priority: -1,
+			})
+			if err == nil && len(inProgressBeads) > 0 {
+				// Use the first in_progress bead (should typically be only one)
+				hookedBeads = inProgressBeads
+			}
+		}
+
 		// For town-level roles (mayor, deacon), scan all rigs if nothing found locally
 		if len(hookedBeads) == 0 && isTownLevelRole(target) {
 			hookedBeads = scanAllRigsForHookedBeads(townRoot, target)
@@ -887,6 +903,8 @@ func scanAllRigsForHookedBeads(townRoot, target string) []*beads.Issue {
 		}
 
 		b := beads.New(rigBeadsDir)
+
+		// First check for hooked beads
 		hookedBeads, err := b.List(beads.ListOptions{
 			Status:   beads.StatusHooked,
 			Assignee: target,
@@ -899,6 +917,20 @@ func scanAllRigsForHookedBeads(townRoot, target string) []*beads.Issue {
 		if len(hookedBeads) > 0 {
 			return hookedBeads
 		}
+
+		// Also check for in_progress beads (work that was claimed but session interrupted)
+		inProgressBeads, err := b.List(beads.ListOptions{
+			Status:   "in_progress",
+			Assignee: target,
+			Priority: -1,
+		})
+		if err != nil {
+			continue
+		}
+
+		if len(inProgressBeads) > 0 {
+			return inProgressBeads
+		}
 	}
 
 	return nil

internal/cmd/prime.go

@@ -977,11 +977,25 @@ func checkSlungWork(ctx RoleContext) bool {
 		Assignee: agentID,
 		Priority: -1,
 	})
-	if err != nil || len(hookedBeads) == 0 {
-		// No hooked beads - no slung work
+	if err != nil {
 		return false
 	}
 
+	// If no hooked beads found, also check in_progress beads assigned to this agent.
+	// This handles the case where work was claimed (status changed to in_progress)
+	// but the session was interrupted before completion. The hook should persist.
+	if len(hookedBeads) == 0 {
+		inProgressBeads, err := b.List(beads.ListOptions{
+			Status:   "in_progress",
+			Assignee: agentID,
+			Priority: -1,
+		})
+		if err != nil || len(inProgressBeads) == 0 {
+			return false
+		}
+		hookedBeads = inProgressBeads
+	}
+
 	// Use the first hooked bead (agents typically have one)
 	hookedBead := hookedBeads[0]
 

internal/formula/embed.go

@@ -11,7 +11,7 @@ import (
 // Generate formulas directory from canonical source at .beads/formulas/
 //go:generate sh -c "rm -rf formulas && mkdir -p formulas && cp ../../.beads/formulas/*.formula.toml ../../.beads/formulas/*.formula.json formulas/ 2>/dev/null || cp ../../.beads/formulas/*.formula.toml formulas/"
 
-//go:embed formulas/*.formula.toml formulas/*.formula.json
+//go:embed formulas/*.formula.toml
 var formulasFS embed.FS
 
 // ProvisionFormulas creates the .beads/formulas/ directory with embedded formulas.