From d30cf5e48c7506797a32da982b2bff9d179d8e8a Mon Sep 17 00:00:00 2001
From: Steve Yegge <steve.yegge@gmail.com>
Date: Wed, 24 Dec 2025 21:33:30 -0800
Subject: [PATCH] bd sync: 2025-12-24 21:33:30

---
 .beads-wisp/beads.db | Bin 270336 -> 0 bytes
 .beads/issues.jsonl  |  12 ++++++++++--
 2 files changed, 10 insertions(+), 2 deletions(-)
 delete mode 100644 .beads-wisp/beads.db

diff --git a/.beads-wisp/beads.db b/.beads-wisp/beads.db
deleted file mode 100644
index 99cab4bc08e2b2916658cace1a4b1845e395dee5..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

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diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl
index 7ae056e7..e4c75dcd 100644
--- a/.beads/issues.jsonl
+++ b/.beads/issues.jsonl
@@ -9,6 +9,7 @@
 {"id":"gt-0asj","title":"Merge: gt-5af.5","description":"branch: polecat/Scabrous\ntarget: main\nsource_issue: gt-5af.5\nrig: gastown","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-19T17:50:25.227909-08:00","updated_at":"2025-12-19T17:52:57.683445-08:00","closed_at":"2025-12-19T17:52:57.683445-08:00"}
 {"id":"gt-0b1c","title":"Review: Refinery patrol template changes (gt-qz2l)","description":"Polecat dementus implemented refinery template changes: banners, wisp-based execution, propulsion protocol. Review for correctness and consistency with witness/deacon patterns.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-23T19:57:40.117102-08:00","updated_at":"2025-12-23T19:57:40.117102-08:00"}
 {"id":"gt-0c7s","title":"Add 'gt account default' command","description":"Set the default account in accounts.yaml. Used when no GT_ACCOUNT env or --account flag specified.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T03:24:20.55537-08:00","updated_at":"2025-12-23T04:00:20.170967-08:00","closed_at":"2025-12-23T04:00:20.170967-08:00","close_reason":"Implemented gt account default","dependencies":[{"issue_id":"gt-0c7s","depends_on_id":"gt-58tu","type":"blocks","created_at":"2025-12-23T03:24:34.811443-08:00","created_by":"daemon"}]}
+{"id":"gt-0cys","title":"Digest: mol-deacon-patrol","description":"Patrol 5: All healthy","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:26:42.913686-08:00","updated_at":"2025-12-24T21:26:42.913686-08:00","closed_at":"2025-12-24T21:26:42.913655-08:00","close_reason":"Squashed from 8 wisps","dependencies":[{"issue_id":"gt-0cys","depends_on_id":"gt-kj72","type":"parent-child","created_at":"2025-12-24T21:26:42.914344-08:00","created_by":"stevey"}]}
 {"id":"gt-0ei3","title":"Add molecules.jsonl as separate catalog file for template molecules","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-19T20:16:10.763471-08:00","updated_at":"2025-12-20T09:28:01.430495-08:00","closed_at":"2025-12-20T09:28:01.430495-08:00"}
 {"id":"gt-0iy3","title":"Merge: gt-3x1.3","description":"branch: polecat/Doof\ntarget: main\nsource_issue: gt-3x1.3\nrig: gastown","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-19T14:53:52.741123-08:00","updated_at":"2025-12-19T19:13:27.737052-08:00","closed_at":"2025-12-19T17:47:03.618858-08:00"}
 {"id":"gt-0l20","title":"decide-actions","description":"Apply nudge matrix and queue actions.\n\nProgressive nudge levels:\n- Level 1: Gentle reminder\n- Level 2: Stronger nudge\n- Level 3: Final warning\n- Level 4: Escalate to Mayor\n\nNeeds: inspect-workers","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T01:41:54.506634-08:00","updated_at":"2025-12-23T04:39:39.649471-08:00","closed_at":"2025-12-23T04:39:39.649471-08:00","close_reason":"Parent gt-751s superseded by Christmas Ornament pattern","dependencies":[{"issue_id":"gt-0l20","depends_on_id":"gt-751s","type":"parent-child","created_at":"2025-12-23T01:41:54.584193-08:00","created_by":"stevey"},{"issue_id":"gt-0l20","depends_on_id":"gt-o29j","type":"blocks","created_at":"2025-12-23T01:41:54.591628-08:00","created_by":"stevey"}]}
@@ -85,6 +86,8 @@
 {"id":"gt-3cns","title":"Test Patrol for Bonding","description":"Parent issue for mol bond CLI test","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T22:30:43.27929-08:00","updated_at":"2025-12-23T22:30:43.682201-08:00","closed_at":"2025-12-23T22:30:43.682201-08:00","close_reason":"Closed"}
 {"id":"gt-3cns.1","title":"Polecat Arm (arm-toast)","description":"Single polecat inspection and action cycle.\n\nThis molecule is bonded dynamically by mol-witness-patrol's survey-workers step.\nEach polecat being monitored gets one arm that runs in parallel with other arms.\n\n## Variables\n\n| Variable | Required | Description |\n|----------|----------|-------------|\n| polecat_name | Yes | Name of the polecat to inspect |\n| rig | Yes | Rig containing the polecat |\n\n## Step: capture\nCapture recent tmux output for toast.\n\n```bash\ntmux capture-pane -t gt-gastown-toast -p | tail -50\n```\n\nRecord:\n- Last activity timestamp (when was last tool call?)\n- Visible errors or stack traces\n- Completion indicators (\"Done\", \"Finished\", etc.)\n\n## Step: assess\nCategorize polecat state based on captured output.\n\nStates:\n- **working**: Recent tool calls, active processing\n- **idle**: At prompt, no recent activity\n- **error**: Showing errors or stack traces\n- **requesting_shutdown**: Sent LIFECYCLE/Shutdown mail\n- **done**: Showing completion indicators\n\nCalculate: minutes since last activity.\nNeeds: capture\n\n## Step: load-history\nRead nudge history for toast from patrol state.\n\n```\nnudge_count = state.nudges[toast].count\nlast_nudge_time = state.nudges[toast].timestamp\n```\n\nThis data was loaded by the parent patrol's load-state step and passed\nto the arm via the bonding context.\nNeeds: assess\n\n## Step: decide\nApply the nudge matrix to determine action for toast.\n\n| State | Idle Time | Nudge Count | Action |\n|-------|-----------|-------------|--------|\n| working | any | any | none |\n| idle | \u003c10min | any | none |\n| idle | 10-15min | 0 | nudge-1 (gentle) |\n| idle | 15-20min | 1 | nudge-2 (direct) |\n| idle | 20+min | 2 | nudge-3 (final) |\n| idle | any | 3 | escalate |\n| error | any | any | assess-severity |\n| requesting_shutdown | any | any | pre-kill-verify |\n| done | any | any | pre-kill-verify |\n\nNudge text:\n1. \"How's progress? Need any help?\"\n2. \"Please wrap up soon. What's blocking you?\"\n3. \"Final check. Will escalate in 5 min if no response.\"\n\nRecord decision and rationale.\nNeeds: load-history\n\n## Step: execute\nTake the decided action for toast.\n\n**nudge-N**:\n```bash\ntmux send-keys -t gt-gastown-toast \"{{nudge_text}}\" Enter\n```\n\n**pre-kill-verify**:\n```bash\ncd polecats/toast\ngit status                    # Must be clean\ngit log origin/main..HEAD     # Check for unpushed\nbd show \u003cassigned-issue\u003e      # Verify closed/deferred\n```\nIf clean: kill session, remove worktree, delete branch\nIf dirty: record failure, retry next cycle\n\n**escalate**:\n```bash\ngt mail send mayor/ -s \"Escalation: toast stuck\" -m \"...\"\n```\n\n**none**: No action needed.\n\nRecord: action taken, result, updated nudge count.\nNeeds: decide\n\n## Output\n\nThe arm completes with:\n- action_taken: none | nudge-1 | nudge-2 | nudge-3 | killed | escalated\n- result: success | failed | pending\n- updated_state: New nudge count and timestamp for toast\n\nThis data feeds back to the parent patrol's aggregate step.\n---\nbonded_from: mol-polecat-arm\nbonded_to: gt-3cns\nbonded_ref: arm-toast\nbonded_at: 2025-12-23T10:00:00Z\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T22:30:43.381581-08:00","updated_at":"2025-12-23T22:30:43.579835-08:00","closed_at":"2025-12-23T22:30:43.579835-08:00","close_reason":"Closed","dependencies":[{"issue_id":"gt-3cns.1","depends_on_id":"gt-3cns","type":"parent-child","created_at":"2025-12-23T22:30:43.382002-08:00","created_by":"daemon"}]}
 {"id":"gt-3cu","title":"Default polecat names: Mad Max theme instead of AdjectiveNoun","description":"Current default naming for new polecats uses AdjectiveNoun convention.\nSince rigs already provide namespacing, we can use more thematic names.\n\nSuggestion: Use Mad Max / Fury Road character and vehicle names as defaults.\nExamples: Furiosa, Nux, Slit, Morsov, Toast, Rictus, Warboy, etc.\n\nCould also include:\n- War Rig parts: Guzzler, Tanker, Pursuit\n- Citadel roles: Imperator, Blackthumb, Organic\n- Wasteland terms: Chrome, Witness, Shiny\n\nImplementation:\n- Add name generator in internal/polecat/ or similar\n- Use when --create flag is used without explicit name\n- Cycle through pool to avoid duplicates within a rig","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-17T14:50:43.252922-08:00","updated_at":"2025-12-17T14:50:43.252922-08:00"}
+{"id":"gt-3ep6","title":"Test Patrol Parent","description":"Test parent for Christmas Ornament pattern","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:24:17.54048-08:00","updated_at":"2025-12-24T21:24:17.809611-08:00","closed_at":"2025-12-24T21:24:17.809611-08:00","close_reason":"Closed"}
+{"id":"gt-3ep6.1","title":"Test Polecat Arm","description":"Test child for bonding pattern","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:24:17.623539-08:00","updated_at":"2025-12-24T21:24:17.717978-08:00","closed_at":"2025-12-24T21:24:17.717978-08:00","close_reason":"Closed","dependencies":[{"issue_id":"gt-3ep6.1","depends_on_id":"gt-3ep6","type":"parent-child","created_at":"2025-12-24T21:24:17.623915-08:00","created_by":"daemon"}]}
 {"id":"gt-3fm","title":"Mail orchestrator daemon","description":"Background mail orchestrator daemon.\n\n## Command\n```\ngt mail orchestrate [--interval N] [--once] [--verbose]\n```\n\n## Purpose\nBackground process that:\n1. Monitors outbox for pending mail\n2. Delivers to recipient inboxes\n3. Handles offline recipients (retry later)\n4. Cleans delivered messages from outbox\n\n## Why Needed?\nCurrent mail is synchronous. If recipient is offline or mailbox locked, send fails.\nOrchestrator enables async delivery with retry.\n\n## Implementation\n```go\nfunc (o *Orchestrator) Run(interval time.Duration) error {\n    ticker := time.NewTicker(interval)\n    for range ticker.C {\n        o.processOutbox()\n    }\n}\n\nfunc (o *Orchestrator) processOutbox() {\n    // List outbox/*.json\n    // For each, attempt delivery\n    // On success, delete from outbox\n    // On failure, increment retry count\n}\n```\n\n## Outbox Structure\n```\n\u003ctown\u003e/mayor/mail/outbox/\n├── msg-abc123.json\n└── msg-def456.json\n```\n\n## Lower Priority\nCurrent synchronous delivery works. Orchestrator is optimization.\n\n## Acceptance Criteria\n- [ ] Background daemon mode\n- [ ] Retry failed deliveries\n- [ ] --once for single pass\n- [ ] Configurable interval","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T14:48:29.830841-08:00","updated_at":"2025-12-16T16:07:35.973257-08:00"}
 {"id":"gt-3ndj","title":"Digest: mol-deacon-patrol @ 2025-12-24 19:44","description":"Patrol 7: All healthy","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T19:44:48.99583-08:00","updated_at":"2025-12-24T19:44:48.99583-08:00","closed_at":"2025-12-24T19:44:48.995758-08:00","close_reason":"Squashed from wisp gt-zim (9 issues)"}
 {"id":"gt-3njt","title":"Test Patrol Parent","description":"[RESURRECTED] This issue was deleted but recreated as a tombstone to preserve hierarchical structure.\n\nOriginal description:\nTest parent for Christmas Ornament pattern","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-23T22:27:56.249779-08:00","updated_at":"2025-12-24T00:18:03.036674-08:00","closed_at":"2025-12-23T23:59:26.977206-08:00","close_reason":"Closed"}
@@ -135,7 +138,6 @@
 {"id":"gt-4nn.2","title":"Molecule instantiation: create child beads from template","description":"When instantiating a molecule on a work bead:\n\n## Transaction Flow\n\n1. Parse molecule's `## Step:` sections from description\n2. Begin SQLite transaction\n3. For each step, create child issue:\n   - ID: `{parent-id}.{step-ref}` or generated\n   - Title: step title (from header or first line)\n   - Description: step prose instructions\n   - Type: task\n   - Priority: inherit from parent\n4. Add `instantiated-from` edge from each step to molecule:\n   ```sql\n   INSERT INTO dependencies (issue_id, depends_on_id, type, metadata)\n   VALUES (step_id, mol_id, 'instantiated-from', '{\"step\": \"implement\"}');\n   ```\n5. Wire inter-step dependencies from `Needs:` lines\n6. Commit transaction (atomic - all or nothing)\n\n## Parsing Conventions\n\n```markdown\n## Step: \u003cref\u003e\n\u003cprose instructions\u003e\nNeeds: \u003cstep\u003e, \u003cstep\u003e  # optional\nTier: haiku|sonnet|opus  # optional hint\n```\n\n## Parameterization\n\nSteps can have `{{variable}}` placeholders:\n```markdown\n## Step: implement\nImplement {{feature_name}} in {{target_file}}.\n```\n\nContext map provided at instantiation time.\n\n## API\n\n```go\nfunc (s *Store) InstantiateMolecule(mol *Issue, parent *Issue, ctx map[string]string) ([]*Issue, error)\nfunc ParseMoleculeSteps(description string) ([]MoleculeStep, error)\n```\n\nImplementation lives in `internal/beads/molecule.go`.","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-18T18:06:52.071066-08:00","updated_at":"2025-12-19T01:57:17.028198-08:00","closed_at":"2025-12-19T01:57:17.028198-08:00","dependencies":[{"issue_id":"gt-4nn.2","depends_on_id":"gt-4nn","type":"parent-child","created_at":"2025-12-18T18:06:52.072554-08:00","created_by":"daemon"},{"issue_id":"gt-4nn.2","depends_on_id":"gt-4nn.1","type":"blocks","created_at":"2025-12-18T18:07:02.949242-08:00","created_by":"daemon"}]}
 {"id":"gt-4nn.3","title":"Molecule CLI: bd molecule commands","description":"Add molecule commands to bd:\n\n## Commands\n\n```bash\nbd molecule list              # List molecules (type: molecule)\nbd molecule show \u003cid\u003e         # Show molecule with parsed steps\nbd molecule parse \u003cid\u003e        # Validate and show parsed structure  \nbd molecule instantiate \u003cmol-id\u003e --parent=\u003cissue-id\u003e  # Create steps\nbd molecule instances \u003cmol-id\u003e  # Show all instantiations\n```\n\n## gt spawn integration\n\n```bash\ngt spawn --issue \u003cid\u003e --molecule \u003cmol-id\u003e\n```\n\nThis should:\n1. Call `bd molecule instantiate` (creates child beads atomically)\n2. Spawn polecat on first ready step\n3. Polecat grinds through via `bd ready`\n\n## Output Examples\n\n```\n$ bd molecule show mol-abc\n\nmol-abc: Engineer in a Box\nType: molecule\n\nSteps (5):\n  design      → (ready first)\n  implement   → Needs: design\n  review      → Needs: implement\n  test        → Needs: implement  \n  submit      → Needs: review, test\n  \nInstances: 3\n```\n\n```\n$ bd molecule instances mol-abc\n\nParent          Status    Created\ngt-xyz          done      2025-12-15\ngt-abc          active    2025-12-17 (3/5 complete)\ngt-def          pending   2025-12-18\n```","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-18T18:06:53.919884-08:00","updated_at":"2025-12-19T12:00:37.165927-08:00","closed_at":"2025-12-19T12:00:37.165927-08:00","dependencies":[{"issue_id":"gt-4nn.3","depends_on_id":"gt-4nn","type":"parent-child","created_at":"2025-12-18T18:06:53.921621-08:00","created_by":"daemon"},{"issue_id":"gt-4nn.3","depends_on_id":"gt-4nn.2","type":"blocks","created_at":"2025-12-18T18:07:03.048941-08:00","created_by":"daemon"}]}
 {"id":"gt-4nn.4","title":"Built-in molecules: engineer-in-box, quick-fix, research","description":"Create built-in molecules as Beads issues:\n\n## engineer-in-box\n\n```markdown\nid: mol-engineer-in-box\ntype: molecule\ntitle: Engineer in a Box\n\nFull workflow from design to merge.\n\n## Step: design\nThink carefully about architecture. Consider:\n- Existing patterns in the codebase\n- Trade-offs between approaches  \n- Testability and maintainability\n\nWrite a brief design summary before proceeding.\n\n## Step: implement\nWrite the code. Follow codebase conventions.\nNeeds: design\n\n## Step: review\nSelf-review the changes. Look for:\n- Bugs and edge cases\n- Style issues\n- Missing error handling\nNeeds: implement\n\n## Step: test\nWrite and run tests. Cover happy path and edge cases.\nFix any failures before proceeding.\nNeeds: implement\n\n## Step: submit\nSubmit for merge via refinery.\nNeeds: review, test\n```\n\n## quick-fix\n\n```markdown\nid: mol-quick-fix\ntype: molecule  \ntitle: Quick Fix\n\nFast path for small changes.\n\n## Step: implement\nMake the fix. Keep it focused.\n\n## Step: test\nRun relevant tests. Fix any regressions.\nNeeds: implement\n\n## Step: submit\nSubmit for merge.\nNeeds: test\n```\n\n## research\n\n```markdown\nid: mol-research\ntype: molecule\ntitle: Research\n\nInvestigation workflow.\n\n## Step: investigate\nExplore the question. Search code, read docs, \nunderstand context. Take notes.\n\n## Step: document\nWrite up findings. Include:\n- What you learned\n- Recommendations\n- Open questions\nNeeds: investigate\n```\n\n## Storage\n\nBuilt-in molecules live in `\u003ctown\u003e/.beads/` as regular issues.\nCreated during `gt install` or `bd init`.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T18:07:04.574565-08:00","updated_at":"2025-12-19T12:02:19.332406-08:00","closed_at":"2025-12-19T12:02:19.332406-08:00","dependencies":[{"issue_id":"gt-4nn.4","depends_on_id":"gt-4nn","type":"parent-child","created_at":"2025-12-18T18:07:04.576587-08:00","created_by":"daemon"}]}
-{"id":"gt-4put","title":"execute-actions","description":"Send nudges, process shutdowns, escalate as decided.\n\nNeeds: decide-actions","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-23T16:18:21.59918-08:00","updated_at":"2025-12-23T16:18:21.59918-08:00","dependencies":[{"issue_id":"gt-4put","depends_on_id":"gt-qp2w","type":"parent-child","created_at":"2025-12-23T16:18:21.606851-08:00","created_by":"stevey"}]}
 {"id":"gt-4qey","title":"gt mail: Cross-level routing is broken","description":"When Mayor sends mail to rig worker, message lands in wrong beads database. Sender's beads vs recipient's.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:57:35.617292-08:00","updated_at":"2025-12-20T18:35:53.30276-08:00","closed_at":"2025-12-20T18:35:53.30276-08:00"}
 {"id":"gt-4u5z","title":"Refinery as Worktree: Local MR Integration","description":"Move refinery from separate clone to git worktree. Polecats stop pushing to origin - refinery sees their branches locally. MRs become wisps (ephemeral). Only main gets pushed after merge.\n\n## Goals\n- Origin stays clean (only main + beads-sync branches)\n- No orphaned polecat branches ever\n- Simpler mental model for MR coordination\n- Faster integration (no network for local MR ops)\n\n## Trade-offs\n- Machine crash = redo pending work (acceptable, beads track state)\n- Future federation needs different approach (bundles or integration branch)\n\n## Components Affected\n- Rig initialization (refinery setup)\n- Spawn/polecat workflow (remove origin push)\n- Refinery manager (local branch access)\n- Documentation (architecture, workflows)\n- Molecule templates (remove push instructions)","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-23T20:24:56.517669-08:00","updated_at":"2025-12-23T21:28:22.512455-08:00","closed_at":"2025-12-23T21:28:22.512455-08:00","close_reason":"Complete: refinery as worktree, local branches, wisp MRs"}
 {"id":"gt-4u5z.1","title":"Update rig init to create refinery as worktree","description":"Modify rig initialization to create refinery as a git worktree instead of a separate clone.\n\n## Changes\n- internal/rig/init.go or similar - change refinery setup\n- Create worktree at \u003crig\u003e/refinery/ with branch 'refinery'\n- Remove clone logic for refinery\n- Update any path assumptions\n\n## Considerations\n- Refinery worktree should track main (or its own branch?)\n- May need to handle existing rigs (migration path)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T20:25:25.927013-08:00","updated_at":"2025-12-23T20:31:07.100875-08:00","closed_at":"2025-12-23T20:31:07.100875-08:00","close_reason":"Rig init now creates refinery as worktree of mayor clone","dependencies":[{"issue_id":"gt-4u5z.1","depends_on_id":"gt-4u5z","type":"parent-child","created_at":"2025-12-23T20:25:25.92745-08:00","created_by":"daemon"}]}
@@ -176,11 +178,13 @@
 {"id":"gt-5ft3","title":"Merge: gt-99a","description":"branch: polecat/Slit\ntarget: main\nsource_issue: gt-99a\nrig: gastown","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T16:18:15.329358-08:00","updated_at":"2025-12-19T18:26:14.101606-08:00","closed_at":"2025-12-19T17:48:44.671082-08:00"}
 {"id":"gt-5ggc","title":"Digest: mol-deacon-patrol","description":"Patrol 4: All healthy","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:16:30.523256-08:00","updated_at":"2025-12-24T21:16:30.523256-08:00","closed_at":"2025-12-24T21:16:30.523221-08:00","close_reason":"Squashed from 8 wisps","dependencies":[{"issue_id":"gt-5ggc","depends_on_id":"gt-kjhb","type":"parent-child","created_at":"2025-12-24T21:16:30.523919-08:00","created_by":"stevey"}]}
 {"id":"gt-5gkd","title":"Refinery Engineer: Role prompting and CLAUDE.md","description":"Create refinery/CLAUDE.md with Chief Merge Engineer role context. Include:\n- Role identity and responsibilities\n- Decision authority (merge order, test frequency, binary rebuilds)\n- Communication patterns (Witness, Deacon)\n- Session lifecycle (handoff bead protocol)\n- Key commands reference","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-19T18:09:06.423153-08:00","updated_at":"2025-12-19T18:09:06.423153-08:00","dependencies":[{"issue_id":"gt-5gkd","depends_on_id":"gt-ktal","type":"blocks","created_at":"2025-12-19T18:09:39.217523-08:00","created_by":"daemon"}]}
+{"id":"gt-5glf","title":"Test Patrol for Bonding","description":"Parent issue for mol bond CLI test","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:32:00.941101-08:00","updated_at":"2025-12-24T21:32:01.304348-08:00","closed_at":"2025-12-24T21:32:01.304348-08:00","close_reason":"Closed"}
+{"id":"gt-5glf.1","title":"Polecat Arm (arm-toast)","description":"Single polecat inspection and action cycle.\n\nThis molecule is bonded dynamically by mol-witness-patrol's survey-workers step.\nEach polecat being monitored gets one arm that runs in parallel with other arms.\n\n## Variables\n\n| Variable | Required | Description |\n|----------|----------|-------------|\n| polecat_name | Yes | Name of the polecat to inspect |\n| rig | Yes | Rig containing the polecat |\n\n## Step: capture\nCapture recent tmux output for toast.\n\n```bash\ntmux capture-pane -t gt-gastown-toast -p | tail -50\n```\n\nRecord:\n- Last activity timestamp (when was last tool call?)\n- Visible errors or stack traces\n- Completion indicators (\"Done\", \"Finished\", etc.)\n\n## Step: assess\nCategorize polecat state based on captured output.\n\nStates:\n- **working**: Recent tool calls, active processing\n- **idle**: At prompt, no recent activity\n- **error**: Showing errors or stack traces\n- **requesting_shutdown**: Sent LIFECYCLE/Shutdown mail\n- **done**: Showing completion indicators\n\nCalculate: minutes since last activity.\nNeeds: capture\n\n## Step: load-history\nRead nudge history for toast from patrol state.\n\n```\nnudge_count = state.nudges[toast].count\nlast_nudge_time = state.nudges[toast].timestamp\n```\n\nThis data was loaded by the parent patrol's load-state step and passed\nto the arm via the bonding context.\nNeeds: assess\n\n## Step: decide\nApply the nudge matrix to determine action for toast.\n\n| State | Idle Time | Nudge Count | Action |\n|-------|-----------|-------------|--------|\n| working | any | any | none |\n| idle | \u003c10min | any | none |\n| idle | 10-15min | 0 | nudge-1 (gentle) |\n| idle | 15-20min | 1 | nudge-2 (direct) |\n| idle | 20+min | 2 | nudge-3 (final) |\n| idle | any | 3 | escalate |\n| error | any | any | assess-severity |\n| requesting_shutdown | any | any | pre-kill-verify |\n| done | any | any | pre-kill-verify |\n\nNudge text:\n1. \"How's progress? Need any help?\"\n2. \"Please wrap up soon. What's blocking you?\"\n3. \"Final check. Will escalate in 5 min if no response.\"\n\nRecord decision and rationale.\nNeeds: load-history\n\n## Step: execute\nTake the decided action for toast.\n\n**nudge-N**:\n```bash\ntmux send-keys -t gt-gastown-toast \"{{nudge_text}}\" Enter\n```\n\n**pre-kill-verify**:\n```bash\ncd polecats/toast\ngit status                    # Must be clean\ngit log origin/main..HEAD     # Check for unpushed\nbd show \u003cassigned-issue\u003e      # Verify closed/deferred\n```\nIf clean: kill session, remove worktree, delete branch\nIf dirty: record failure, retry next cycle\n\n**escalate**:\n```bash\ngt mail send mayor/ -s \"Escalation: toast stuck\" -m \"...\"\n```\n\n**none**: No action needed.\n\nRecord: action taken, result, updated nudge count.\nNeeds: decide\n\n## Output\n\nThe arm completes with:\n- action_taken: none | nudge-1 | nudge-2 | nudge-3 | killed | escalated\n- result: success | failed | pending\n- updated_state: New nudge count and timestamp for toast\n\nThis data feeds back to the parent patrol's aggregate step.\n---\nbonded_from: mol-polecat-arm\nbonded_to: gt-5glf\nbonded_ref: arm-toast\nbonded_at: 2025-12-23T10:00:00Z\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:32:01.027297-08:00","updated_at":"2025-12-24T21:32:01.207106-08:00","closed_at":"2025-12-24T21:32:01.207106-08:00","close_reason":"Closed","dependencies":[{"issue_id":"gt-5glf.1","depends_on_id":"gt-5glf","type":"parent-child","created_at":"2025-12-24T21:32:01.027725-08:00","created_by":"daemon"}]}
 {"id":"gt-5gsx","title":"Merge: gt-3x0z.3","description":"branch: polecat/slit\ntarget: main\nsource_issue: gt-3x0z.3\nrig: gastown","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-21T15:42:20.546839-08:00","updated_at":"2025-12-21T15:55:14.469773-08:00","closed_at":"2025-12-21T15:55:14.469773-08:00","close_reason":"Source branch lost, work needs to be redone"}
 {"id":"gt-5ipl","title":"Witness role describes incorrect commands","description":"prompts/roles/witness.md line 44 shows:\n  gt polecat list {{ rig }}\n\nBut polecats are worktrees managed by Refinery/Mayor's clone,\nnot a separate polecat manager. The witness shouldn't manage\npolecats directly.\n\nReview and update witness role to match actual architecture.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-24T12:51:44.558565-08:00","updated_at":"2025-12-24T12:51:44.558565-08:00","dependencies":[{"issue_id":"gt-5ipl","depends_on_id":"gt-jo9n","type":"blocks","created_at":"2025-12-24T12:52:08.074809-08:00","created_by":"daemon"}]}
 {"id":"gt-5j2x","title":"Test Patrol for Bonding","description":"Parent issue for mol bond CLI test","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:04:10.199911-08:00","updated_at":"2025-12-24T21:04:10.545614-08:00","closed_at":"2025-12-24T21:04:10.545614-08:00","close_reason":"Closed"}
 {"id":"gt-5j2x.1","title":"Polecat Arm (arm-toast)","description":"Single polecat inspection and action cycle.\n\nThis molecule is bonded dynamically by mol-witness-patrol's survey-workers step.\nEach polecat being monitored gets one arm that runs in parallel with other arms.\n\n## Variables\n\n| Variable | Required | Description |\n|----------|----------|-------------|\n| polecat_name | Yes | Name of the polecat to inspect |\n| rig | Yes | Rig containing the polecat |\n\n## Step: capture\nCapture recent tmux output for toast.\n\n```bash\ntmux capture-pane -t gt-gastown-toast -p | tail -50\n```\n\nRecord:\n- Last activity timestamp (when was last tool call?)\n- Visible errors or stack traces\n- Completion indicators (\"Done\", \"Finished\", etc.)\n\n## Step: assess\nCategorize polecat state based on captured output.\n\nStates:\n- **working**: Recent tool calls, active processing\n- **idle**: At prompt, no recent activity\n- **error**: Showing errors or stack traces\n- **requesting_shutdown**: Sent LIFECYCLE/Shutdown mail\n- **done**: Showing completion indicators\n\nCalculate: minutes since last activity.\nNeeds: capture\n\n## Step: load-history\nRead nudge history for toast from patrol state.\n\n```\nnudge_count = state.nudges[toast].count\nlast_nudge_time = state.nudges[toast].timestamp\n```\n\nThis data was loaded by the parent patrol's load-state step and passed\nto the arm via the bonding context.\nNeeds: assess\n\n## Step: decide\nApply the nudge matrix to determine action for toast.\n\n| State | Idle Time | Nudge Count | Action |\n|-------|-----------|-------------|--------|\n| working | any | any | none |\n| idle | \u003c10min | any | none |\n| idle | 10-15min | 0 | nudge-1 (gentle) |\n| idle | 15-20min | 1 | nudge-2 (direct) |\n| idle | 20+min | 2 | nudge-3 (final) |\n| idle | any | 3 | escalate |\n| error | any | any | assess-severity |\n| requesting_shutdown | any | any | pre-kill-verify |\n| done | any | any | pre-kill-verify |\n\nNudge text:\n1. \"How's progress? Need any help?\"\n2. \"Please wrap up soon. What's blocking you?\"\n3. \"Final check. Will escalate in 5 min if no response.\"\n\nRecord decision and rationale.\nNeeds: load-history\n\n## Step: execute\nTake the decided action for toast.\n\n**nudge-N**:\n```bash\ntmux send-keys -t gt-gastown-toast \"{{nudge_text}}\" Enter\n```\n\n**pre-kill-verify**:\n```bash\ncd polecats/toast\ngit status                    # Must be clean\ngit log origin/main..HEAD     # Check for unpushed\nbd show \u003cassigned-issue\u003e      # Verify closed/deferred\n```\nIf clean: kill session, remove worktree, delete branch\nIf dirty: record failure, retry next cycle\n\n**escalate**:\n```bash\ngt mail send mayor/ -s \"Escalation: toast stuck\" -m \"...\"\n```\n\n**none**: No action needed.\n\nRecord: action taken, result, updated nudge count.\nNeeds: decide\n\n## Output\n\nThe arm completes with:\n- action_taken: none | nudge-1 | nudge-2 | nudge-3 | killed | escalated\n- result: success | failed | pending\n- updated_state: New nudge count and timestamp for toast\n\nThis data feeds back to the parent patrol's aggregate step.\n---\nbonded_from: mol-polecat-arm\nbonded_to: gt-5j2x\nbonded_ref: arm-toast\nbonded_at: 2025-12-23T10:00:00Z\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:04:10.282891-08:00","updated_at":"2025-12-24T21:04:10.454575-08:00","closed_at":"2025-12-24T21:04:10.454575-08:00","close_reason":"Closed","dependencies":[{"issue_id":"gt-5j2x.1","depends_on_id":"gt-5j2x","type":"parent-child","created_at":"2025-12-24T21:04:10.283404-08:00","created_by":"daemon"}]}
-{"id":"gt-5klh","title":"Remove legacy .beads-wisp/ infrastructure","description":"The wisp simplification (gt-fgms + bd-bkul) changed wisps to be just a flag on issues in the main .beads/ database. JSONL export filters Wisp=true issues. No separate directory needed.\n\nBut legacy .beads-wisp/ infrastructure still exists and should be removed:\n\n## Gas Town (gt) cleanup:\n- `internal/rig/manager.go`: Remove `initWispBeads()` call from `AddRig()`\n- `internal/wisp/io.go`: Delete entire file (old abstraction layer)\n- `internal/cmd/install.go`: Remove any .beads-wisp setup\n- `docs/wisp-architecture.md`: Update to reflect 'just a flag' model\n\n## Beads (bd) cleanup:\n- `cmd/bd/doctor/wisp_check.go`: Remove WispExistsCheck, WispGitCheck, WispSizeCheck (check .beads-wisp dirs)\n- Keep WispOrphansCheck and WispStaleCheck but rewrite to query main DB for Wisp=true issues\n\n## Filesystem cleanup:\n- Delete ~/gt/.beads-wisp/\n- Delete ~/gt/gastown/.beads-wisp/\n- Delete all per-rig .beads-wisp/ directories\n- Remove .beads-wisp from .gitignore entries\n\n## Verify:\n- `gt mail send --wisp` still works (creates issue with Wisp=true in main DB)\n- `bd sync` still filters wisps from JSONL\n- `bd mol squash/burn` still work on Wisp=true issues","status":"open","priority":2,"issue_type":"chore","created_at":"2025-12-24T21:22:31.378327-08:00","updated_at":"2025-12-24T21:22:31.378327-08:00"}
+{"id":"gt-5klh","title":"Remove legacy .beads-wisp/ infrastructure","description":"The wisp simplification (gt-fgms + bd-bkul) changed wisps to be just a flag on issues in the main .beads/ database. JSONL export filters Wisp=true issues. No separate directory needed.\n\nBut legacy .beads-wisp/ infrastructure still exists and should be removed:\n\n## Gas Town (gt) cleanup:\n- `internal/rig/manager.go`: Remove `initWispBeads()` call from `AddRig()`\n- `internal/wisp/io.go`: Delete entire file (old abstraction layer)\n- `internal/cmd/install.go`: Remove any .beads-wisp setup\n- `docs/wisp-architecture.md`: Update to reflect 'just a flag' model\n\n## Beads (bd) cleanup:\n- `cmd/bd/doctor/wisp_check.go`: Remove WispExistsCheck, WispGitCheck, WispSizeCheck (check .beads-wisp dirs)\n- Keep WispOrphansCheck and WispStaleCheck but rewrite to query main DB for Wisp=true issues\n\n## Filesystem cleanup:\n- Delete ~/gt/.beads-wisp/\n- Delete ~/gt/gastown/.beads-wisp/\n- Delete all per-rig .beads-wisp/ directories\n- Remove .beads-wisp from .gitignore entries\n\n## Verify:\n- `gt mail send --wisp` still works (creates issue with Wisp=true in main DB)\n- `bd sync` still filters wisps from JSONL\n- `bd mol squash/burn` still work on Wisp=true issues","status":"open","priority":2,"issue_type":"chore","created_at":"2025-12-24T21:22:31.378327-08:00","updated_at":"2025-12-24T21:22:31.378327-08:00","comments":[{"id":2,"issue_id":"gt-5klh","author":"stevey","text":"Additional finding: wisps ARE leaking into town-level JSONL (~/gt/.beads/issues.jsonl). Saw hq-3g9e and hq-94i with wisp:true in the file. The filtering works for rig-level beads but apparently not town-level. Need to investigate why town beads uses different export path.","created_at":"2025-12-25T05:23:42Z"}]}
 {"id":"gt-5n2f","title":"Tech Debt: Code Review December 2024","description":"Tech debt identified during code review on 2024-12-21. Contains 11 issues ranging from P2-P4 covering:\n\n- Code duplication (manager creation boilerplate)\n- Test coverage gaps (cmd 6.8%, mail 3.6%)\n- Magic strings needing constants\n- Error handling inconsistencies\n- Large files needing splitting\n- Unused code removal\n\nWork through these incrementally to improve codebase maintainability.","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-21T21:37:36.114862-08:00","updated_at":"2025-12-21T22:20:12.869211-08:00","closed_at":"2025-12-21T22:20:12.869211-08:00","close_reason":"Tech debt review complete for launch. Completed:\n- gt-ai1z: Cycle detection in molecule deps\n- gt-7sqi: Manager boilerplate refactoring\n- gt-zhm5: Epic child filtering in Witness\n- gt-xnql: Constants for magic strings\n- gt-cvfg: io.Writer for refinery output\n- gt-nz6t: Removed unused style helpers\n\nAudited and closed:\n- gt-2xsh: Silent error handling (patterns are intentional)\n- gt-2n6z: Error wrapping (deferred to v0.2)\n\nDeferred to post-launch:\n- gt-480b: Test coverage (ongoing)\n- gt-92of: Large file splitting (refactoring)\n- gt-pbr3: Godoc comments (documentation)\n\nCodebase is launch-ready.","dependencies":[{"issue_id":"gt-5n2f","depends_on_id":"gt-ai1z","type":"blocks","created_at":"2025-12-21T21:37:45.973674-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-zhm5","type":"blocks","created_at":"2025-12-21T21:37:46.048395-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-7sqi","type":"blocks","created_at":"2025-12-21T21:37:46.120505-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-nz6t","type":"blocks","created_at":"2025-12-21T21:37:46.194096-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-xnql","type":"blocks","created_at":"2025-12-21T21:37:46.268652-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-480b","type":"blocks","created_at":"2025-12-21T21:37:46.341243-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-cvfg","type":"blocks","created_at":"2025-12-21T21:37:46.417073-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-92of","type":"blocks","created_at":"2025-12-21T21:37:46.489042-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-2xsh","type":"blocks","created_at":"2025-12-21T21:37:46.562771-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-2n6z","type":"blocks","created_at":"2025-12-21T21:37:46.63439-08:00","created_by":"daemon"},{"issue_id":"gt-5n2f","depends_on_id":"gt-pbr3","type":"blocks","created_at":"2025-12-21T21:37:46.706067-08:00","created_by":"daemon"}]}
 {"id":"gt-5qc","title":"Document how to configure a Gas Town Harness","description":"Create docs explaining what a harness is (private repo containing GT installation with rigs gitignored), why you'd want one, and how to set it up with beads redirects","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T16:42:43.370167-08:00","updated_at":"2025-12-19T12:00:39.274285-08:00","closed_at":"2025-12-19T12:00:39.274285-08:00","dependencies":[{"issue_id":"gt-5qc","depends_on_id":"gt-l1o","type":"blocks","created_at":"2025-12-17T16:42:54.620984-08:00","created_by":"daemon"},{"issue_id":"gt-5qc","depends_on_id":"gt-cr9","type":"blocks","created_at":"2025-12-17T17:15:59.17545-08:00","created_by":"daemon"}]}
 {"id":"gt-5tct","title":"gt mail send: add stdin and file input support for complex messages","description":"Current -m flag is fragile with multi-line messages containing backticks, quotes, or shell special chars. Add: 1) --stdin flag to read message body from stdin (heredoc-friendly), 2) -f/--file flag to read from file. This sidesteps shell quoting nightmares for handoff messages with code samples.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-23T03:47:50.514096-08:00","updated_at":"2025-12-23T03:47:50.514096-08:00"}
@@ -883,6 +887,8 @@
 {"id":"gt-rana.5","title":"Phase 2: Quiescent agents (Witness, Refinery)","description":"Enable Witness and Refinery to sleep until triggered.\n\n## Scope\n- Wake triggers: gt spawn, MR submit, mail, Deacon ping\n- Wake SLA: \u003c1 minute\n- mol-witness-patrol and mol-refinery-patrol definitions\n- Quiescent entry/exit protocol\n\n## Implementation\n- Kill tmux session on quiescent entry\n- Preserve sandbox (worktree, state files)\n- Restart session on wake trigger\n- Agent checks pinned, spawns default patrol if naked\n\nDepends: Phase 1 complete","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T13:39:12.926917-08:00","updated_at":"2025-12-21T13:39:12.926917-08:00","dependencies":[{"issue_id":"gt-rana.5","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:39:12.928741-08:00","created_by":"daemon"},{"issue_id":"gt-rana.5","depends_on_id":"gt-rana.4","type":"blocks","created_at":"2025-12-21T13:39:23.067953-08:00","created_by":"daemon"}]}
 {"id":"gt-rana.6","title":"Phase 3: Callbacks and plugins","description":"Mail-based callback protocol and plugin surface.\n\n## Callbacks\n- Polecat → Witness: shutdown requests\n- Witness → Deacon: escalations, status\n- Crew → Deacon: recycle requests\n- Deacon → Mayor: escalations\n\n## Plugins\n- .beads/plugins.yaml registry\n- Cooldown tracking\n- Plugin runner in deacon patrol\n\nDepends: Phase 2","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-21T13:39:14.120827-08:00","updated_at":"2025-12-21T13:39:14.120827-08:00","dependencies":[{"issue_id":"gt-rana.6","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:39:14.122713-08:00","created_by":"daemon"},{"issue_id":"gt-rana.6","depends_on_id":"gt-rana.5","type":"blocks","created_at":"2025-12-21T13:39:23.138268-08:00","created_by":"daemon"}]}
 {"id":"gt-rana.7","title":"Phase 4: Polish and observability","description":"Production readiness.\n\n## Commands\n- gt patrol status - Show patrol state for all agents\n- gt patrol history - Recent patrol activity\n\n## Observability\n- Metrics collection\n- Alert thresholds\n- Dashboard (optional)\n\n## Tuning\n- Cooldown optimization\n- Wake SLA verification\n- Error threshold tuning\n\nDepends: Phase 3","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-21T13:39:15.421608-08:00","updated_at":"2025-12-21T13:39:15.421608-08:00","dependencies":[{"issue_id":"gt-rana.7","depends_on_id":"gt-rana","type":"parent-child","created_at":"2025-12-21T13:39:15.423245-08:00","created_by":"daemon"},{"issue_id":"gt-rana.7","depends_on_id":"gt-rana.6","type":"blocks","created_at":"2025-12-21T13:39:23.209512-08:00","created_by":"daemon"}]}
+{"id":"gt-rbp6","title":"Test Patrol Parent","description":"Test parent for Christmas Ornament pattern","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:32:00.561088-08:00","updated_at":"2025-12-24T21:32:00.839375-08:00","closed_at":"2025-12-24T21:32:00.839375-08:00","close_reason":"Closed"}
+{"id":"gt-rbp6.1","title":"Test Polecat Arm","description":"Test child for bonding pattern","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:32:00.648392-08:00","updated_at":"2025-12-24T21:32:00.746561-08:00","closed_at":"2025-12-24T21:32:00.746561-08:00","close_reason":"Closed","dependencies":[{"issue_id":"gt-rbp6.1","depends_on_id":"gt-rbp6","type":"parent-child","created_at":"2025-12-24T21:32:00.64877-08:00","created_by":"daemon"}]}
 {"id":"gt-rivr","title":"Activity Feed TUI","description":"Terminal UI for browsing Gas Town activity. Shows hierarchical view of rigs, workers, and their current state. Features: live updates, expandable details, molecule progress (step X of Y). Built with bubbletea/lipgloss. Design doc: history/activity-feed-tui-design.md","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-23T16:26:45.667677-08:00","updated_at":"2025-12-23T16:26:45.667677-08:00"}
 {"id":"gt-rixa","title":"Bug: parseLifecycleRequest always matches 'cycle' due to LIFECYCLE prefix","description":"In lifecycle.go, parseLifecycleRequest checks strings.Contains(title, \"cycle\") first, but the prefix \"LIFECYCLE:\" contains the word \"cycle\". This means ALL lifecycle messages match the cycle action, making restart and shutdown unreachable. Fix: check for restart/shutdown before cycle, or use word boundaries.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T16:17:16.083512-08:00","updated_at":"2025-12-21T17:20:42.83084-08:00"}
 {"id":"gt-rm3","title":"CLI: gt refinery commands (start, stop, status, queue)","description":"CLI commands for managing the Refinery agent.\n\n## Commands\n\n```bash\ngt refinery start \u003crig\u003e      # Start refinery for a rig\ngt refinery stop \u003crig\u003e       # Stop refinery\ngt refinery status \u003crig\u003e     # Show refinery status\ngt refinery queue \u003crig\u003e      # Show merge queue\n```\n\n## gt refinery start\n\nStarts the Refinery daemon for the specified rig.\n\nOptions:\n- --foreground: Run in foreground (default: background)\n- --auto-merge: Enable auto-merge (default: from config)\n\n## gt refinery stop\n\nStops a running Refinery. Gracefully finishes current MR if processing.\n\n## gt refinery status\n\nShows:\n- Running state (running/stopped)\n- Current MR being processed (if any)\n- Queue length\n- Last merge time\n- Recent activity\n\n## gt refinery queue\n\nShows the merge queue:\n```\nMerge queue for 'wyvern':\n  1. [pending] Toast/polecat-auth-fix (15m ago)\n  2. [pending] Capable/polecat-new-feature (5m ago)\n  \n1 merged today, 0 rejected\n```\n\n## Implementation\n\nUses gt-ov2 (Refinery agent) for daemon functionality.","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-15T23:22:24.754361-08:00","updated_at":"2025-12-16T14:16:34.593637-08:00","closed_at":"2025-12-16T14:16:34.593637-08:00","dependencies":[{"issue_id":"gt-rm3","depends_on_id":"gt-ov2","type":"blocks","created_at":"2025-12-15T23:22:30.679909-08:00","created_by":"daemon"}]}
@@ -1084,6 +1090,8 @@
 {"id":"gt-zly","title":"Swarm learning: Beads database locality gap","description":"## PGT Bug (GGT Design Already Correct)\n\nMayor created issues in `~/ai/mayor/rigs/beads/.beads/` but polecats use `~/ai/beads/.beads/`. Different databases = polecats can't see Mayor's beads.\n\n**GGT Fix**: architecture.md already specifies:\n- All agents use BEADS_DIR pointing to rig-level `.beads/`\n- Lines 116-143: Beads Configuration for Multi-Agent\n- Lines 573-586: Rig-Level Beads via BEADS_DIR\n\nThis is a PGT implementation gap, not a design issue. GGT spawn must set BEADS_DIR correctly.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-16T01:21:45.37072-08:00","updated_at":"2025-12-16T01:28:40.74469-08:00","closed_at":"2025-12-16T01:28:40.74469-08:00"}
 {"id":"gt-zn9m","title":"142 instances of error suppression with _ = pattern","description":"Code has 142 instances of '_ = ' error suppression in non-test code.\nExamples:\n- internal/polecat/manager.go: _ = pool.Load() - ignores state loading\n- internal/daemon/notification.go: _ = os.WriteFile() - ignores file write\n- internal/mail/router.go: _ = r.notifyRecipient() - notification ignored\n\nThese create silent failures and hard-to-debug issues.\n\nOptions:\n1. Document intentional suppressions with comments\n2. Handle errors properly where appropriate\n3. At minimum, log suppressed errors at debug level","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-24T12:50:59.241303-08:00","updated_at":"2025-12-24T12:50:59.241303-08:00","dependencies":[{"issue_id":"gt-zn9m","depends_on_id":"gt-jo9n","type":"blocks","created_at":"2025-12-24T12:52:07.478225-08:00","created_by":"daemon"}]}
 {"id":"gt-zniu","title":"gt park command for parking molecules on external deps","description":"Add `gt park` command for when polecat hits external dependency:\n\n```bash\ngt park --step=gt-mol.3 --waiting=\"beads:mol-run-assignee\"\n```\n\nThis command:\n1. Adds blocked_by: external:beads:mol-run-assignee to the step\n2. Clears assignee on the step\n3. Clears assignee on molecule root\n4. Sends handoff mail to self with context\n5. Shuts down polecat session\n\nThe molecule enters \"parked\" state (derived: in_progress + no assignee + blocked step).\n\nPart of cross-project dependency system.\nSee: docs/cross-project-deps.md\n\nDepends on Beads: bd-om4a (external: blocked_by support)","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:39:01.401567-08:00","updated_at":"2025-12-21T22:39:01.401567-08:00"}
+{"id":"gt-zq7f","title":"Test Patrol for Bonding","description":"Parent issue for mol bond CLI test","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:24:17.909812-08:00","updated_at":"2025-12-24T21:24:18.25241-08:00","closed_at":"2025-12-24T21:24:18.25241-08:00","close_reason":"Closed"}
+{"id":"gt-zq7f.1","title":"Polecat Arm (arm-toast)","description":"Single polecat inspection and action cycle.\n\nThis molecule is bonded dynamically by mol-witness-patrol's survey-workers step.\nEach polecat being monitored gets one arm that runs in parallel with other arms.\n\n## Variables\n\n| Variable | Required | Description |\n|----------|----------|-------------|\n| polecat_name | Yes | Name of the polecat to inspect |\n| rig | Yes | Rig containing the polecat |\n\n## Step: capture\nCapture recent tmux output for toast.\n\n```bash\ntmux capture-pane -t gt-gastown-toast -p | tail -50\n```\n\nRecord:\n- Last activity timestamp (when was last tool call?)\n- Visible errors or stack traces\n- Completion indicators (\"Done\", \"Finished\", etc.)\n\n## Step: assess\nCategorize polecat state based on captured output.\n\nStates:\n- **working**: Recent tool calls, active processing\n- **idle**: At prompt, no recent activity\n- **error**: Showing errors or stack traces\n- **requesting_shutdown**: Sent LIFECYCLE/Shutdown mail\n- **done**: Showing completion indicators\n\nCalculate: minutes since last activity.\nNeeds: capture\n\n## Step: load-history\nRead nudge history for toast from patrol state.\n\n```\nnudge_count = state.nudges[toast].count\nlast_nudge_time = state.nudges[toast].timestamp\n```\n\nThis data was loaded by the parent patrol's load-state step and passed\nto the arm via the bonding context.\nNeeds: assess\n\n## Step: decide\nApply the nudge matrix to determine action for toast.\n\n| State | Idle Time | Nudge Count | Action |\n|-------|-----------|-------------|--------|\n| working | any | any | none |\n| idle | \u003c10min | any | none |\n| idle | 10-15min | 0 | nudge-1 (gentle) |\n| idle | 15-20min | 1 | nudge-2 (direct) |\n| idle | 20+min | 2 | nudge-3 (final) |\n| idle | any | 3 | escalate |\n| error | any | any | assess-severity |\n| requesting_shutdown | any | any | pre-kill-verify |\n| done | any | any | pre-kill-verify |\n\nNudge text:\n1. \"How's progress? Need any help?\"\n2. \"Please wrap up soon. What's blocking you?\"\n3. \"Final check. Will escalate in 5 min if no response.\"\n\nRecord decision and rationale.\nNeeds: load-history\n\n## Step: execute\nTake the decided action for toast.\n\n**nudge-N**:\n```bash\ntmux send-keys -t gt-gastown-toast \"{{nudge_text}}\" Enter\n```\n\n**pre-kill-verify**:\n```bash\ncd polecats/toast\ngit status                    # Must be clean\ngit log origin/main..HEAD     # Check for unpushed\nbd show \u003cassigned-issue\u003e      # Verify closed/deferred\n```\nIf clean: kill session, remove worktree, delete branch\nIf dirty: record failure, retry next cycle\n\n**escalate**:\n```bash\ngt mail send mayor/ -s \"Escalation: toast stuck\" -m \"...\"\n```\n\n**none**: No action needed.\n\nRecord: action taken, result, updated nudge count.\nNeeds: decide\n\n## Output\n\nThe arm completes with:\n- action_taken: none | nudge-1 | nudge-2 | nudge-3 | killed | escalated\n- result: success | failed | pending\n- updated_state: New nudge count and timestamp for toast\n\nThis data feeds back to the parent patrol's aggregate step.\n---\nbonded_from: mol-polecat-arm\nbonded_to: gt-zq7f\nbonded_ref: arm-toast\nbonded_at: 2025-12-23T10:00:00Z\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T21:24:17.992968-08:00","updated_at":"2025-12-24T21:24:18.160983-08:00","closed_at":"2025-12-24T21:24:18.160983-08:00","close_reason":"Closed","dependencies":[{"issue_id":"gt-zq7f.1","depends_on_id":"gt-zq7f","type":"parent-child","created_at":"2025-12-24T21:24:17.99343-08:00","created_by":"daemon"}]}
 {"id":"gt-zr0a","title":"bd pin command fails: invalid field for update: pinned","description":"In beads v0.32.0, `bd pin \u003cid\u003e` fails with 'invalid field for update: pinned'. The pinned field exists in the schema but update logic doesn't handle it.\n\nRepro:\n```\nbd create 'test issue'\nbd pin \u003cid\u003e\n# Error: invalid field for update: pinned\n```\n\nExpected: Issue should be pinned.\n\nThis blocks gt mail send --pinned from working.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T19:35:29.927326-08:00","updated_at":"2025-12-21T11:20:33.909055-08:00","closed_at":"2025-12-21T11:20:33.909055-08:00","close_reason":"Fixed by adding pinned to allowedUpdateFields"}
 {"id":"gt-ztm3","title":"Merge: gt-caih","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: gt-caih\nrig: gastown","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T00:14:08.420722-08:00","updated_at":"2025-12-23T01:18:52.590603-08:00","closed_at":"2025-12-23T01:18:52.590603-08:00","close_reason":"Already merged (duplicate MRs)"}
 {"id":"gt-zut3","title":"Immediate daemon notification on lifecycle request","description":"When gt handoff sends a lifecycle request to the daemon (via bd mail send deacon/), the daemon only discovers it on its next heartbeat poll (every 5 min). Workers wait unnecessarily for retirement.\n\n## Current Behavior\n1. Worker runs gt handoff\n2. Lifecycle mail sent to deacon/ via beads\n3. Worker blocks waiting for retirement\n4. Daemon heartbeat runs (up to 5 min later)\n5. Daemon processes lifecycle request and kills session\n\n## Expected Behavior\nLifecycle requests should be processed immediately, not on poll interval.\n\n## Proposed Solutions\n\n### Option A: SIGUSR1 Signal (simplest)\n1. Add SIGUSR1 handler in daemon that calls ProcessLifecycleRequests()\n2. gt handoff reads daemon.pid and sends SIGUSR1 after mail send\n\n### Option B: Unix Socket\n1. Daemon listens on ~/gt/daemon/lifecycle.sock\n2. gt handoff connects and sends 'process' message\n\n### Option C: Watchfile + fsnotify\n1. gt handoff touches ~/gt/daemon/lifecycle.trigger\n2. Daemon uses fsnotify to detect and process\n\nRecommend Option A for simplicity.\n\n## Affected Files\n- internal/daemon/daemon.go - add signal handler\n- internal/cmd/handoff.go - send signal after mail","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T20:20:07.616335-08:00","updated_at":"2025-12-20T20:27:42.419089-08:00","closed_at":"2025-12-20T20:27:42.419089-08:00"}