Reordered mol-sync-workspace.formula.toml so cleanup-worktrees runs after
handle-dirty-state instead of after run-tests. This is more logical:
worktree cleanup is housekeeping that should happen during workspace prep,
not after verification steps.
New execution order:
1. assess-state
2. handle-dirty-state
3. cleanup-worktrees ← moved here
4. sync-git
5. sync-beads → run-doctor → verify-build → run-tests
6. generate-report → signal-ready
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Previously, the Deacon patrol formula sent HEALTH_CHECK nudges to
Witnesses and Refineries on every patrol cycle (~1-2 minutes). This
disturbed idle agents constantly and wasted their context.
Now health check nudges are only sent when concerning signals are
detected:
- Agent not running or no heartbeat
- Status check hangs or fails
- Queue stuck or merge failures
The status commands (gt witness status, gt refinery status) provide
sufficient liveness info for healthy agents. Reserve nudges for
actual problems.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add gt deacon zombie-scan command that provides defense-in-depth
against Witness cleanup failures. The command:
- Scans all rigs for polecats that are idle, have no session running,
no hooked work, and are stale (>10 min inactive)
- Reports found zombies with details
- Optionally nukes them and notifies the mayor
Flags:
--dry-run Preview only
--threshold Custom staleness threshold (default 10m)
--nuke=false Report only, do not clean up
Also adds zombie-scan step to mol-deacon-patrol formula.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Expanded the sync-git step in mol-sync-workspace.formula.toml with detailed
guidance for Refinery agents on how to handle merge conflicts inline:
- Trivial conflicts: resolve immediately (imports, whitespace, etc.)
- Semantic conflicts: assess carefully before merging
- Complex conflicts: abort and notify polecat to rebase
- Judgment call principle: when in doubt, abort rather than risk broken main
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Introduces the leg prompt template system for convoy-style formulas:
- Base prompt template with context injection (PR, files, formula name)
- 7 specialized review legs (correctness, performance, security, elegance,
resilience, style, smells)
- Per-leg focus and description for polecat instructions
- Output format specification with structured findings template
- Synthesis step configuration for combining leg outputs
This formula demonstrates the template system pattern for parallel
polecat execution in convoy workflows.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Delete 5 legacy .formula.yaml files (have .toml replacements)
- Remove unused FileConfigYAML constant
- Add TODO for beads config.yaml → config.json migration (bd-10wg)
- Update docs to use JSON examples instead of yaml code blocks
- Change plugin frontmatter from YAML to TOML in docs
- Add .toml to code file detection in branch_check.go
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Use cwd-based detection instead of env-aware detection for gt hook status
display. This ensures we show the hook for the agent whose directory you're
in, not the agent from GT_ROLE env var.
Before: cd ~/gt/beads/crew/dave && gt hook → showed gastown/crew/joe (wrong)
After: cd ~/gt/beads/crew/dave && gt hook → shows beads/crew/dave (correct)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Updated mol-witness-patrol to properly clean up polecats that exit via
ESCALATED/DEFERRED (no MR). Previously, these polecats would sit idle
indefinitely waiting for a MERGED signal that would never come.
Changes:
- process-cleanups: Check for MR before sending MERGE_READY. If no MR
exists and polecat is clean, nuke immediately.
- survey-workers: Step 3a now handles both idle AND done polecats
without pending MR. Step 4a checks for MR before creating cleanup wisp.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The refinery was checking git branches instead of the beads merge queue.
This caused MRs to pile up when branches were deleted but MR beads remained.
- manager.go: Queue() now queries beads for type=merge-request issues
- refinery.md.tmpl: Updated queue-scan to use gt mq list
- mol-refinery-patrol.formula.toml: Updated queue-scan step instructions
- Add docs/hanoi-demo.md with full execution instructions
- Add scripts/gen_hanoi.py for generating larger formulas
- Include pre-generated 7-disk formula (127 moves)
- 9 and 10 disk formulas already committed
Speed test results: 127 issues close in 14 sec (~109ms each)
Expected 1K run time: ~2 minutes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- towers-of-hanoi-9: 511 moves (2^9 - 1)
- towers-of-hanoi-10: 1023 moves (2^10 - 1)
These are fully pre-computed move sequences for durability testing.
The 10-disk version creates 1026 beads issues when poured.
For million-step (20 disks), would need 163MB formula file.
Starting with 1K steps to prove the machinery works.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add title field to all steps (required by cook)
- Use hardcoded 3-disk solution (9 steps) as working proof
- Remove pseudo-syntax generate block (not implemented)
- Version bump to 2
Tested: bd cook --dry-run passes, mol pour creates valid molecule,
execution loop works (all 9 steps can be closed in sequence).
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add comprehensive execution protocol to formula description:
- EXECUTION LOOP: find ready step, close it, repeat
- ON RESUME: same as fresh start, molecule IS the state
- DO/DO NOT guidelines for autonomous execution
- MONITORING guidance for mega-molecules
This enables agents to execute Hanoi autonomously through restarts,
proving nondeterministic idempotence at scale.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add Step 3a to survey-workers that automatically nukes idle polecats
with clean git state. Only escalates to Mayor when uncommitted or
unpushed work is detected.
This reduces mail noise - idle polecats without work are pure overhead
and can be safely cleaned up without human intervention.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Changed table entry from 'Skip (no action needed)' to 'Auto-nuke if clean (Step 3a)'.
TODO: Add Step 3a section with full auto-nuke logic:
- Check git status for uncommitted changes
- Check for unpushed commits
- If clean: gt polecat nuke <name>
- If dirty: escalate to Mayor for recovery decision
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds explicit priming commands at the start of workspace assessment:
- gt prime: Load gt/mol context
- bd prime: Load beads context
Critical for fresh sessions, post-compaction, or context clear scenarios.
Also updates exit criteria to reflect priming requirement.
(gt-0xhuz)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add configurable build_command and test_command variables to the
mol-sync-workspace formula. Previously hardcoded to Go commands,
now supports any project type via variable configuration.
- Add build_command variable (default: go build ./...)
- Add test_command variable (default: go test ./...)
- Update verify-build step to use {{ build_command }}
- Update run-tests step to use {{ test_command }}
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Role templates (crew, polecat, mayor, deacon, witness, refinery)
- prime.go startup protocol messages
- Documentation (propulsion, reference, molecules, wisp architecture)
- Session hints and sling prompts
- Formula template instructions
- CLAUDE.md
The hook is the user-facing concept, molecules are implementation details.
Agents should use `gt hook` to check what work is assigned to them.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The health-scan step now includes gt nudge commands that serve dual purposes:
1. Liveness verification - agent responds to prove it's alive
2. Backoff reset - any nudge resets agent's backoff to base interval
This ensures patrol agents (witness/refinery) remain responsive even during
quiet periods when the feed has no mutations. Since Deacon patrols every
~1-2 minutes, maximum backoff is bounded by the ping interval.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Molecule for coordinated workspace sync across agents:
- Git pull/rebase with conflict preservation
- Beads sync and doctor check
- Build/test verification
- Worktree cleanup
- Readiness reporting
Designed for broadcast to all agents before batch assignments.
