- Delete builtin_molecules.go (empty stubs)
- Remove `mol export` command (exported 0 molecules)
- Clean dead code in catalog.go iterating empty BuiltinMolecules()
- Update docs to reference formula files instead of Go code
Molecules are now defined as .beads/formulas/*.formula.json files
and cooked into proto beads via `bd cook`.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Organize 43 commands into 7 logical groups using cobra's built-in
AddGroup/GroupID feature:
- Work Management: spawn, sling, hook, handoff, done, mol, mq, etc.
- Agent Management: mayor, witness, refinery, deacon, polecat, etc.
- Communication: mail, nudge, broadcast, peek
- Services: daemon, start, stop, up, down, shutdown
- Workspace: rig, crew, init, install, git-init, namepool
- Configuration: account, theme, hooks, issue, completion
- Diagnostics: status, doctor, prime, version, help
Also renamed molecule to mol as the primary command name
(molecule is now an alias).
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Wisps are now just a flag on regular beads issues (Wisp=true).
No separate directory needed - hooks stored in .beads/.
Changes:
- wisp package: WispDir now points to .beads/, removed PatrolCycle
- manager.go: removed initWispBeads() - no separate dir to create
- mrqueue.go: MRs stored in .beads/mq/ instead of .beads-wisp/mq/
- doctor: removed obsolete wisp directory checks
- docs: updated wisp-architecture.md to reflect simplified model
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Allows agents to self-pin work from mail messages. The command:
1. Reads a mail message by ID
2. Extracts molecule ID from the body (attached_molecule:, molecule_id:, etc.)
3. Attaches the molecule to the agent's pinned bead (hook)
4. Marks the mail as read
Includes unit tests for the molecule ID extraction logic.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implements a new command to query what an agent should be working on:
- Finds handoff bead by agent identity
- Parses attached molecule and tracks progress through steps
- Identifies current/next step (in_progress or first ready)
- Reports status: working, naked, complete, or blocked
Usage:
gt molecule current [identity]
gt mol current gastown/furiosa
gt mol current --json
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
TUI improvements for Christmas launch:
- Add phase transition table and lifecycle diagram to `gt molecule --help`
- Add swarm lifecycle diagram to `gt swarm --help`
- Add mail routing diagram to `gt mail --help`
- Add sling mechanics diagram to `gt sling --help`
- Create Lipgloss table helper (internal/style/table.go)
- Migrate mq_list to use styled tables with color-coded priorities
- Migrate molecule list to use styled tables
- Add fuzzy matching "did you mean" suggestions for polecat not found errors
- Add suggest package with Levenshtein distance implementation
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- gt mol catalog: list available molecule protos
- gt mol burn: burn current molecule without digest
- gt mol squash: compress molecule into digest
- Wire --wisp flag in gt sling to use .beads-wisp/ storage
- Add IsWisp field to MoleculeContext
- Update prompts/roles/deacon.md with correct commands
Closes: gt-x74c, gt-9t14, gt-i4i2
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add `gt mol status [target]` command to show what's on an agent's hook:
- Auto-detects current agent from working directory
- Shows pinned bead and attached molecule info
- Displays phase progress with progress bar
- Indicates wisp vs durable molecules
- Provides next action hints
Also adds `mol` alias for the `molecule` command.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implement AttachmentFields to track molecule attachments on pinned/handoff beads:
- AttachedMolecule: root issue ID of attached molecule
- AttachedAt: timestamp when attached
API:
- AttachMolecule(pinnedBeadID, moleculeID) - attach
- DetachMolecule(pinnedBeadID) - detach
- GetAttachment(pinnedBeadID) - query
- ParseAttachmentFields(issue) - parse from description
- FormatAttachmentFields(fields) - format for description
Includes comprehensive tests for parsing and API.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Added molecule workflow integration to Gas Town:
1. spawn.go: MoleculeContext in work assignment mail
- Shows step N/M and molecule ID in subject
- Includes molecule workflow instructions
- Guides polecat through DAG execution
2. prime.go: outputMoleculeContext()
- Detects if in-progress issue is a molecule step
- Shows molecule progress and next steps
- Displays molecule work loop instructions
3. molecule.go: 'gt molecule progress' command
- Shows execution progress for molecule root
- Displays done/in-progress/ready/blocked steps
- Progress bar and completion percentage
- JSON output for Witness automation
This enables polecats to work through molecule DAGs:
- Receive molecule-aware work assignments
- See context in gt prime output
- Follow DAG with 'bd ready --parent <root>'
- Witness can monitor with 'gt molecule progress'
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- molecule.go: Use findLocalBeadsDir() for project-level beads
- statusline.go: Use findMailWorkDir() for mail count (town beads)
Part of two-level beads architecture cleanup.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implement MoleculeCatalog for loading molecules from multiple sources:
1. Built-in molecules (shipped with the gt binary)
2. Town-level: <town>/.beads/molecules.jsonl
3. Rig-level: <rig>/.beads/molecules.jsonl
4. Project-level: .beads/molecules.jsonl
Changes:
- Add internal/beads/catalog.go with MoleculeCatalog type
- Update gt molecule list to show source (builtin, town, rig, project, database)
- Update gt molecule show to check catalog first, then database
- Update gt molecule instantiate to check catalog first
- Add gt molecule export command to export built-in molecules to JSONL
- Add --catalog and --db flags to gt molecule list
The catalog enables organizations to share molecule templates
independently of work item tracking, and allows customization
at different levels of the workspace hierarchy.
Closes gt-0ei3.
Generated with Claude Code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add `gt molecule` subcommands for managing workflow templates:
- list: Show all molecules (type=molecule issues)
- show: Display molecule with parsed step structure
- parse: Validate molecule and show parsed details
- instantiate: Create child beads from molecule template
- instances: Show all instantiations of a molecule
Also add `--molecule` flag to `gt spawn` for molecule-based workflows.
When specified, the molecule is instantiated on the parent issue first,
then the polecat is spawned on the first ready step.
🤝 Co-authored-by: Claude <noreply@anthropic.com>
