Reordered mol-sync-workspace.formula.toml so cleanup-worktrees runs after
handle-dirty-state instead of after run-tests. This is more logical:
worktree cleanup is housekeeping that should happen during workspace prep,
not after verification steps.
New execution order:
1. assess-state
2. handle-dirty-state
3. cleanup-worktrees ← moved here
4. sync-git
5. sync-beads → run-doctor → verify-build → run-tests
6. generate-report → signal-ready
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Expanded the sync-git step in mol-sync-workspace.formula.toml with detailed
guidance for Refinery agents on how to handle merge conflicts inline:
- Trivial conflicts: resolve immediately (imports, whitespace, etc.)
- Semantic conflicts: assess carefully before merging
- Complex conflicts: abort and notify polecat to rebase
- Judgment call principle: when in doubt, abort rather than risk broken main
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds explicit priming commands at the start of workspace assessment:
- gt prime: Load gt/mol context
- bd prime: Load beads context
Critical for fresh sessions, post-compaction, or context clear scenarios.
Also updates exit criteria to reflect priming requirement.
(gt-0xhuz)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add configurable build_command and test_command variables to the
mol-sync-workspace formula. Previously hardcoded to Go commands,
now supports any project type via variable configuration.
- Add build_command variable (default: go build ./...)
- Add test_command variable (default: go test ./...)
- Update verify-build step to use {{ build_command }}
- Update run-tests step to use {{ test_command }}
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Molecule for coordinated workspace sync across agents:
- Git pull/rebase with conflict preservation
- Beads sync and doctor check
- Build/test verification
- Worktree cleanup
- Readiness reporting
Designed for broadcast to all agents before batch assignments.
cheedo