Witness patrol: stale MR queue detection needs state tracking

The mol-witness-patrol check-refinery step says 'if queue is non-empty for >30 min, send nudge' but doesn't explain how to track when the queue first became non-empty.

## Problem
The Witness needs to persist:
- When MR queue first became non-empty
- Previous queue state for comparison

Without this, the Witness can't detect stale queues.

## Solution
Add to witness handoff bead:
- mr_queue_nonempty_since: timestamp
- Update in save-state step
- Check in check-refinery step


Digest: mol-deacon-patrol

Patrol 5


Detect abandoned work

**DETECT ONLY** - Check for orphaned state and dispatch to dog if found.

**Step 1: Quick orphan scan**
```bash
# Check for in_progress issues with dead assignees
bd list --status=in_progress --json | head -20
```

For each in_progress issue, check if assignee session exists:
```bash
tmux has-session -t <session> 2>/dev/null && echo "alive" || echo "orphan"
```

**Step 2: If orphans detected, dispatch to dog**
```bash
# Sling orphan-scan formula to an idle dog
gt sling mol-orphan-scan deacon/dogs --var scope=town
```

**Important:** Do NOT fix orphans inline. Dogs handle recovery.
The Deacon's job is detection and dispatch, not execution.

**Step 3: If no orphans detected**
Skip dispatch - nothing to do.

**Exit criteria:** Orphan scan dispatched to dog (if needed).


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 225/1023)


Digest: mol-deacon-patrol

Patrol 18


TIDY UP: Your previous work (patrol runner) was already m...

TIDY UP: Your previous work (patrol runner) was already merged to main. Check your git status is clean, sync beads, and if nothing to do, just run 'gt done'.


Day 3.1: Wire witness patrol formula to daemon cron

Witness patrol molecule runs on schedule:
- Daemon pokes witness on cron interval
- Witness runs mol-witness-patrol steps
- Results in wisp (ephemeral), squashed later

Parent: gt-hwka3


Move disk 1: B → C

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Move disk 1: B → C

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Move disk 1: C → A

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Refactor builtin_molecules.go (1620 lines)

## Summary

builtin_molecules.go is 1620 lines and growing. Should be split into:
- builtin_molecules.go - registration and common helpers
- molecules_patrol.go - patrol molecules (deacon, witness, refinery)
- molecules_work.go - work molecules (polecat-work, ready-work, engineer-in-box)
- molecules_session.go - session wrappers (crew-session, polecat-session)

## Benefits
- Easier to find/edit specific molecules
- Smaller diffs on changes
- Clear categorization


Move disk 4: C → B

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Merge: valkyrie-1767106008400

branch: polecat/valkyrie-1767106008400
target: main
source_issue: valkyrie-1767106008400
rig: gastown


Move disk 2: A → C

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Clean up stale children on deacon handoff bead

The deacon handoff bead hq-8r8 has 7 stale children (hq-8r8.1 through hq-8r8.7) from a previous patrol that got incorrectly parented. These should be cleaned up.

The handoff bead should only contain the attached_molecule reference, not instantiated steps.


Move disk 1: B → C

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Digest: mol-deacon-patrol

Patrol 8: all clear


Move disk 1: B → C

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gt polecat: add 'done' or 'finish' command to transition from working to idle

When a polecat finishes work but session wasn't properly cleaned up, there's no way to reset it from 'working' state back to 'idle'.

Tried:
```
gt polecat sleep gastown/Angharad
Error: sleeping polecat: polecat is not active (state: working)
```

The sleep command only works on 'active' polecats, not 'working' ones.

Had to manually edit state.json to reset:
```
jq '.state = "idle" | .issue = ""' state.json
```

Need a command like:
```
gt polecat done gastown/Angharad   # working -> idle
gt polecat finish gastown/Angharad # working -> idle
gt polecat reset gastown/Angharad  # any state -> idle (force)
```


Move disk 5: A → B

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Move disk 1: A → B

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Design org formula hierarchy pattern

Design how organizational formula hierarchies work.

## Pattern

    company-base.formula.yaml (org-wide policies)
      └── team-frontend.formula.yaml (extends company-base)
           └── project-dashboard.formula.yaml (extends team-frontend)

## Key Questions

1. How are org formulas discovered? (search path? explicit import?)
2. How do aspects merge across levels?
3. Can child override parent aspects?
4. How to handle aspect conflicts?

## Proposed Design

- Formulas use extends: just like today
- Aspect lists merge (child appends to parent)
- Child can exclude parent aspects via "exclude-aspects: [name]"
- Search path: local -> rig -> org (configurable)

## Deliverables

1. Document pattern in docs/formula-inheritance.md
2. Define conflict resolution rules
3. Identify implementation tasks


Digest: mol-deacon-patrol

Patrol 144: All healthy, 2 polecats working


Digest: mol-deacon-patrol

Patrol #2: Quick cycle, all witnesses running. No messages.


Digest: mol-deacon-patrol

Patrol cycle 14: all healthy


Digest: mol-deacon-patrol

Patrol 7: Quiet


gt spawn should use bd mol run for molecule attachment

Simplify Gas Town to use bd mol run for work tracking.

## Key Insight
Two distinct mechanisms, not duplicative:

| Mechanism | Purpose | Query |
|-----------|---------|-------|
| **Pinned molecule** (bd mol run) | What am I working on? | `bd list --pinned --assignee=me` |
| **Handoff mail** | Context notes for restart | `gt mail read` (self-addressed) |

The handoff is just **mail to yourself** - optional context notes.
The molecule is **the actual work** - required state.

## Current State (Overengineered)
Gas Town has custom attachment system:
- Permanent "Foo Handoff" pinned beads per identity
- AttachMolecule(pinnedBeadID, moleculeID)
- Attachment fields parsed from description
- Separate from beads pinning

## New Model (Simplified)
Use bd mol run directly:

```bash
# Spawn polecat with molecule
bd mol run mol-polecat-work --var issue=gt-xyz
# This: spawns, assigns to caller, pins root, sets in_progress
```

Query current work:
```bash
bd list --pinned --assignee=gastown/furiosa --status=in_progress
```

Handoff context (when needed):
```bash
gt mail send gastown/furiosa -s "Context notes" -m "Was on step 4..."
```

## Changes Required

### Remove from Gas Town
- AttachMolecule() / DetachMolecule()
- AttachmentFields struct and parsing
- GetAttachment() / SetAttachmentFields()
- Permanent pinned handoff beads per identity
- Daemon attachment detection (checkDeaconAttachment)

### Update gt spawn
```go
// Old: custom molecule instantiation + attachment
// New: just call bd mol run
cmd := exec.Command("bd", "mol", "run", protoID, "--var", "issue="+issueID)
```

### Update gt prime / agent context
```go
// Old: find handoff bead, parse attachment
// New: query for pinned molecule
cmd := exec.Command("bd", "list", "--pinned", "--assignee="+identity, "--status=in_progress", "--json")
```

### Update documentation
- Remove handoff bead attachment docs
- Clarify: handoff = mail, molecule = work
- Update CLAUDE.md templates

## Benefits
1. One system for work tracking (beads)
2. Simpler Gas Town code
3. bd mol squash works naturally
4. Handoff is just mail (already works)

## Related
- gt-3x0z: Wisp Molecule Integration
- gt-rana: Patrol System
- gt-lek6: gt rig reset --stale
- gt-ay1r: gt molecule current


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Auto-handoff: self-cycling with guaranteed work pickup

## Summary

A mechanism for agents to self-cycle: send handoff mail, request Deacon to kill the process, and automatically restart to pick up the work.

## Use Case

User says: `auto-handoff: gt-bug3`

The agent:
1. Sends handoff mail documenting current state
2. Requests Deacon to terminate the session
3. Deacon restarts the agent in background
4. New session picks up the handoff and continues working

When the user returns to terminal, the old session is gone but work continues in background. User can reattach.

## Key Requirements

- **Guaranteed pickup**: Something in the hook and/or handoff must ensure the new session picks up the work (not just a passive "check inbox")
- **Background execution**: Work continues without user presence
- **Reattachability**: User can reconnect to see progress

## Design Questions

1. Can molecules help coordinate this? (e.g., molecule binds the handoff + auto-restart)
2. What hook handles the pickup guarantee?
3. How does Deacon know to restart vs just kill?
4. How does user reattach to a background agent?

## Related

- Molecules system
- Deacon lifecycle management
- Handoff hooks


Add agent abstraction layer to support non-Claude agents

Currently Gas Town hardcodes 'claude --dangerously-skip-permissions' throughout the codebase for spawning agents. We should add an abstraction layer to support other AI agents (e.g., Gemini CLI, OpenAI agents, local models).

Locations that spawn Claude:
- internal/cmd/mayor.go:131
- internal/cmd/deacon.go:150
- internal/cmd/witness.go:280
- internal/cmd/crew.go (multiple locations)
- internal/cmd/up.go:190, 229
- internal/session/manager.go:146
- internal/refinery/manager.go:207

Suggested approach:
1. Create an agent package with an interface
2. Add configuration for agent type in town/rig config
3. Replace hardcoded claude commands with agent.Spawn() calls
4. Support agents: claude, gemini, openai, local (ollama, etc.)


Refactor formula transformation pipeline to shared helper

The formula transformation pipeline (control flow, advice, expansions, aspects) is duplicated between cook.go and mol_bond.go. Should be extracted to a shared function in the formula package.

Current duplication in:
- cmd/bd/cook.go:96-136
- cmd/bd/mol_bond.go:598-633

Suggested approach:
- Add formula.Transform(resolved *Formula, parser *Parser) (*Formula, error)
- Handles all transformation steps in order
- Both cook.go and mol_bond.go call this single function


Deacon Role Definition

You are the Deacon - the town-level lifecycle manager.

You run patrol cycles checking the health of all agents across all rigs,
nudging stuck workers, and managing session lifecycles.

session_pattern: gt-deacon
work_dir_pattern: {town}
needs_pre_sync: false
start_command: exec claude --dangerously-skip-permissions

default_molecule: mol-deacon-patrol
capabilities:
  - health_monitoring
  - session_lifecycle
  - cross_rig_visibility
  - agent_nudging

## Core Responsibilities

1. Run patrol cycles across all rigs
2. Monitor agent health and progress
3. Nudge stuck agents
4. Manage session lifecycles (kill/restart)
5. Escalate systemic issues to Mayor

## Patrol Cycle

Each patrol:
1. Check all agent sessions (gt status)
2. Identify stuck or idle agents
3. Nudge or restart as needed
4. Log patrol results
5. Sleep until next cycle

## Propulsion Principle

If you find something on your hook, YOU RUN IT.

Your work is the mol-deacon-patrol wisp. Execute patrol steps continuously.

## Commands

- gt status - Check all agents
- tmux kill-session -t <session> - Kill stuck session
- gt mail send <addr> - Communicate with agents
- gt mail send mayor/ - Escalate to Mayor

## Session Cycling

When context fills, hand off to fresh session:
gt handoff -s "Deacon patrol handoff" -m "Completed N cycles..."


Move disk 1: B → C

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Digest: mol-deacon-patrol

Patrol 9: healthy


Test patrol queue feature


Move disk 2: C → B

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Test Patrol Parent

[RESURRECTED] This issue was deleted but recreated as a tombstone to preserve hierarchical structure.

Original description:
[RESURRECTED] This issue was deleted but recreated as a tombstone to preserve hierarchical structure.

Original description:
Test parent for Christmas Ornament pattern


Test: Beads routing and redirects work correctly

Validate beads cross-rig routing:

## Test cases
- [ ] bd show <rig-prefix-id> routes to correct rig from town root
- [ ] bd show <hq-id> routes to town beads
- [ ] Redirect chains (.beads -> actual location) resolve correctly
- [ ] bd list works from polecat/crew directories
- [ ] Prefix conflicts detected

## Key scenarios
- Query from town root
- Query from rig directory
- Query from polecat worktree


Merge: slit-1767087730371

branch: polecat/slit-1767087730371
target: main
source_issue: slit-1767087730371
rig: gastown


Add gt mail announces command to list and read bulletin boards

Add announces subcommand to internal/cmd/mail.go.

COMMANDS:
1. gt mail announces - list available announce channels
2. gt mail announces <channel> - read messages from channel

BEHAVIOR for 'gt mail announces':
- Load messaging.json
- List all announce channel names
- Show reader count for each

BEHAVIOR for 'gt mail announces <channel>':
- Validate channel exists
- Query beads for messages with announce_channel=<channel>
- Display in reverse chronological order
- Do NOT mark as read or remove

FILE: internal/cmd/mail.go
ADD: announcesCmd as subcommand of mailCmd

TESTS: Add TestMailAnnounces


Digest: mol-deacon-patrol

Patrol 16: All clear


mol-refinery-patrol

Merge queue processor patrol loop.

The Refinery is the Engineer in the engine room. You process polecat branches, merging them to main one at a time with sequential rebasing.

**The Scotty Test**: Before proceeding past any failure, ask yourself: "Would Scotty walk past a warp core leak because it existed before his shift?"

## Merge Flow

The Refinery receives MERGE_READY mail from Witnesses when polecats complete work:

```
Witness                    Refinery                      Git
   │                          │                           │
   │ MERGE_READY              │                           │
   │─────────────────────────>│                           │
   │                          │                           │
   │                    (verify branch)                   │
   │                          │ fetch & rebase            │
   │                          │──────────────────────────>│
   │                          │                           │
   │                    (run tests)                       │
   │                          │                           │
   │                    (if pass)                         │
   │                          │ merge & push              │
   │                          │──────────────────────────>│
   │                          │                           │
   │ MERGED                   │                           │
   │<─────────────────────────│                           │
   │                          │                           │
```

After successful merge, Refinery sends MERGED mail back to Witness so it can
complete cleanup (nuke the polecat worktree).


Digest: mol-deacon-patrol

Patrol #10: Milestone - all agents healthy. 1 dog idle. Gastown MQ 1 pending.


load-context

Run gt prime and bd prime. Verify issue assignment.
Check inbox for any relevant messages.

Read the assigned issue (gt-u2vg) and understand the requirements.
Identify any blockers or missing information.


Merge: coma-mjwjczb0

branch: polecat/coma-mjwjczb0
target: main
source_issue: coma-mjwjczb0
rig: gastown
agent_bead: gt-gastown-polecat-coma


Digest: mol-deacon-patrol

Patrol 11


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 621/1023)


Merge: gt-72so

branch: polecat/Doof
target: main
source_issue: gt-72so
rig: gastown


Digest: mol-deacon-patrol

Patrol 148 complete


Digest: mol-deacon-patrol

Patrol cycle 24: All healthy, no incidents


Merge: capable-mjtltnm5

branch: polecat/capable-mjtltnm5
target: main
source_issue: capable-mjtltnm5
rig: gastown


Check own context limit

Check own context limit.

The Deacon runs in a Claude session with finite context. Check if approaching the limit:

```bash
gt context --usage
```

If context is high (>80%), prepare for handoff:
- Summarize current state
- Note any pending work
- Write handoff to molecule state

This enables the Deacon to burn and respawn cleanly.


Handle callbacks from agents

Handle callbacks from agents.

Check the Mayor's inbox for messages from:
- Witnesses reporting polecat status
- Refineries reporting merge results
- Polecats requesting help or escalation
- External triggers (webhooks, timers)

```bash
gt mail inbox
# For each message:
gt mail read <id>
# Handle based on message type
```

Callbacks may spawn new polecats, update issue state, or trigger other actions.


Digest: mol-deacon-patrol

Patrol 9: All healthy.


mol-polecat-lease

Semaphore tracking a single polecat's lifecycle.
Vars: {{polecat}}, {{issue}}

Used by Witness to track polecat lifecycle during patrol. The Witness bonds
this proto for each active polecat, creating a lease that tracks the polecat
from spawn through work to cleanup.

## Step: boot
Spawned. Verify it starts working.

Check if the polecat is alive and working:
```bash
gt peek {{polecat}}
```

If idle for too long, nudge:
```bash
gt nudge {{polecat}} "Please start working on your assigned issue."
```

Timeout: 60s before escalation to Mayor.

## Step: working
Actively working. Monitor for stuck.

The polecat is processing its assigned issue ({{issue}}).
Monitor via peek. Watch for:
- Progress on commits
- Status updates in beads
- SHUTDOWN mail when done

Wait for SHUTDOWN signal from the polecat.
Needs: boot

## Step: done
Exit received. Ready for cleanup.

The polecat has completed its work and sent SHUTDOWN.
Perform cleanup:
```bash
gt session kill {{polecat}}
gt worktree prune {{polecat}}
```

Update beads state and close the lease.
Needs: working


Verify gt daemon start/stop works

Verify the daemon orchestrator:

```bash
gt daemon start   # Should start and stay running
gt daemon status  # Should show running
gt daemon stop    # Should stop cleanly
```

The daemon is responsible for:
- Respawning the deacon when it exits (context exhaustion)
- Heartbeat monitoring
- Clean shutdown coordination

Test: Start, verify deacon session appears, stop, verify clean exit.


Code Smell Cleanup: Gas Town Code Quality

Comprehensive code smell cleanup identified in code review session.

## Scope
Fixes for duplication, thread safety, missing tests, inconsistent patterns, and dead code.

## Child issues (18 total)

### Thread Safety & Data Integrity (P2)
- gt-wled7: Atomic write pattern for state files
- gt-xtsb5: Fix namepool Save() mutex
- gt-bp0ht: Add swarm.Manager mutex

### Duplication Removal (P2)
- gt-560ge: Extract processExists function
- gt-ddw3y: Extract molecule_lifecycle boilerplate
- gt-atqr8: Session name helper functions
- gt-ov2uv: AgentIdentity type for parsing

### Missing Tests (P2)
- gt-p2eg5: Lock package tests
- gt-0vu9e: mrqueue package tests
- gt-1pelm: mail router/mailbox tests

### Code Quality (P2)
- gt-gcnnr: Add logging for ignored errors

### Constants Extraction (P3)
- gt-4u682: SupportedShells constant
- gt-795e8: Timing constants

### Refactoring (P3)
- gt-tkbd5: Refactor runStart
- gt-dsqxw: Refactor runStartCrew

### Error Handling (P3)
- gt-h3skz: Remove os.Exit from RunE
- gt-g6kor: Standardize warning output

### Dead Code (P4)
- gt-2g130: Remove unused code

## Acceptance criteria
- [ ] All child issues closed
- [ ] go build ./... passes
- [ ] go test ./... passes
- [ ] go test -race ./... passes


BUG: gt convoy create with count argument doesn't set convoy description

Root cause: 'gt convoy create' usage is 'create <name> [issues...]' but we invoked 'gt convoy create 1 beads' expecting polecat count semantics.

The '1' became the convoy name, 'beads' was treated as an issue ID (failed to track).

Options:
1. Add --count flag for polecat spawning semantics
2. When issues are added later via 'convoy add', update convoy title if current title is just a number
3. If first arg looks like an issue ID (has prefix), auto-generate name from issue title

For now, users must use: 'gt convoy create "Descriptive name" issue-id' not 'gt convoy create <count> <rig>'


mol-sync-workspace: Add Refinery-specific inline conflict resolution guidance


GT_ROLE env var not set correctly for crew workers


Wisp GC command

Implement bd wisp gc command that cleans orphaned wisps older than a threshold (default 1h). Safety net for wisps that escape normal burn-or-loop cleanup. Should run as part of Deacon patrol.


Move disk 1: B → C

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Move disk 1: B → C

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Digest: mol-deacon-patrol

Patrol #17: Health pinged all refineries.


Digest: mol-deacon-patrol

Patrol 3: Routine


bd cook command: Formula to Proto

Implement the 'bd cook' command that transforms formulas into protos.

Usage: bd cook <formula-file> [options]
       bd cook .beads/formulas/*.formula.yaml

Process:
1. Parse formula YAML (uses formula parser)
2. Resolve extends (formula inheritance)
3. Expand macros (expansion rules)
4. Apply aspects (cross-cutting concerns)
5. Generate flat proto bead

Output:
- Creates proto bead in .beads/ with mol-prefix
- Proto has all steps pre-expanded
- Proto is ready for pour/wisp instantiation

**Beads issue: bd-wa2l**


Move disk 4: B → A

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Digest: mol-deacon-patrol

Patrol 10: Quick cycle, 50% to handoff


Move disk 2: C → B

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Merge: valkyrie-mjxpdngw

branch: polecat/valkyrie-mjxpdngw
target: main
source_issue: valkyrie-mjxpdngw
rig: gastown
agent_bead: gt-gastown-polecat-valkyrie


Digest: mol-deacon-patrol

Cycle 4: healthy, refinery started


Move disk 1: B → C

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mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 27/1023)


Digest: mol-deacon-patrol

Patrol #9: Health pinged all refineries.


load-context

Run gt prime and bd prime. Verify issue assignment.
Check inbox for any relevant messages.

Read the assigned issue (gt-test) and understand the requirements.
Identify any blockers or missing information.


mol-deacon-patrol


Process witness mail

Process witness mail: lifecycle requests, help requests.

```bash
gt mail inbox
```

Handle by message type:
- **LIFECYCLE/Shutdown**: Queue for pre-kill verification
- **Blocked/Help**: Assess if resolvable or escalate
- **HANDOFF**: Load predecessor state
- **Work complete**: Verify issue closed, proceed to pre-kill

Record any pending actions for later steps.
Mark messages as processed when complete.


Move disk 4: A → C

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Move disk 3: C → A

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Test activity feed enhancement


Add gt mail claim command for queue message claiming

Add claim subcommand to internal/cmd/mail.go.

SYNTAX:
gt mail claim <queue-name>

BEHAVIOR:
1. List unclaimed messages in queue (claimed_by empty)
2. Pick oldest unclaimed message
3. Set claimed_by to caller identity
4. Set claimed_at to now
5. Print claimed message details

ELIGIBILITY CHECK:
- Load queue config from messaging.json
- Check if caller matches any pattern in workers list
- Reject if not eligible

FILE: internal/cmd/mail.go
ADD: claimCmd as subcommand of mailCmd

TESTS: Add TestMailClaim in mail_test.go or cmd_test.go


Move disk 1: C → A

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New Year's Launch: Single-Polecat Engine

# Tracer Bullet: Single-Polecat Engine

The minimal viable Gas Town: one polecat, one issue, one complete cycle.

## Vision

```
Deacon wakes → checks hook → spawns polecat → polecat works → polecat submits → loop
```

No Witness automation. No Refinery automation. Just the core propulsion loop.

## Key Insight: Molecules Are the Logic

Go code is connector/glue. The cognition lives in molecules. When the Deacon
wakes up, it reads its hook, finds a molecule, and WALKS IT. The molecule
says what to do. Go just provides the verbs (spawn, send, close).

## The Propulsion Principle

> If you find something on your hook, YOU RUN IT.

This is the universal Gas Town rule. Every agent, every wake-up:
1. Check hook
2. If mol → execute it
3. If nothing → wait for assignment

## Critical Path

1. **Slinging Handoff** - `gt sling <bead>` attaches work and restarts
2. **Hook Execution** - Agent wakes, primes, reads hook, runs hook
3. **Polecat Work Cycle** - Spawn → work → submit → complete
4. **Deacon Patrol** - The loop that spawns polecats

## Success Criteria

- `gt sling gt-xxx` restarts agent with work attached
- Agent wakes up and automatically begins work
- Single polecat completes one issue end-to-end
- Deacon can spawn polecats on demand

## Non-Goals (v0.1)

- Autonomous Witness nudging
- Autonomous Refinery merging
- Multi-polecat coordination
- Self-healing from crashes

These are v0.2+. Tracer bullet first.


Digest: mol-deacon-patrol

Patrol #15: 3/4 through


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 151/1023)


Design molecule parameterization

Enable protos to accept parameters for customization.

## Use Cases

1. rig-spinup needs rig name: `gt sling rig-spinup --param rig=newproject`
2. agent-restart needs agent: `gt sling agent-restart --param agent=gastown/witness`
3. code-review needs scope: `gt sling code-review --param scope=src/auth/`

## Proposed Syntax

### In Proto

```markdown
## Step: create-rig-structure
mkdir -p ~/gt/${rig}/refinery ~/gt/${rig}/witness
```

### In Sling

```bash
gt sling rig-spinup mayor/ --param rig=newproject --wisp
```

### In Bonded Molecule

Interpolation happens at bond time. Step descriptions have concrete values.

## Implementation

1. Proto declares params in frontmatter: `params: [rig]`
2. gt sling validates required params provided
3. bd mol bond receives params, interpolates descriptions
4. Bonded molecule has concrete step text

## Edge Cases

- Missing required param → error
- Unused param → warning
- Param in step title → interpolate there too


Digest: mol-deacon-patrol

Patrol 19: 3 rigs healthy


Digest: mol-deacon-patrol

Cycle 4: quiet patrol


Merge: nux-1767084010093

branch: polecat/nux-1767084010093
target: main
source_issue: nux-1767084010093
rig: gastown


gt convoy status: Show assignee and actual status for tracked issues

Currently convoy status shows all open issues as ○ with no distinction:

```
○ gt-27bzi: Add gt mail announces command [task]
○ gt-pn2fq: Add isAnnounceAddress() helpers [task]
○ gt-q73h3: Implement sendToAnnounce() [task]
```

But these issues have different statuses and assignees:
- gt-pn2fq: closed (immortan) - should show ✓
- gt-q73h3: hooked (bullet) - should show 🔨 or similar
- gt-27bzi: in_progress (toecutter) - should show ▶

## Proposed display

```
✓ gt-pn2fq: Add isAnnounceAddress() helpers [immortan]
▶ gt-q73h3: Implement sendToAnnounce() [bullet]
▶ gt-27bzi: Add gt mail announces command [toecutter]
```

Show actual status symbols and assignee in brackets.


Digest: mol-deacon-patrol

Patrol 19: All healthy


MVP Takeoff: Polecats just work

## Goal
Get to the point where we can sling any issue to a polecat with a formula and it "just works" end-to-end.

## Success Criteria
1. `gt daemon start` brings up the engine
2. Deacon patrols: inbox, health checks, cleanup
3. Witnesses patrol: monitor polecats, verify completion, cleanup
4. Refineries patrol: process merge queue
5. Polecat lifecycle: spawn → work → complete → cleanup
6. Shiny formula: design → implement → review → test → submit

## What This Enables
- "Engineer in a box" - take any issue, expand via shiny, get a reviewed/tested PR
- Reliable multi-agent coordination
- Self-healing infrastructure (patrols fix problems)

## Blocked By
- gt-ronyn (deacon murder bug) - FIXED
- Basic patrol formulas - DONE (mol-*-patrol.formula.toml exist)

## Children
See linked tasks below.


gt polecat add: should handle existing branch gracefully

## Problem

`gt polecat add gastown Nux` fails if the branch `polecat/Nux` already exists.

## Current Behavior

```
fatal: a branch named 'polecat/Nux' already exists
```

## Expected Behavior

Should either:
1. Reuse the existing branch
2. Or prompt to delete/recreate
3. Or auto-suffix: polecat/Nux-2

## Context

Branch may exist from previous polecat that was removed but branch wasn't cleaned up.


gt hook: Display mail details when mail bead hooked

When a mail bead is on hook, `gt hook` should show:
```
🪝 Hook: hq-xxx (mail)
   From: mayor/
   Subject: 🤝 HANDOFF: Swarm execution
   Run: gt mail read hq-xxx
```

Implementation in internal/cmd/hook.go


Move disk 2: B → A

Move disk 2 from peg B to peg A. (Move 70/1023)


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Test from Mayor

This is a test message via GGT mail


Digest: mol-deacon-patrol

Patrol 9: Quick cycle, all quiet


Move disk 5: B → C

Move disk 5 from peg B to peg C. (Move 240/1023)


gt-polecat-gastown-warboy

gt-polecat-gastown-warboy

role_type: polecat
rig: gastown
agent_state: spawning
hook_bead: null
role_bead: null


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 99/1023)


Resolve external dependencies

Resolve external dependencies across rigs.

When an issue in one rig closes, any dependencies in other rigs should be notified. This enables cross-rig coordination without tight coupling.

**Step 1: Check recent closures from feed**
```bash
gt feed --since 10m --plain | grep "✓"
# Look for recently closed issues
```

**Step 2: For each closed issue, check cross-rig dependents**
```bash
bd show <closed-issue>
# Look at 'blocks' field - these are issues that were waiting on this one
# If any blocked issue is in a different rig/prefix, it may now be unblocked
```

**Step 3: Update blocked status**
For blocked issues in other rigs, the closure should automatically unblock them (beads handles this). But verify:
```bash
bd blocked
# Should no longer show the previously-blocked issue if dependency is met
```

**Cross-rig scenarios:**
- bd-xxx closes → gt-yyy that depended on it is unblocked
- External issue closes → internal convoy step can proceed
- Rig A issue closes → Rig B issue waiting on it proceeds

No manual intervention needed if dependencies are properly tracked - this step just validates the propagation occurred.


Digest: mol-deacon-patrol

Patrol cycle 10: all healthy


Digest: mol-deacon-patrol

Patrol 2: inbox clear, all agents healthy


Digest: mol-deacon-patrol

Patrol 18: Quiet


Witness Patrol Molecule

Create mol-witness-patrol molecule for witness heartbeat loop.

Similar to DeaconPatrolMolecule but for per-rig witness duties.

## Steps
1. inbox-check - Process witness mail
2. survey-workers - List polecats, check status
3. inspect-workers - Capture pane output, assess state
4. plugin-run - Execute plugins from <rig>/plugins/witness/
5. decide-actions - Determine nudges, escalations
6. execute-actions - Send nudges, process shutdowns
7. context-check - Check own context, handoff if needed
8. loop-or-exit - Continue or cycle

The plugin-run step enables user customization of the patrol loop.


bd create --dedup: semantic deduplication before issue creation

Before creating issue, check for semantic duplicates using AI similarity.

**From VC**: internal/deduplication/ - AI-powered batch comparison. ~300 lines.
VC had issue pollution problem: 438 issues with ~350+ spam because no early dedup.

**Gas Town implementation**: CLI flag on bd create:
```bash
bd create --dedup --title="Fix auth bug" --description="..."
```

Checks recent issues (7-day window) with AI similarity. If confidence >0.85, warns or blocks.

**Value**: Prevents pollution from parallel workers discovering same issues.

**VC lesson**: 115 issues filed in single day (Nov 2) because supervisor over-discovered without dedup. Rate limiting + dedup are essential.


Merge: furiosa-mjw1p03l

branch: polecat/furiosa-mjw1p03l
target: main
source_issue: furiosa-mjw1p03l
rig: gastown
agent_bead: gt-gastown-polecat-furiosa


Digest: mol-deacon-patrol

Patrol 72: Routine


Move disk 2: C → B

Move disk 2 from peg C to peg B. (Move 414/1023)


Move disk 3: A → B

Move disk 3 from peg A to peg B. (Move 724/1023)


rebase-main

Rebase against main to incorporate any changes.
Resolve conflicts if needed.

git fetch origin main
git rebase origin/main

If there are conflicts, resolve them carefully and continue the rebase.

Depends: self-review, verify-tests


gt-gastown-polecat-nux

gt-gastown-polecat-nux

role_type: polecat
rig: gastown
agent_state: running
hook_bead: gt-s94gq
role_bead: gt-polecat-role
cleanup_status: has_uncommitted
active_mr: gt-qk7p7
notification_level: null


Digest: mol-deacon-patrol

Patrol cycle 16: All healthy


gt crew at/attach: Start session in crew workspace

Implement 'gt crew at <rig>/<name>' and 'gt crew attach <name>' commands:
- Start tmux session (optional - could just print cd instructions)
- Launch claude code in the workspace
- Deliver any pending mail
- Support --no-tmux to just print directory path
- 'attach' infers rig from cwd


Test molecule

Test


CLI: session commands (start, stop, at, list, capture, inject)

Session management CLI commands.

## Commands

### gt session start
Start a polecat session.
```
gt session start <rig>/<polecat> [--issue <id>]
```
- Creates tmux session
- Launches claude in polecat workdir
- Optionally injects initial issue context

### gt session stop
Stop a polecat session.
```
gt session stop <rig>/<polecat> [--force]
```
- Graceful shutdown by default
- --force kills immediately

### gt session at (attach)
Attach to running session.
```
gt session at <rig>/<polecat>
```
- Attaches tmux session to current terminal
- Detach with Ctrl-B D

### gt session list
List all sessions.
```
gt session list [--rig <rig>] [--json]
```
- Shows running/stopped status
- Optionally filter by rig

### gt session capture
Capture recent output from session.
```
gt session capture <rig>/<polecat> [--lines <n>]
```
- Default: last 100 lines
- Useful for checking polecat progress

### gt session inject
Send message to session.
```
gt session inject <rig>/<polecat> -m "message"
gt session inject <rig>/<polecat> -f <file>
```
- Injects text via tmux send-keys
- Used for nudges, notifications

## Address Format

`<rig>/<polecat>` e.g., `wyvern/Toast`

## Implementation

Session subcommand group:
```go
var sessionCmd = &cobra.Command{Use: "session"}
sessionCmd.AddCommand(startCmd, stopCmd, atCmd, listCmd, captureCmd, injectCmd)
```


Move disk 2: A → C

Move disk 2 from peg A to peg C. (Move 398/1023)


Witness patrol formula should document 'dead' agent state

## Problem

The witness patrol formula survey-workers step documents these agent states:

  agent_state: running|idle|stuck|done

But the daemon lifecycle (daemon/lifecycle.go:647) can set agent_state to 'dead'
when an agent goes unresponsive. This state isn't mentioned in the formula.

## Found in commit

f3a6ef6 (feat: Witness reads polecat state from agent beads)

## Suggested fix

Update the formula survey-workers step to include 'dead' in the state table:

| agent_state | Meaning | Action |
|-------------|---------|--------|
| running | Actively working | Check progress (Step 3) |
| idle | No work assigned | Skip (no action needed) |
| stuck | Self-reported stuck | Handle stuck protocol |
| done | Work complete | Verify cleanup triggered |
| dead | Marked dead by daemon | Clean up or respawn |


Digest: mol-deacon-patrol

Patrol cycle 14


gt formula command: Scaffold CLI with subcommands

Create internal/cmd/formula.go with subcommands:
- gt formula list - show available formulas
- gt formula show <name> - display formula details
- gt formula run <name> [--pr=N] - execute formula
- gt formula create <name> - create new formula template

Wire into rootCmd. Use cobra command groups.


Work on ga-xxp: Define mol-polecat-work standard molecule...

Work on ga-xxp: Define mol-polecat-work standard molecule. See bd show ga-xxp for full details.


Digest: mol-deacon-patrol

Patrol complete: reset 3 orphaned polecats (furiosa, nux, slit) to idle, all agents healthy


Include session ID in PropulsionNudge for /resume picker


Digest: mol-deacon-patrol @ 2025-12-24 19:26

Patrol 12: quiet


Add charmbracelet TUI dependencies (bubbletea, bubbles)

Add charmbracelet TUI framework dependencies.

## Dependencies to add
```
go get github.com/charmbracelet/bubbletea
go get github.com/charmbracelet/bubbles
```

## Already have
- github.com/charmbracelet/lipgloss (styling)

## Verify
- go mod tidy
- go build ./...

Quick task, just adding deps.


Digest: mol-deacon-patrol

Cycle 197: Nominal


mol-swarm-cleanup: Post-swarm debris cleanup molecule

After a 20+ worker swarm completed, found significant beads debris:
- 18 stale messages (work assignments, lifecycle requests, swarm instructions)
- 3 completed issues still open/in_progress
- Test messages accumulated

Need: Document a post-swarm checklist or create gt swarm cleanup command that:
1. Closes stale work assignment messages
2. Reviews in_progress issues for completion
3. Closes orphaned lifecycle messages
4. Optionally archives test messages


Digest: mol-deacon-patrol

Patrol 3: all clear


Merge: rictus-mjw3nj1a

branch: polecat/rictus-mjw3nj1a
target: main
source_issue: rictus-mjw3nj1a
rig: gastown
agent_bead: gt-gastown-polecat-rictus


Move disk 1: C → A

Move disk 1 from peg C to peg A. (Move 941/1023)


Digest: mol-deacon-patrol

Patrol 10: all healthy


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 543/1023)


gt sling reports hook occupied but bd hook shows empty

gt sling thinks a hook is occupied when bd hook shows it empty. Example: bd hook --agent beads/crew/dave shows (empty), but gt sling bd-hobo beads/crew/dave says 'hook already occupied by bd-ul59'. They should use the same source of truth (beads database pinned field).


Add convoy_test.go tests

convoy.go (525 lines) has no test coverage


Move disk 3: A → B

Move disk 3 from peg A to peg B. (Move 892/1023)


Worker cleanup: Beads sync on shutdown

Add beads sync verification to worker cleanup checklist and Witness verification.

## Update to Decommission Checklist (gt-sd6)

Add to pre-done verification:
- bd sync --status must show 'Up to date'
- git status .beads/ must show no changes

## Beads Edge Cases

Uncommitted beads changes:
  bd sync
  git add .beads/
  git commit -m 'beads: final sync'

Beads sync conflict (rare):
  git fetch origin main
  git checkout main -- .beads/
  bd sync --force
  git add .beads/
  git commit -m 'beads: resolve sync conflict'

## Update to Witness Verification (gt-f8v)

When capturing worker state:
  town capture <polecat> "bd sync --status && git status .beads/"

Check for:
- bd sync --status shows 'Up to date'
- git status .beads/ shows no changes

If beads not synced, nudge:
  WITNESS CHECK: Beads not synced. Run 'bd sync' then commit .beads/. Signal done when complete.


Move disk 2: B → A

Move disk 2 from peg B to peg A. (Move 574/1023)


Work assignment mail not received by polecat

When gt spawn sends a work assignment:

1. gt spawn says '✓ Work assignment sent'
2. Polecat runs 'gt mail inbox'
3. Shows '0 messages, 0 unread'

The work assignment mail never arrived at the polecat's inbox.

## Observed in session
- Spawned polecat dementus on gt-th7
- Polecat checked inbox: empty
- Polecat couldn't find issue (separate sync bug)

## Possible causes
- Mail routing issue for polecat addresses
- gt spawn not actually sending mail
- Mail sent to wrong address format

This was likely caused by stale beads in old polecats. With gt-9nf (fresh polecats), polecats now use shared rig beads via redirect file, eliminating sync issues. Mail routing uses town beads correctly.


Digest: mol-deacon-patrol

deacon patrol: 21 cycles complete


Daemon patrol should clean stale locks

The gt daemon patrol cycle should detect and clean up stale locks.

## Problem
If daemon crashes or there are orphaned locks, they can block operations indefinitely.

## Proposed Solution
During patrol cycle:
1. Check for lock files older than threshold (e.g., 5 minutes)
2. Verify owning process is dead (check PID if stored)
3. Remove stale locks
4. Log cleanup for audit


Merge: dementus-mjxlzpvv

branch: polecat/dementus-mjxlzpvv
target: main
source_issue: dementus-mjxlzpvv
rig: gastown
agent_bead: gt-gastown-polecat-dementus
retry_count: 0
last_conflict_sha: null
conflict_task_id: null


Digest: mol-deacon-patrol

Patrol 9: Mayor OK, 11 sessions


Move disk 2: A → C

Move disk 2 from peg A to peg C. (Move 1022/1023)


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 1/1023)


Polecat template: fix hard-to-parse sentence about persistence

This sentence is hard to parse: 'When in doubt, prefer bd—persistence you don't need beats lost context'. Rewrite for clarity, e.g., 'When in doubt, use bd for tracking - unnecessary persistence is better than lost context.'


Implement sendToAnnounce() for bulletin board delivery

Add announce message delivery to internal/mail/router.go.

SEMANTICS:
- ONE copy in shared location (not fan-out)
- Messages persist until retention limit reached
- No claiming, no removal on read

STORAGE:
- Location: {townRoot}/.beads/
- Metadata: announce_channel field to identify which channel

RETENTION:
- On send, count existing messages in channel
- If count >= retain_count, delete oldest
- retain_count=0 means unlimited

IMPLEMENTATION:
1. Add sendToAnnounce(msg *Message) error
2. Load AnnounceConfig from messaging.json
3. Validate sender is eligible (readers list) - optional
4. Create message bead with announce_channel metadata
5. Apply retention pruning

FILE: internal/mail/router.go
PATTERN: Similar to sendToQueue but no claiming


Move disk 2: C → B

Move disk 2 from peg C to peg B. (Move 246/1023)


Merge: beads-2nh

branch: fix/spawn-beads-path
target: main
source_issue: beads-2nh
rig: gastown


Implement mol bond command for dynamic child molecules

Add 'gt mol bond' command that creates child molecules at runtime with variable substitution.

Usage from mol-witness-patrol survey-workers step:
```bash
bd mol bond mol-polecat-arm $PATROL_WISP_ID \
  --ref arm-$polecat \
  --var polecat_name=$polecat \
  --var rig=<rig>
```

This creates child wisps like patrol-x7k.arm-ace with variables expanded.

Implementation:
1. Add 'bond' subcommand to mol command
2. Accept: proto ID, parent ID, --ref for child suffix, --var key=value pairs
3. Call InstantiateMolecule with Context map populated from --var flags
4. Return created child ID

Critical for Christmas Ornament pattern - without this, Witness cannot spawn per-polecat inspection arms.


Merge: furiosa-1767138824776

branch: polecat/furiosa-1767138824776
target: main
source_issue: furiosa-1767138824776
rig: gastown


mol-ready-work: graceful GitHub/label handling

## Summary

mol-ready-work assumes:
- GitHub repo exists with gh CLI configured
- Labels 'untriaged' and 'triaged' exist

Should handle gracefully:
1. No GitHub repo (beads-only project) → skip GH backlogs
2. Missing labels → skip that backlog tier, don't error
3. gh CLI not authenticated → warn and skip GH backlogs

## Implementation
Add checks in scan-backlogs step:
```bash
# Check if gh is available and authenticated
if gh auth status &>/dev/null; then
  # scan GH backlogs
fi
```

## Parent
Part of gt-tnca (mol-ready-work epic)


Merge: rictus-mjxc967h

branch: polecat/rictus-mjxc967h
target: main
source_issue: rictus-mjxc967h
rig: gastown
agent_bead: gt-gastown-polecat-rictus


Refinery patrol: Add banners and wisp-based execution

Bring Refinery patrol up to Deacon's level of sophistication:

## Current state
- mol-refinery-patrol exists (needs verification)
- Basic merge queue processing

## Needed
1. **Banners** - Print step banners like Deacon does:
   ```
   ═══════════════════════════════════════════════════════════════
     ⚗ QUEUE-CHECK
     Processing merge queue entries
   ═══════════════════════════════════════════════════════════════
   ```

2. **Wisp-based execution** - Spawn patrol as wisp, squash when complete
3. **Handoff bead attachment** - Refinery needs its own handoff bead with attached_molecule
4. **Loop-or-exit step** - Context-aware cycling like Deacon
5. **Patrol summary banner** at end of each cycle

## Reference
See Deacon patrol implementation in ~/gt/deacon/CLAUDE.md


Move disk 2: A → C

Move disk 2 from peg A to peg C. (Move 578/1023)


Refinery as Worktree: Local MR Integration

Move refinery from separate clone to git worktree. Polecats stop pushing to origin - refinery sees their branches locally. MRs become wisps (ephemeral). Only main gets pushed after merge.

## Goals
- Origin stays clean (only main + beads-sync branches)
- No orphaned polecat branches ever
- Simpler mental model for MR coordination
- Faster integration (no network for local MR ops)

## Trade-offs
- Machine crash = redo pending work (acceptable, beads track state)
- Future federation needs different approach (bundles or integration branch)

## Components Affected
- Rig initialization (refinery setup)
- Spawn/polecat workflow (remove origin push)
- Refinery manager (local branch access)
- Documentation (architecture, workflows)
- Molecule templates (remove push instructions)


Digest: mol-deacon-patrol

Patrol 124: All healthy


Digest: mol-deacon-patrol

Patrol 17: Quiet


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 841/1023)


gt spawn: Notify Deacon and Witness on polecat start

When gt spawn creates a polecat, it should mail both Deacon and Witness:

```
gt mail send <rig>/witness -s 'POLECAT_STARTED furiosa' -m 'Issue: gt-xxx'
gt mail send deacon/ -s 'POLECAT_STARTED gastown/furiosa' -m 'Issue: gt-xxx'
```

This enables:
- Witness to bond a lease to its patrol wisp
- Deacon to verify worker started (redundancy)
- Both to nudge if worker is idle at prompt

Part of the village self-monitoring architecture.


Fix failing beads tests: TestIntegration and TestPolecatWorkMolecule


Refinery: Implement mechanical rebase in-place

Update refinery to handle mechanical rebases without dispatching.

## Current Behavior
- Refinery detects rebase needed
- Sends mail to polecat asking for rebase
- Waits for polecat response

## New Behavior
- Refinery attempts `git rebase origin/main`
- If success (no conflicts): proceed to tests/merge
- If conflicts: abort, create conflict-resolution task

## Implementation
1. Update mol-refinery-patrol.formula.toml
2. Add rebase step between 'fetch' and 'test'
3. Handle conflict detection (exit code, conflict markers)
4. On conflict: `git rebase --abort`, create task, skip MR

## Tests
- Mechanical rebase succeeds
- Conflict detected and aborted
- Conflict task created with correct metadata


Digest: mol-deacon-patrol

Patrol cycle 20: All agents healthy, handoff threshold reached


Digest: mol-deacon-patrol

Patrol 7: all healthy


Crew worker max in gastown - human-managed persistent workspace.

role_type: crew
rig: gastown
agent_state: running
hook_bead: null
role_bead: gt-crew-role
cleanup_status: has_uncommitted


Merge: capable-mjxb80jf

branch: polecat/capable-mjxb80jf
target: main
source_issue: capable-mjxb80jf
rig: gastown
agent_bead: gt-gastown-polecat-capable


gt sling/handoff fails: slashes in agent identity create invalid hook paths


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


mol-deacon-patrol


Digest: mol-deacon-patrol

Patrol 4: Quiet


Epic: Fix swarm orchestration - witness/refinery/polecat lifecycle

## Problem Statement

The bd-9115 swarm execution required excessive manual intervention from Mayor. The witness, refinery, and polecat lifecycle components didn't coordinate automatically.

## What Should Have Happened

```
Mayor slings 6 beads to rig
    ↓
Polecats auto-spawn with synced beads, work pinned
    ↓
Polecats work autonomously
    ↓
Witness monitors progress, nudges stuck polecats
    ↓
Polecat completes → pushes branch → signals completion
    ↓
Refinery detects ready branch → rebases → merges → deletes branch
    ↓
Witness detects merge → nukes polecat worktree
    ↓
When all done → Witness notifies Mayor
```

## What Actually Happened

1. **gt sling failed to pin beads** - polecat worktrees had stale JSONL
2. **Manual intervention** - had to checkout latest JSONL, pin, nudge each polecat
3. **Witness was passive** - never nudged or checked on polecats
4. **Refinery waited for requests** - didn't detect completed branches
5. **Manual lifecycle** - Mayor had to close beads, nuke polecats
6. **Manual merge coordination** - had to mail refinery with merge order

## Root Cause: Branch Hysteresis

Polecat branches persist across runs and drift from main/beads-sync:
- `polecat/foo` created weeks ago from old main
- New work slung to `polecat/foo`
- JSONL in branch doesn't have new beads
- Pin fails

## Open Questions

### Q1: Fresh branches per run?
Should each polecat spawn create a NEW branch from latest main/beads-sync?
```
gt sling bd-xxx rig
  → creates polecat/foo-20251227-1630 from origin/main
  → ensures JSONL is current
  → after merge, branch deleted forever
```
Pros: No drift, always current
Cons: Branch proliferation, naming complexity

### Q2: Rebase existing branches?
Or should we rebase persistent polecat branches before work?
```
gt sling bd-xxx rig/foo
  → git fetch origin
  → git rebase origin/main
  → now JSONL is current
```
Pros: Keeps simple naming
Cons: Rebase can fail with conflicts

### Q3: Just cherry-pick JSONL?
Minimal fix - grab latest JSONL before pinning:
```
git checkout origin/beads-sync -- .beads/issues.jsonl
bd import  # refresh DB
bd pin bd-xxx
```
Pros: Simple, surgical
Cons: Doesn't fix code drift, just beads

### Q4: Shared beads DB?
Could polecats share a DB (via symlink or sqlite over network)?
Pros: Always consistent
Cons: Locking complexity, daemon conflicts

### Q5: Who owns polecat lifecycle?
- Witness? (current assumption)
- Refinery? (after merge)
- gt sling? (on spawn)
- New "foreman" role?

## Proposed Solutions

See child issues for implementation details. Need to resolve open questions first.


E2E Swarm Test Epic


Digest: mol-deacon-patrol

Patrol cycle 2: All healthy


Deacon health pings clear agent backoff

Deacon's periodic health checks also clear patrol agent backoff.

## Current Flow (mol-deacon-patrol)

Deacon already pings witnesses/refineries for health checks. These pings should:
1. Verify agent is alive
2. Clear their backoff as side effect

## Implementation

In mol-deacon-patrol health-scan step:
- gt nudge <rig>/witness 'HEALTH_CHECK from deacon'
- gt nudge <rig>/refinery 'HEALTH_CHECK from deacon'

Receiving agent:
- Responds to prove liveness
- Resets backoff to base interval

## Ping Interval

Deacon patrols every ~1-2 minutes. This ensures:
- Maximum backoff is bounded by deacon ping interval
- Even if daemon misses activity, deacon catches up


Digest: mol-deacon-patrol

Cycle 3: quiet patrol


Switch formulas from JSON to TOML

## Problem
Formula JSON files have poor ergonomics for agents and humans:
- Multi-line strings require `\n` escaping
- Diffs are hard to read (long single-line changes)
- No comments allowed

## Solution
Switch formulas to TOML format:

```toml
formula = "mol-deacon-patrol"
version = 1
description = """
Mayor's daemon patrol loop.
Multi-line strings work naturally.
"""

[[steps]]
id = "inbox-check"
title = "Handle callbacks"
description = """
Check inbox for messages.

```bash
gt mail inbox
```
"""
```

## Tasks
- [ ] Add TOML parsing for formulas (github.com/BurntSushi/toml)
- [ ] Update formula loader to try .toml first, fall back to .json
- [ ] Add `bd formula convert <name>` to migrate JSON → TOML
- [ ] Convert existing formulas
- [ ] Update docs

## Notes
- Keep issues.jsonl as-is (machine data, append-only)
- TOML only for human-edited formula files


Digest: mol-deacon-patrol

Patrol 106: All healthy


Digest: mol-deacon-patrol

Patrol 154 complete


Session ended: gt-gastown-ace


Daemon: proper rig discovery

Currently discovers rigs by scanning tmux session names for gt-*-witness pattern. Should instead:
- Read rigs from mayor/rigs.json
- Or scan town directory for .gastown subdirs
- Handle rigs that exist but don't have running witnesses


Move disk 3: A → B

Move disk 3 from peg A to peg B. (Move 148/1023)


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Idle Town Principle

**The Deacon should be silent/invisible when the town is healthy and idle.**

- Skip HEALTH_CHECK nudges when no active work exists
- Sleep 60+ seconds between patrol cycles (longer when idle)
- Let the feed subscription wake agents on actual events
- The daemon (10-minute heartbeat) is the safety net for dead sessions

This prevents flooding idle agents with health checks every few seconds.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Add display guards for large molecules

bd mol current and convoy displays need guards:
- If steps > 100, show summary instead of list
- Add --range flag for viewing specific step ranges
- Convoy panel shows count + percentage, not child list


Digest: mol-deacon-patrol

Patrol 24: All quiet


Nudge newly spawned polecats

Nudge newly spawned polecats that are ready for input.

When polecats are spawned, their Claude session takes 10-20 seconds to initialize. The spawn command returns immediately without waiting. This step finds spawned polecats that are now ready and sends them a trigger to start working.

**ZFC-Compliant Observation** (AI observes AI):

```bash
# View pending spawns with captured terminal output
gt deacon pending
```

For each pending session, analyze the captured output:
- Look for Claude's prompt indicator "> " at the start of a line
- If prompt is visible, Claude is ready for input
- Make the judgment call yourself - you're the AI observer

For each ready polecat:
```bash
# 1. Trigger the polecat
gt nudge <session> "Begin."

# 2. Clear from pending list
gt deacon pending <session>
```

This triggers the UserPromptSubmit hook, which injects mail so the polecat sees its assignment.

**Bootstrap mode** (daemon-only, no AI available):
The daemon uses `gt deacon trigger-pending` with regex detection. This ZFC violation is acceptable during cold startup when no AI agent is running yet.


Move disk 2: A → C

Move disk 2 from peg A to peg C. (Move 674/1023)


ZFC #5: Move merge/conflict decisions from Go to Refinery agent

**ZFC Violation:** internal/refinery/manager.go:389-517

Go code currently makes engineering decisions in ProcessMR():
- Detect conflicts via string matching
- Decide to abort merge
- Decide to roll back on test failure
- Decide retry strategy

**Current anti-pattern:**
```go
if strings.Contains(errStr, "CONFLICT") {
    result.Conflict = true
    _ = m.gitRun("merge", "--abort")
    // Go decides what to do
}
```

**ZFC-compliant solution:**
Refinery AGENT runs the merge loop:
- Agent attempts merge
- Agent detects conflict and decides: retry, notify polecat, escalate
- Agent runs tests and decides: proceed, rollback, retry
- Go provides git operations, agent makes decisions

**Relates to:** Day 3.4 (Refinery processes MERGE_READY mail) but needs explicit agent decision-making

Reference: ~/gt/docs/zfc-violations-audit.md #5


Digest: mol-deacon-patrol

Patrol 2: No changes from cycle 1, all healthy


Refactor all startup paths to use StartupNudge

## Files to Refactor

| File | Function | Current Approach |
|------|----------|------------------|
| start.go:788 | runStartCrew | SendKeys(claude) then SendKeys(gt prime) |
| start.go:747 | runStartCrew restart | Same |
| start.go:929 | another path | SendKeys without prime |
| crew_lifecycle.go:354 | restart | SendKeys(gt prime) after start |
| crew_lifecycle.go:525 | another path | Same |
| crew_at.go:154 | --detached | Claude arg "gt prime" ✓ |
| handoff.go:331 | handoff | Claude arg "gt prime" ✓ |
| deacon.go:294 | deacon start | Relies on hooks |
| witness.go:336 | witness start | Relies on hooks |
| polecat_spawn.go | spawn | Various |

## Pattern
Replace scattered logic with:
```go
cfg := StartupNudgeConfig{
    Recipient: address,
    Sender:    sender,
    Topic:     "cold-start",  // or "handoff", mol-id, etc.
}
if err := session.StartupNudge(t, sessionName, cfg); err \!= nil {
    // handle
}
```

## Dependencies
- gt-bgfqy: Create StartupNudge function
- gt-dc2fs: Add runtime configuration


Digest: mol-deacon-patrol

Patrol cycle 12: All 6 agents healthy


Digest: mol-deacon-patrol

Patrol cycle 58: All healthy


Digest: mol-deacon-patrol

Patrol 14


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 69/1023)


Digest: mol-deacon-patrol

Cycle 12


Human escalation path design

Flesh out the human escalation mechanism for Gas Town errors. Currently: errors mail Mayor, Mayor startup prompts about escalations. Need: structured escalation channel, escalation severity levels, and clear documentation. All edge cases in molecular algebra can write warnings to this channel.


Merge: capable-mjtltnm5

branch: polecat/capable-mjtltnm5
target: main
source_issue: capable-mjtltnm5
rig: gastown


Digest: mol-deacon-patrol


Move disk 5: B → C

Move disk 5 from peg B to peg C. (Move 336/1023)


Move disk 1: C → A

Move disk 1 from peg C to peg A. (Move 221/1023)


Fanout gate runtime evaluation

Aggregate step uses waits-for: all-children. Deacon must evaluate this gate by checking if all dynamically-bonded arm children are complete. If no children bonded, gate passes immediately.


Fetch remote and identify polecat branches waiting.

```bash
git fetch origin
git branch -r | grep polecat
gt refinery queue <rig>
```

If queue empty, skip to context-check step.
Track branch list for this cycle.

instantiated_from: mol-refinery-patrol
step: queue-scan


gt crew stop <rig> [name] | --all - stop crew workers

Stop crew workers in a rig. Can specify a name to stop one, or --all to stop all crew members. Should use same semantics as gt shutdown.


Witness cleanup leaves worktree behind

When witness processes POLECAT_DONE:
- Session is killed ✓
- Work is merged ✓
- Worktree is NOT removed ✗

Dementus example: session 'not running', but /Users/stevey/gt/gastown/polecats/dementus still exists.

Expected: gt polecat nuke equivalent - full cleanup including worktree deletion.


test-after-fix

test


Move disk 1: C → A

Move disk 1 from peg C to peg A. (Move 743/1023)


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Idle Town Principle

**The Deacon should be silent/invisible when the town is healthy and idle.**

- Skip HEALTH_CHECK nudges when no active work exists
- Sleep 60+ seconds between patrol cycles (longer when idle)
- Let the feed subscription wake agents on actual events
- The daemon (10-minute heartbeat) is the safety net for dead sessions

This prevents flooding idle agents with health checks every few seconds.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


gt spawn --issue should auto-attach mol-polecat-work

When spawning a polecat with --issue but no --molecule, the polecat gets an issue assigned and work assignment mail, but no molecule on their hook. They check 'gt mol status', see nothing, and are stuck.

Fix: If --issue is provided but --molecule is not, auto-attach mol-polecat-work (or a configurable default) to the polecat's hook.

Current behavior:
- Issue assigned in beads ✓
- Mail sent ✓
- No molecule attached ✗

Expected:
- Issue assigned in beads ✓
- Mail sent ✓
- mol-polecat-work attached to hook ✓


Polecat Arm (arm-toast)

Single polecat inspection and action cycle.

This molecule is bonded dynamically by mol-witness-patrol's survey-workers step.
Each polecat being monitored gets one arm that runs in parallel with other arms.

## Variables

| Variable | Required | Description |
|----------|----------|-------------|
| polecat_name | Yes | Name of the polecat to inspect |
| rig | Yes | Rig containing the polecat |

## Step: capture
Capture recent tmux output for toast.

```bash
tmux capture-pane -t gt-gastown-toast -p | tail -50
```

Record:
- Last activity timestamp (when was last tool call?)
- Visible errors or stack traces
- Completion indicators ("Done", "Finished", etc.)

## Step: assess
Categorize polecat state based on captured output.

States:
- **working**: Recent tool calls, active processing
- **idle**: At prompt, no recent activity
- **error**: Showing errors or stack traces
- **requesting_shutdown**: Sent LIFECYCLE/Shutdown mail
- **done**: Showing completion indicators

Calculate: minutes since last activity.
Needs: capture

## Step: load-history
Read nudge history for toast from patrol state.

```
nudge_count = state.nudges[toast].count
last_nudge_time = state.nudges[toast].timestamp
```

This data was loaded by the parent patrol's load-state step and passed
to the arm via the bonding context.
Needs: assess

## Step: decide
Apply the nudge matrix to determine action for toast.

| State | Idle Time | Nudge Count | Action |
|-------|-----------|-------------|--------|
| working | any | any | none |
| idle | <10min | any | none |
| idle | 10-15min | 0 | nudge-1 (gentle) |
| idle | 15-20min | 1 | nudge-2 (direct) |
| idle | 20+min | 2 | nudge-3 (final) |
| idle | any | 3 | escalate |
| error | any | any | assess-severity |
| requesting_shutdown | any | any | pre-kill-verify |
| done | any | any | pre-kill-verify |

Nudge text:
1. "How's progress? Need any help?"
2. "Please wrap up soon. What's blocking you?"
3. "Final check. Will escalate in 5 min if no response."

Record decision and rationale.
Needs: load-history

## Step: execute
Take the decided action for toast.

**nudge-N**:
```bash
tmux send-keys -t gt-gastown-toast "{{nudge_text}}" Enter
```

**pre-kill-verify**:
```bash
cd polecats/toast
git status                    # Must be clean
git log origin/main..HEAD     # Check for unpushed
bd show <assigned-issue>      # Verify closed/deferred
```
If clean: kill session, remove worktree, delete branch
If dirty: record failure, retry next cycle

**escalate**:
```bash
gt mail send mayor/ -s "Escalation: toast stuck" -m "..."
```

**none**: No action needed.

Record: action taken, result, updated nudge count.
Needs: decide

## Output

The arm completes with:
- action_taken: none | nudge-1 | nudge-2 | nudge-3 | killed | escalated
- result: success | failed | pending
- updated_state: New nudge count and timestamp for toast

This data feeds back to the parent patrol's aggregate step.
---
bonded_from: mol-polecat-arm
bonded_to: gt-5glf
bonded_ref: arm-toast
bonded_at: 2025-12-23T10:00:00Z


Build activity stream component

Bubbletea component showing scrollable activity stream for a selected worker. Shows mutation events with timestamps, symbols, and issue titles. Displayed when user expands/selects a worker.


Move disk 3: A → B

Move disk 3 from peg A to peg B. (Move 532/1023)


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Merge: morsov-mjwcd60m

branch: polecat/morsov-mjwcd60m
target: main
source_issue: morsov-mjwcd60m
rig: gastown
agent_bead: gt-gastown-polecat-morsov


Digest: mol-deacon-patrol

Patrol 4: 3 rigs healthy


Digest: mol-deacon-patrol @ 2025-12-24 19:28

Patrol 17


Update rig init to create refinery as worktree

Modify rig initialization to create refinery as a git worktree instead of a separate clone.

## Changes
- internal/rig/init.go or similar - change refinery setup
- Create worktree at <rig>/refinery/ with branch 'refinery'
- Remove clone logic for refinery
- Update any path assumptions

## Considerations
- Refinery worktree should track main (or its own branch?)
- May need to handle existing rigs (migration path)


mol-deacon-patrol


Backup check for zombie polecats

Defense-in-depth check for zombie polecats that Witness should have cleaned.

**Why this exists:**
The Witness is responsible for nuking polecats after they complete work (via POLECAT_DONE).
This step provides backup detection in case the Witness fails to clean up.

**Zombie criteria:**
- State: idle or done (no active work assigned)
- Session: not running (tmux session dead)
- No hooked work (nothing pending for this polecat)
- Last activity: older than 10 minutes

**Run the zombie scan:**
```bash
gt deacon zombie-scan --dry-run
```

**If zombies detected:**
1. Review the output to confirm they are truly abandoned
2. Run without --dry-run to nuke them:
   ```bash
   gt deacon zombie-scan
   ```
3. This will:
   - Nuke each zombie polecat
   - Notify the Mayor about Witness failure
   - Log the cleanup action

**If no zombies:**
No action needed - Witness is doing its job.

**Note:** This is a backup mechanism. If you frequently find zombies,
investigate why the Witness isn't cleaning up properly.


Digest: mol-deacon-patrol

Patrol 12


Move disk 1: C → A

Move disk 1 from peg C to peg A. (Move 377/1023)


gt mail mark/delete: Basic message operations

Add `gt mail mark` and `gt mail delete` commands.

### gt mail mark
```
gt mail mark <id> --read
gt mail mark <id> --unread
```
- Update message read status in inbox.jsonl

### gt mail delete
```
gt mail delete <id> [--force]
```
- Remove message from inbox
- Confirm unless --force

**Implementation:**
- Add to internal/cmd/mail.go
- Add MarkRead(), Delete() to internal/mail/mailbox.go
- Rewrite inbox.jsonl without deleted message


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 357/1023)


Move disk 1: C → A

Move disk 1 from peg C to peg A. (Move 515/1023)


Epic: Patrol parity - Witness and Refinery match Deacon sophistication

Bring Witness and Refinery patrols up to Deacon's level of sophistication.

## Deacon has
1. Defined patrol molecule with clear steps
2. Wisp-based execution (spawn, run, squash, loop)
3. Daemon monitoring with auto-nudge on naked state
4. Handoff bead attachment mechanism
5. Banners for observability
6. Context-aware loop-or-exit

## Children
- gt-h1n5: Witness patrol: Add banners and wisp-based execution
- gt-qz2l: Refinery patrol: Add banners and wisp-based execution
- gt-poxd: Create handoff beads for Witness and Refinery roles

## Success criteria
- Tailing a Witness or Refinery session shows clear banners
- Patrols spawn as wisps and squash to digests
- Each role has a handoff bead with attached_molecule
- Daemon monitors Witness/Refinery nakedness (stretch goal)


Support space-separated rig/polecat syntax in gt polecat commands

## Problem
`gt polecat remove beads obsidian` fails with:
```
Error: invalid address 'beads': invalid address format: expected 'rig/polecat', got 'beads'
```

Requires slash syntax: `gt polecat remove beads/obsidian`

## Proposal
Support both syntaxes for ergonomics:
```bash
gt polecat remove beads/obsidian    # address syntax (current)
gt polecat remove beads obsidian    # positional syntax (proposed)
```

## Implementation
In polecat subcommands that take rig/polecat addresses:
- If arg contains `/`, use as-is
- If two args without `/`, join with `/`
- Apply to: remove, status, sync, reset, done

```go
func normalizePolecatAddress(args []string) string {
    if len(args) == 1 && strings.Contains(args[0], "/") {
        return args[0]
    }
    if len(args) == 2 {
        return args[0] + "/" + args[1]
    }
    // error handling...
}
```

## Rationale
- Unambiguous context - polecat commands always take rig + name
- Matches positional arg patterns in docker, kubectl, etc.
- Reduces agent friction (natural first guess is space-separated)
- Slash syntax remains valid for consistency with mail addresses


Digest: mol-deacon-patrol

Patrol 151 complete


Digest: mol-deacon-patrol

Patrol 122: All agents healthy, no incidents


Digest: mol-deacon-patrol

Patrol 17: All healthy, 2 mayor handoffs observed


mol-polecat-arm formula

Define mol-polecat-arm.formula.yaml with steps: capture (gt peek worker), assess (analyze output for stalls/errors), intervene (gt nudge or escalate). This is the per-worker arm in Christmas Ornament pattern.


Digest: mol-deacon-patrol

Patrol 126: All healthy


Polecat Arm (arm-toast)

Single polecat inspection and action cycle.

This molecule is bonded dynamically by mol-witness-patrol's survey-workers step.
Each polecat being monitored gets one arm that runs in parallel with other arms.

## Variables

| Variable | Required | Description |
|----------|----------|-------------|
| polecat_name | Yes | Name of the polecat to inspect |
| rig | Yes | Rig containing the polecat |

## Step: capture
Capture recent tmux output for toast.

```bash
tmux capture-pane -t gt-gastown-toast -p | tail -50
```

Record:
- Last activity timestamp (when was last tool call?)
- Visible errors or stack traces
- Completion indicators ("Done", "Finished", etc.)

## Step: assess
Categorize polecat state based on captured output.

States:
- **working**: Recent tool calls, active processing
- **idle**: At prompt, no recent activity
- **error**: Showing errors or stack traces
- **requesting_shutdown**: Sent LIFECYCLE/Shutdown mail
- **done**: Showing completion indicators

Calculate: minutes since last activity.
Needs: capture

## Step: load-history
Read nudge history for toast from patrol state.

```
nudge_count = state.nudges[toast].count
last_nudge_time = state.nudges[toast].timestamp
```

This data was loaded by the parent patrol's load-state step and passed
to the arm via the bonding context.
Needs: assess

## Step: decide
Apply the nudge matrix to determine action for toast.

| State | Idle Time | Nudge Count | Action |
|-------|-----------|-------------|--------|
| working | any | any | none |
| idle | <10min | any | none |
| idle | 10-15min | 0 | nudge-1 (gentle) |
| idle | 15-20min | 1 | nudge-2 (direct) |
| idle | 20+min | 2 | nudge-3 (final) |
| idle | any | 3 | escalate |
| error | any | any | assess-severity |
| requesting_shutdown | any | any | pre-kill-verify |
| done | any | any | pre-kill-verify |

Nudge text:
1. "How's progress? Need any help?"
2. "Please wrap up soon. What's blocking you?"
3. "Final check. Will escalate in 5 min if no response."

Record decision and rationale.
Needs: load-history

## Step: execute
Take the decided action for toast.

**nudge-N**:
```bash
tmux send-keys -t gt-gastown-toast "{{nudge_text}}" Enter
```

**pre-kill-verify**:
```bash
cd polecats/toast
git status                    # Must be clean
git log origin/main..HEAD     # Check for unpushed
bd show <assigned-issue>      # Verify closed/deferred
```
If clean: kill session, remove worktree, delete branch
If dirty: record failure, retry next cycle

**escalate**:
```bash
gt mail send mayor/ -s "Escalation: toast stuck" -m "..."
```

**none**: No action needed.

Record: action taken, result, updated nudge count.
Needs: decide

## Output

The arm completes with:
- action_taken: none | nudge-1 | nudge-2 | nudge-3 | killed | escalated
- result: success | failed | pending
- updated_state: New nudge count and timestamp for toast

This data feeds back to the parent patrol's aggregate step.
---
bonded_from: mol-polecat-arm
bonded_to: gt-ie33
bonded_ref: arm-toast
bonded_at: 2025-12-23T10:00:00Z


Check Witness and Refinery health

Check Witness and Refinery health for each rig.

**ZFC Principle**: You (Claude) make the judgment call about what is "stuck" or "unresponsive" - there are no hardcoded thresholds in Go. Read the signals, consider context, and decide.

For each rig, run:
```bash
gt witness status <rig>
gt refinery status <rig>
```

**Signals to assess:**

| Component | Healthy Signals | Concerning Signals |
|-----------|-----------------|-------------------|
| Witness | State: running, recent activity | State: not running, no heartbeat |
| Refinery | State: running, queue processing | Queue stuck, merge failures |

**Tracking unresponsive cycles:**

Maintain in your patrol state (persisted across cycles):
```
health_state:
  <rig>:
    witness:
      unresponsive_cycles: 0
      last_seen_healthy: <timestamp>
    refinery:
      unresponsive_cycles: 0
      last_seen_healthy: <timestamp>
```

**Decision matrix** (you decide the thresholds based on context):

| Cycles Unresponsive | Suggested Action |
|---------------------|------------------|
| 1-2 | Note it, check again next cycle |
| 3-4 | Attempt restart: gt witness restart <rig> |
| 5+ | Escalate to Mayor with context |

**Restart commands:**
```bash
gt witness restart <rig>
gt refinery restart <rig>
```

**Escalation:**
```bash
gt mail send mayor/ -s "Health: <rig> <component> unresponsive" \
  -m "Component has been unresponsive for N cycles. Restart attempts failed.
      Last healthy: <timestamp>
      Error signals: <details>"
```

Reset unresponsive_cycles to 0 when component responds normally.


Digest: mol-deacon-patrol

Patrol 10: All healthy, no messages


Polecat template cleanup

Collection of improvements to the polecat role template (polecat.md.tmpl). Focus: reduce prose redundancy, move behavior into molecules, fix terminology, improve clarity.


gt-gastown-polecat-toecutter

gt-gastown-polecat-toecutter

role_type: polecat
rig: gastown
agent_state: spawning
hook_bead: gt-27bzi
role_bead: gt-polecat-role
cleanup_status: null
active_mr: gt-g7z75
notification_level: null


gt sling: nudge witness+refinery when dispatching to polecat

When gt sling dispatches work to a polecat, wake the rig's witness and refinery.

## Boot+Nudge Pattern

```go
// After successful polecat dispatch
func wakeRigAgents(rig string) {
    // Level 2: Start if asleep
    exec.Command("gt", "rig", "boot", rig).Run()

    // Level 1: Clear backoff if running
    t := tmux.NewTmux()
    t.NudgeSession(fmt.Sprintf("gt-%s-witness", rig), "wake")
    t.NudgeSession(fmt.Sprintf("gt-%s-refinery", rig), "wake")
}
```

## Graceful Behavior

- `gt rig boot` is idempotent (no-op if already running)
- Nudge failures are silent (session might not exist yet)
- Agents discover what happened by checking reality

## Reference

See ~/gt/docs/patrol-system-design.md (Two-Level Wake section)


Digest: mol-deacon-patrol

Patrol 64: Routine


Digest: mol-deacon-patrol

Patrol cycle 52: All healthy


Digest: mol-deacon-patrol

Patrol 16: All healthy


Work on gt-ogr: Fix rig count in tmux status bar. The cou...

Work on gt-ogr: Fix rig count in tmux status bar. The count is showing wrong. Run 'bd show gt-ogr' for details.


Digest: mol-deacon-patrol

Patrol 17: All agents healthy


bd ready --blockers: prioritize issues that block other work

bd ready should prioritize issues that are blocking other work.

**From VC**: Blocker-first prioritization in GetReadyWork(). ~100 lines.
Algorithm: baseline-failure first, then discovered:blocker, then by priority.

**Gas Town implementation**: CLI flag or default behavior:
```bash
bd ready --blockers-first  # Or make this default
```

Checks dependency graph. Issues with many dependents surface first.

**Value**: Unblocks parallelism faster. Critical path gets cleared.

**VC lesson**: Without blocker priority, work can starve on discovered issues.


Move disk 6: B → A

Move disk 6 from peg B to peg A. (Move 736/1023)


Digest: mol-deacon-patrol

Patrol 18: Quiet


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 235/1023)


Digest: mol-deacon-patrol

Patrol cycle 81: All healthy. 3 rigs, 6 agents pinged. No incidents.


MessagingConfig: Fix error message inconsistency in validation

Negative value errors don't wrap ErrMissingField while empty-list errors do. Should be consistent - either all wrap a sentinel or none do.


Deacon Patrol

Mayor's daemon patrol loop for handling callbacks, health checks, and cleanup.


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 891/1023)


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Digest: mol-deacon-patrol

Patrol 5: All clear


Move disk 1: C → A

Move disk 1 from peg C to peg A. (Move 923/1023)


Add nudge_channels to MessagingConfig schema

Extend MessagingConfig in internal/config/types.go.

ADD TO MessagingConfig STRUCT:
    // NudgeChannels are named groups for real-time nudge fan-out.
    // Like mailing lists but for tmux send-keys instead of durable mail.
    NudgeChannels map[string][]string `json:"nudge_channels,omitempty"`

UPDATE NewMessagingConfig():
    Add: NudgeChannels: make(map[string][]string)

UPDATE ValidateMessagingConfig() in loader.go:
    Validate that nudge channel names are non-empty
    Validate that each channel has at least one recipient

FILE: internal/config/types.go, internal/config/loader.go
TESTS: Add to loader_test.go following existing patterns

Example config:
{
  "nudge_channels": {
    "workers": ["gastown/polecats/*", "gastown/crew/*"],
    "witnesses": ["*/witness"]
  }
}


Merge: nux-mjvtlh4f

branch: polecat/nux-mjvtlh4f
target: main
source_issue: nux-mjvtlh4f
rig: gastown
agent_bead: gt-gastown-polecat-nux


Digest: mol-deacon-patrol

Patrol 3: all healthy, mayor running, witnesses running


Merge Queue in Beads: Universal chit system for all work

**Design doc**: docs/merge-queue-design.md


ensure-gastown-refinery

Start the gastown rig Refinery.

## Action
```bash
gt refinery start gastown
```

## Verify
1. Session exists: `tmux has-session -t gastown-refinery 2>/dev/null`
2. Not stalled: `gt peek gastown/refinery` does NOT show "> Try" prompt
3. Queue processing: Refinery can receive merge requests

## OnStall
```bash
gt nudge gastown/refinery "Start patrol."
sleep 30
# Re-verify
```

## OnFail
Log error. Completed polecat work will queue until Refinery recovers.


ZFC #4: Replace daemon identity parsing with agent self-registration

**ZFC Violation:** internal/daemon/lifecycle.go:209-309

The daemon has embedded switch statements that parse agent identity strings to determine:
- Session names
- Working directories
- Which agents need pre-sync
- Restart commands

**Current anti-pattern:**
```go
if strings.HasSuffix(identity, "-refinery") {
    needsPreSync = true
    workDir = filepath.Join(...)
}
```

**ZFC-compliant solution:**
Agent types self-register via role beads:
- Role bead contains: working_dir, session_name_pattern, needs_sync, restart_command
- Daemon reads role bead to get lifecycle config
- No identity string parsing in Go

**Depends on:** Day 1.5 (role beads exist)

Reference: ~/gt/docs/zfc-violations-audit.md #4


Polecat prompting: gt mq submit on completion

Update Polecat CLAUDE.md prompting to:

1. On task completion, run: gt mq submit --issue <id>
2. This creates a merge-request bead in the queue
3. Engineer will process it

The Polecat self-reports completion to the merge queue.


mol-deacon-patrol


Digest: mol-deacon-patrol

Patrol 6: all clear


Digest: mol-deacon-patrol

Patrol cycle 17: All 3 rigs healthy. No incidents.


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 247/1023)


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 457/1023)


Deacon stuck-session detection and force-kill protocol

Deacon detects and kills genuinely stuck/hung Claude Code sessions.

## The Problem

Claude Code sessions can get stuck:
- Infinite loop / hung tool call
- Crashed but tmux session still exists
- Unresponsive to nudges

`gt rig boot` is idempotent (won't kill) - it only starts if not running.
Someone needs to detect stuck sessions and force-kill them.

## Detection Protocol

During Deacon health rounds:

1. **Ping test**: `gt nudge <agent> 'HEALTH_CHECK'`
2. **Wait for response**: Agent should update agent bead `last_activity`
3. **Timeout**: If no activity update within N seconds, mark suspicious
4. **Consecutive failures**: After M consecutive failures, declare stuck

## Force-Kill Protocol

When stuck detected:

```bash
# 1. Log the intervention
gt mail send <agent> -s 'FORCE_KILL: unresponsive' -m 'Deacon detected...'

# 2. Kill the tmux session
tmux kill-session -t <session-name>

# 3. Update agent bead state
bd update <agent-bead> --status=killed --reason='Deacon force-kill: unresponsive'

# 4. Notify mayor (optional, for visibility)
gt mail send mayor/ -s 'Agent killed: <agent>' -m 'Reason: unresponsive...'
```

## Recovery

After force-kill, the agent is 'asleep'. Normal wake mechanisms apply:
- `gt rig boot` restarts it
- Or stays asleep until next activity trigger

## Parameters (configurable)

- ping_timeout: 30s (how long to wait for response)
- consecutive_failures: 3 (how many before force-kill)
- cooldown: 5m (minimum time between force-kills of same agent)

## NOT Deacon's Job

- Graceful shutdown (agent does this itself)
- Context-based recycling (agent self-handoffs)
- Normal backoff/sleep transitions

Deacon only force-kills when agent is genuinely unresponsive.


gt-polecat-gastown-rictus

gt-polecat-gastown-rictus

role_type: polecat
rig: gastown
agent_state: running
hook_bead: gt-dsqxw
role_bead: null


Move disk 2: B → A

Move disk 2 from peg B to peg A. (Move 142/1023)


Digest: mol-deacon-patrol

Patrol 1: All agents healthy, no lifecycle requests, no orphans remediated


Move disk 1: C → A

Move disk 1 from peg C to peg A. (Move 161/1023)


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Digest: mol-deacon-patrol

Patrol 19: Quiet


Digest: mol-deacon-patrol

Patrol 153 complete


Add pre-flight test check to mol-polecat-work

Add a step early in mol-polecat-work (after branch-setup, before implement) to check if tests pass on main.

## Problem
If main is broken when polecat starts, they could:
- Waste context trying to fix unrelated issues
- Not know if their changes broke things or it was pre-existing
- Get blamed for failures they didn't cause

## Proposed Step: preflight-tests

After branch-setup, before implement:

1. Checkout main temporarily
2. Run test suite
3. If tests PASS: Continue to implement
4. If tests FAIL:
   - Quick fix (<15 min): Fix it, commit to main, then continue
   - Big fix: File bead, mail Witness, proceed with own work
   - Use ZFC judgment - you're there, you decide

## Handoff Consideration
If fixing pre-existing failures consumes significant context:
- Commit the fix
- gt handoff with note: 'Fixed pre-existing test failures, continuing with assigned work'
- Fresh session picks up from implement step

## Key Principle
Scotty Test: Don't walk past a broken warp core. But also don't let someone else's mess derail your mission entirely.


Digest: mol-deacon-patrol

Patrol 2: 1 msg (Nux done), health OK


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 249/1023)


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 73/1023)


Digest: mol-deacon-patrol

Patrol #10: Stable


Template and Formula Distribution: Embed in binary, detect staleness

## Problem

Two types of Gas Town infrastructure live in `.beads/` but have unclear distribution:

1. **Role templates** (`*.md.tmpl`) - embedded in binary, rendered to CLAUDE.md on setup
2. **Patrol formulas** (`*.formula.json`) - currently just exist, no clear seeding path

When `gt` is rebuilt with updated templates/formulas, existing installations don't auto-update.

## Current State

- Templates: embedded via `//go:embed`, written on `gt install`/`gt rig init`
- Formulas: exist in `.beads/formulas/` but no seeding mechanism
- `bd init` creates empty structure (correct - bd shouldn't know Gas Town)
- No staleness detection for either

## Proposed Solution

### 1. Embed formulas in `gt` binary

```go
//go:embed formulas/*.formula.json
var formulaFS embed.FS
```

### 2. Seed formulas during setup

`gt install` and `gt rig init` write embedded formulas to `.beads/formulas/`.

### 3. Hash-based staleness detection

`gt doctor` checks:
- CLAUDE.md hash vs embedded template hash
- Formula files hash vs embedded formula hash

If stale → warn. `gt doctor --fix` refreshes.

### 4. Keep bd/gt boundary clean

- `bd` stays generic: `bd cook <path>` takes any formula path
- `gt` knows where formulas live, handles distribution
- Patrol formulas are Gas Town infrastructure, not beads concern

## Tasks

1. Move formulas to embedded FS in gt binary
2. Add formula seeding to `gt install` / `gt rig init`
3. Add hash storage for templates and formulas
4. Add staleness detection to `gt doctor`
5. Add `--fix` flag to refresh stale files


Digest: mol-deacon-patrol

Patrol #18


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 43/1023)


Check Witness and Refinery health

Check Witness and Refinery health for each rig.

**ZFC Principle**: You (Claude) make the judgment call about what is "stuck" or
"unresponsive" - there are no hardcoded thresholds in Go. Read the signals,
consider context, and decide.

For each rig, run:
```bash
gt witness status <rig>
gt refinery status <rig>
```

**Signals to assess:**

| Component | Healthy Signals | Concerning Signals |
|-----------|-----------------|-------------------|
| Witness | State: running, recent activity | State: not running, no heartbeat |
| Refinery | State: running, queue processing | Queue stuck, merge failures |

**Tracking unresponsive cycles:**

Maintain in your patrol state (persisted across cycles):
```
health_state:
  <rig>:
    witness:
      unresponsive_cycles: 0
      last_seen_healthy: <timestamp>
    refinery:
      unresponsive_cycles: 0
      last_seen_healthy: <timestamp>
```

**Decision matrix** (you decide the thresholds based on context):

| Cycles Unresponsive | Suggested Action |
|---------------------|------------------|
| 1-2 | Note it, check again next cycle |
| 3-4 | Attempt restart: gt witness restart <rig> |
| 5+ | Escalate to Mayor with context |

**Restart commands:**
```bash
gt witness restart <rig>
gt refinery restart <rig>
```

**Escalation:**
```bash
gt mail send mayor/ -s "Health: <rig> <component> unresponsive" \
  -m "Component has been unresponsive for N cycles. Restart attempts failed.
      Last healthy: <timestamp>
      Error signals: <details>"
```

Reset unresponsive_cycles to 0 when component responds normally.


Move disk 5: C → A

Move disk 5 from peg C to peg A. (Move 176/1023)


MessagingConfig: Add missing test cases

Missing test coverage:
1. Version > CurrentMessagingVersion rejection
2. Malformed JSON handling


Digest: mol-deacon-patrol

Cycle 8: quiet


Swarm learning: Spawn should auto-notify polecats

town spawn assigns issues but doesn't notify polecats. Required separate 'town session send' to inject prompts. This should be one atomic operation - spawn assigns AND pokes the polecat to start working.


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 475/1023)


Move disk 2: B → A

Move disk 2 from peg B to peg A. (Move 502/1023)


Digest: mol-deacon-patrol

Patrol 4: MQ cleared (0), all healthy


Extract SupportedShells constant to constants package

Extract repeated shell list to a single constant.

## Files to modify
- internal/constants/constants.go (add constant)
- internal/cmd/start.go (use constant at lines 729, 773, 907)
- internal/cmd/crew_helpers.go (use constant)

## Implementation
Add to constants.go:
```go
var SupportedShells = []string{"bash", "zsh", "sh", "fish", "tcsh", "ksh"}
```

Replace all inline []string{"bash", "zsh"...} with constants.SupportedShells.

## Acceptance criteria
- [ ] SupportedShells added to internal/constants/constants.go
- [ ] All 4 occurrences in start.go and crew_helpers.go replaced
- [ ] grep -r '"bash", "zsh"' returns no matches in internal/cmd/
- [ ] go build ./... passes
- [ ] go test ./... passes


Merge: morsov-1767106016839

branch: polecat/morsov-1767106016839
target: main
source_issue: morsov-1767106016839
rig: gastown


bd mol update: Check and update installed formulas

Check for and apply updates to installed formulas.

Usage: bd mol update [formula-name]

Should:
- Check GitHub for newer versions/commits
- Show available updates
- Apply updates when requested
- Track update history


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Idle Town Principle

**The Deacon should be silent/invisible when the town is healthy and idle.**

- Skip HEALTH_CHECK nudges when no active work exists
- Sleep 60+ seconds between patrol cycles (longer when idle)
- Let the feed subscription wake agents on actual events
- The daemon (10-minute heartbeat) is the safety net for dead sessions

This prevents flooding idle agents with health checks every few seconds.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Refinery agent: merge queue processing loop

The Refinery agent processes the merge queue, merging polecat work to main.

## Interface

```go
type Refinery struct {
    rig    *Rig
    queue  *MergeQueue
    git    *Git
    mail   *Mailbox
    config RefineryConfig
}

type RefineryConfig struct {
    AutoMerge     bool          // Auto-merge passing MRs
    RunTests      bool          // Run tests before merge
    TestCommand   string        // Command to run tests
    RequireReview bool          // Require review before merge (future)
}

func NewRefinery(rig *Rig, ...) *Refinery

// Lifecycle
func (r *Refinery) Start() error
func (r *Refinery) Stop() error
func (r *Refinery) IsRunning() bool

// Processing
func (r *Refinery) ProcessQueue() error
func (r *Refinery) ProcessMR(mr *MergeRequest) error
```

## Processing Loop

1. Check queue for pending MRs
2. For each pending MR:
   a. Fetch polecat branch
   b. Attempt merge to refinery/rig (local main)
   c. Run tests if configured
   d. If pass: push to origin, mark merged
   e. If fail: mark rejected, notify polecat
3. Sleep, repeat

## Merge Strategy

- Fast-forward when possible
- Merge commit when not
- On conflict: reject MR, polecat must rebase

## Test Integration

If tests configured:
```bash
cd refinery/rig
git merge polecat/branch
<test_command>  # e.g., go test ./...
```
Result determines merge/reject.

## Notifications

On merge success:
- Mail to polecat: "Your work merged"
- Update bead if issue tracked

On merge failure:
- Mail to polecat: "Merge failed: <reason>"
- Include conflict details if applicable

## Dependencies

Needs: Rig management, Git wrapper, Mail system, Merge queue


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 331/1023)


Add INSTALLING.md with full setup guide

README Quick Start is too brief. Create docs/INSTALLING.md with:
1. All prerequisites with install commands
2. Step-by-step install for macOS and Linux
3. Verification steps (gt doctor, gt status)
4. Troubleshooting common issues
5. Minimal mode vs full-stack mode setup


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 999/1023)


Remove origin push from polecat workflow

Polecats should no longer push their branches to origin.

## Changes
- internal/cmd/done.go - remove 'git push origin HEAD'
- internal/cmd/mq_submit.go - remove branch push
- Molecule templates - remove push instructions
- Any hooks that push polecat branches

## Verification
- Polecat completes work without pushing
- Branch stays local
- Refinery can still see the branch (via shared .git)


Verify architecture.md shows correct harness and rig structure

Review architecture.md diagrams:
- Verify town-level structure shows harness correctly
- Confirm rig-level mayor/rig/ is shown (it appears to be there at line 197)
- Check mermaid diagrams match ASCII diagrams
- Update if any inconsistencies found
- Cross-reference with new harness.md docs


Move disk 1: A → B

Move disk 1 from peg A to peg B. (Move 619/1023)


Add keyboard navigation and filtering

Keyboard navigation: j/k or arrows to move, enter to expand/collapse, q to quit. Filtering: by rig name, worker name, event type. Search within activity stream.


Digest: mol-deacon-patrol

Patrol 12: healthy


Digest: mol-deacon-patrol

P16: stable


Digest: mol-deacon-patrol

Patrol 17: clear


Move disk 4: B → A

Move disk 4 from peg B to peg A. (Move 232/1023)


Digest: mol-deacon-patrol

Patrol 12: All healthy


gt doctor: detect orphaned code on beads-sync branch

After merging beads-sync to main, some code changes can be lost if the merge conflict resolution drops files.

Add a doctor check that runs:
  git diff main..beads-sync -- '*.go' '*.md'

If there are differences in code files (not just .beads/), warn about potentially orphaned work.

Today's incident: Merge 96c773f lost mailbox.go and router.go changes from 5791752, requiring re-implementation.

Acceptance:
- gt doctor warns if beads-sync has unmerged code changes
- Excludes .beads/ directory (expected to differ)
- Shows file list of orphaned changes


mol-deacon-patrol

Mayor's daemon patrol loop.

The Deacon is the Mayor's background process that runs continuously, handling callbacks, monitoring rig health, and performing cleanup. Each patrol cycle runs these steps in sequence, then loops or exits.

## Second-Order Monitoring

Witnesses send WITNESS_PING messages to verify the Deacon is alive. This
prevents the "who watches the watchers" problem - if the Deacon dies,
Witnesses detect it and escalate to the Mayor.

The Deacon's agent bead last_activity timestamp is updated during each patrol
cycle. Witnesses check this timestamp to verify health.


Merge: capable-1767074974673

branch: polecat/capable-1767074974673
target: main
source_issue: capable-1767074974673
rig: gastown


Code review: gt sling --naked fix

Review the fix for gt sling --naked to bypass pane lookup for terminated polecats in internal/cmd/sling.go


Digest: mol-deacon-patrol

Patrol 84: All healthy


Move disk 1: B → C

Move disk 1 from peg B to peg C. (Move 3/1023)


Digest: mol-deacon-patrol

Patrol 206: All nominal


Merge: capable-mjxdb1vx

branch: polecat/capable-mjxdb1vx
target: main
source_issue: capable-mjxdb1vx
rig: gastown
agent_bead: gt-gastown-polecat-capable