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Key insight: Rig and Bond operate at different abstraction levels: - Rig = source-level composition (formula YAML with extends/compose) - Bond = artifact-level composition (protos, mols, wisps) This preserves the symmetric bond table while cleanly separating authoring (rig) from runtime composition (bond). New docs: - rig-cook-run.md: Canonical spec for the three phases Updated docs: - molecule-algebra.md: Three Phases section, rig/bond distinction - molecular-chemistry.md: Rig/bond clarification in bond section - vision.md: Core Innovation 3 now covers Rig/Cook/Run "This is a discovery, not an invention." 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>