Added comprehensive CLI reference documentation for the three molecule lifecycle commands: - bd mol bond: Instantiate proto into Mol (durable) or Wisp (ephemeral) - bd mol squash: Complete molecule and generate digest - bd mol burn: Abandon molecule without digest Includes argument tables, behavior descriptions, examples, and a lifecycle diagram showing the steam engine metaphor mapping. Closes: gt-odvf 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>