johno-square f97f3f6934 fix(doctor): add timeouts to git network operations to prevent hanging ...

The CloneDivergenceCheck was running `git fetch --quiet` without any
timeout, causing `gt doctor` to hang indefinitely when any git clone
had network issues, SSH key prompts, or credential dialogs.

Added timeouts to potentially blocking network operations:
- git fetch --quiet: 5 second timeout
- git pull --rebase: 30 second timeout

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2026-01-21 13:37:31 -08:00

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activity

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agent

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beads

fix(beads): multi-repo routing for custom types and role slots

2026-01-21 13:37:31 -08:00

boot

fix(tmux): use KillSessionWithProcesses to prevent zombie bash processes

2026-01-20 20:45:58 -08:00

checkpoint

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claude

fix: use gt prime --hook in session hooks

2026-01-21 13:36:21 -08:00

cmd

fix: verify .beads directory exists after bd init

2026-01-21 13:37:30 -08:00

config

fix: use exec env for startup command to fix WaitForCommand detection (#844)

2026-01-21 13:36:21 -08:00

connection

fix(tmux): use KillSessionWithProcesses to prevent zombie bash processes

2026-01-20 20:45:58 -08:00

constants

fix(session): increase ClaudeStartTimeout from 60s to 120s

2026-01-20 22:16:03 -08:00

convoy

feat(convoy): add redundant observers to Witness and Refinery

2026-01-20 20:48:02 -08:00

crew

fix(tmux): use KillSessionWithProcesses to prevent zombie bash processes

2026-01-20 20:45:58 -08:00

daemon

fix(tmux): use KillSessionWithProcesses to prevent zombie bash processes

2026-01-20 20:45:58 -08:00

deacon

fix(tmux): use KillSessionWithProcesses to prevent zombie bash processes

2026-01-20 20:45:58 -08:00

deps

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doctor

fix(doctor): add timeouts to git network operations to prevent hanging

2026-01-21 13:37:31 -08:00

dog

Fixing unit tests on windows (#813)

2026-01-20 14:17:35 -08:00

events

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feed

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formula

feat(formula): add verification legs and presets to code-review (#841)

2026-01-21 13:36:21 -08:00

git

fix: update patrol_check tests and add cross-filesystem clone support

2026-01-21 13:37:31 -08:00

keepalive

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lock

Fixing unit tests on windows (#813)

2026-01-20 14:17:35 -08:00

mail

Fixing unit tests on windows (#813)

2026-01-20 14:17:35 -08:00

mayor

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mq

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opencode

Fixing unit tests on windows (#813)

2026-01-20 14:17:35 -08:00

plugin

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polecat

fix(polecat): exclude reserved infrastructure agent names from allocator (#837)

2026-01-21 13:36:20 -08:00

protocol

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refinery

feat(convoy): add redundant observers to Witness and Refinery

2026-01-20 20:48:02 -08:00

rig

fix: ensure gitignore patterns on role creation

2026-01-20 20:25:12 -08:00

runtime

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session

fix(tmux): use KillSessionWithProcesses to prevent zombie bash processes

2026-01-20 20:45:58 -08:00

shell

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state

Fixing unit tests on windows (#813)

2026-01-20 14:17:35 -08:00

style

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suggest

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swarm

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templates

feat(mayor): add escalation check to startup protocol

2026-01-20 22:16:03 -08:00

tmux

Fix deacon patrol process leak by killing pane processes before respawn (#745)

2026-01-21 13:36:18 -08:00

townlog

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tui

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ui

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util

feat(orphans): add --aggressive flag for tmux-verified orphan detection

2026-01-20 20:43:31 -08:00

version

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web

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wisp

Fixing unit tests on windows (#813)

2026-01-20 14:17:35 -08:00

witness

fix(witness): run convoy check regardless of cleanup status

2026-01-21 13:36:20 -08:00

workspace

Fixing unit tests on windows (#813)

2026-01-20 14:17:35 -08:00

wrappers

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