bd daemon sync: 2026-01-11 15:33:11

.beads/.gitignore

@@ -1,39 +0,0 @@
-# SQLite databases
-*.db
-*.db?*
-*.db-journal
-*.db-wal
-*.db-shm
-
-# Daemon runtime files
-daemon.lock
-daemon.log
-daemon.pid
-bd.sock
-sync-state.json
-last-touched
-
-# Local version tracking (prevents upgrade notification spam after git ops)
-.local_version
-
-# Legacy database files
-db.sqlite
-bd.db
-
-# Worktree redirect file (contains relative path to main repo's .beads/)
-# Must not be committed as paths would be wrong in other clones
-redirect
-
-# Merge artifacts (temporary files from 3-way merge)
-beads.base.jsonl
-beads.base.meta.json
-beads.left.jsonl
-beads.left.meta.json
-beads.right.jsonl
-beads.right.meta.json
-
-# NOTE: Do NOT add negation patterns (e.g., !issues.jsonl) here.
-# They would override fork protection in .git/info/exclude, allowing
-# contributors to accidentally commit upstream issue databases.
-# The JSONL files (issues.jsonl, interactions.jsonl) and config files
-# are tracked by git by default since no pattern above ignores them.

.beads/README.md

@@ -1,81 +0,0 @@
-# Beads - AI-Native Issue Tracking
-
-Welcome to Beads! This repository uses **Beads** for issue tracking - a modern, AI-native tool designed to live directly in your codebase alongside your code.
-
-## What is Beads?
-
-Beads is issue tracking that lives in your repo, making it perfect for AI coding agents and developers who want their issues close to their code. No web UI required - everything works through the CLI and integrates seamlessly with git.
-
-**Learn more:** [github.com/steveyegge/beads](https://github.com/steveyegge/beads)
-
-## Quick Start
-
-### Essential Commands
-
-```bash
-# Create new issues
-bd create "Add user authentication"
-
-# View all issues
-bd list
-
-# View issue details
-bd show <issue-id>
-
-# Update issue status
-bd update <issue-id> --status in_progress
-bd update <issue-id> --status done
-
-# Sync with git remote
-bd sync
-```
-
-### Working with Issues
-
-Issues in Beads are:
-- **Git-native**: Stored in `.beads/issues.jsonl` and synced like code
-- **AI-friendly**: CLI-first design works perfectly with AI coding agents
-- **Branch-aware**: Issues can follow your branch workflow
-- **Always in sync**: Auto-syncs with your commits
-
-## Why Beads?
-
-✨ **AI-Native Design**
-- Built specifically for AI-assisted development workflows
-- CLI-first interface works seamlessly with AI coding agents
-- No context switching to web UIs
-
-🚀 **Developer Focused**
-- Issues live in your repo, right next to your code
-- Works offline, syncs when you push
-- Fast, lightweight, and stays out of your way
-
-🔧 **Git Integration**
-- Automatic sync with git commits
-- Branch-aware issue tracking
-- Intelligent JSONL merge resolution
-
-## Get Started with Beads
-
-Try Beads in your own projects:
-
-```bash
-# Install Beads
-curl -sSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash
-
-# Initialize in your repo
-bd init
-
-# Create your first issue
-bd create "Try out Beads"
-```
-
-## Learn More
-
-- **Documentation**: [github.com/steveyegge/beads/docs](https://github.com/steveyegge/beads/tree/main/docs)
-- **Quick Start Guide**: Run `bd quickstart`
-- **Examples**: [github.com/steveyegge/beads/examples](https://github.com/steveyegge/beads/tree/main/examples)
-
----
-
-*Beads: Issue tracking that moves at the speed of thought* ⚡

.beads/config.yaml

@@ -1,62 +0,0 @@
-# Beads Configuration File
-# This file configures default behavior for all bd commands in this repository
-# All settings can also be set via environment variables (BD_* prefix)
-# or overridden with command-line flags
-
-# Issue prefix for this repository (used by bd init)
-# If not set, bd init will auto-detect from directory name
-# Example: issue-prefix: "myproject" creates issues like "myproject-1", "myproject-2", etc.
-# issue-prefix: ""
-
-# Use no-db mode: load from JSONL, no SQLite, write back after each command
-# When true, bd will use .beads/issues.jsonl as the source of truth
-# instead of SQLite database
-# no-db: false
-
-# Disable daemon for RPC communication (forces direct database access)
-# no-daemon: false
-
-# Disable auto-flush of database to JSONL after mutations
-# no-auto-flush: false
-
-# Disable auto-import from JSONL when it's newer than database
-# no-auto-import: false
-
-# Enable JSON output by default
-# json: false
-
-# Default actor for audit trails (overridden by BD_ACTOR or --actor)
-# actor: ""
-
-# Path to database (overridden by BEADS_DB or --db)
-# db: ""
-
-# Auto-start daemon if not running (can also use BEADS_AUTO_START_DAEMON)
-# auto-start-daemon: true
-
-# Debounce interval for auto-flush (can also use BEADS_FLUSH_DEBOUNCE)
-# flush-debounce: "5s"
-
-# Git branch for beads commits (bd sync will commit to this branch)
-# IMPORTANT: Set this for team projects so all clones use the same sync branch.
-# This setting persists across clones (unlike database config which is gitignored).
-# Can also use BEADS_SYNC_BRANCH env var for local override.
-# If not set, bd sync will require you to run 'bd config set sync.branch <branch>'.
-sync-branch: "beads-sync"
-
-# Multi-repo configuration (experimental - bd-307)
-# Allows hydrating from multiple repositories and routing writes to the correct JSONL
-# repos:
-#   primary: "."  # Primary repo (where this database lives)
-#   additional:   # Additional repos to hydrate from (read-only)
-#     - ~/beads-planning  # Personal planning repo
-#     - ~/work-planning   # Work planning repo
-
-# Integration settings (access with 'bd config get/set')
-# These are stored in the database, not in this file:
-# - jira.url
-# - jira.project
-# - linear.url
-# - linear.api-key
-# - github.org
-# - github.repo

.beads/metadata.json

@@ -1,4 +1,4 @@
 {
   "database": "beads.db",
-  "jsonl_export": "sync_base.jsonl"
+  "jsonl_export": "issues.jsonl"
 }

.gitattributes

@@ -1,3 +0,0 @@
-
-# Use bd merge for beads JSONL files
-.beads/issues.jsonl merge=beads

home/home-server.nix

@@ -1,24 +0,0 @@
-{ pkgs, globalInputs, system, ... }:
-
-{
-  # Home Manager configuration for servers (minimal with development tools)
-  home.username = "johno";
-  home.homeDirectory = "/home/johno";
-  home.stateVersion = "24.05";
-
-  # Minimal roles for server with development capability
-  home.roles = {
-    base.enable = true;
-    development.enable = true;
-    tmux.enable = true;
-  };
-
-  targets.genericLinux.enable = true;
-  home.sessionVariables = {};
-  home.sessionPath = [];
-
-  imports = [
-    ./roles
-    ./roles/base-linux
-  ];
-}

home/roles/development/default.nix

@@ -85,20 +85,11 @@ in
         fi
       done
 
-      # Copy local skills from this repo
-      for file in ${./skills}/*.md; do
-        if [ -f "$file" ]; then
-          filename=$(basename "$file" .md)
-          dest="$HOME/.claude/commands/''${filename}.md"
-          cp "$file" "$dest"
-        fi
-      done
-
       $DRY_RUN_CMD echo "Claude Code humanlayer commands and agents installed successfully${
         if cfg.allowArbitraryClaudeCodeModelSelection
         then " (model specifications preserved)"
         else " (model selection removed)"
-      } + local skills"
+      }"
     '';
 
     # Set up beads Claude Code integration (hooks for SessionStart/PreCompact)

home/roles/development/skills/parallel_beads.md

@@ -1,198 +0,0 @@
----
-description: Orchestrate parallel bead processing with worktrees, PRs, and reviews
----
-
-# Parallel Beads Workflow
-
-This skill orchestrates parallel bead processing using subagents. Each bead gets its own worktree, implementation, PR, and review.
-
-## Phase 1: Selection
-
-1. **Get ready beads**: Run `bd ready` to list all beads with no blockers
-2. **Present selection**: Use `AskUserQuestion` with `multiSelect: true` to let the user choose which beads to work on
-   - Include bead ID and title for each option
-   - Allow selection of multiple beads
-
-Example:
-```
-AskUserQuestion with:
-- question: "Which beads do you want to work on in parallel?"
-- multiSelect: true
-- options from bd ready output
-```
-
-## Phase 2: Parallel Implementation
-
-For each selected bead, launch a subagent using the Task tool. All subagents should be launched in parallel (single message with multiple Task tool calls).
-
-### Subagent Instructions Template
-
-Each implementation subagent should receive these instructions:
-
-```
-Work on bead [BEAD_ID]: [BEAD_TITLE]
-
-1. **Create worktree**:
-   - Branch name: `bead/[BEAD_ID]`
-   - Worktree path: `~/wt/[REPO_NAME]/[BEAD_ID]`
-   - Command: `git worktree add -b bead/[BEAD_ID] ~/wt/[REPO_NAME]/[BEAD_ID]`
-
-2. **Review the bead requirements**:
-   - Run `bd show [BEAD_ID]` to understand the acceptance criteria
-   - Note any external issue references (GitHub issues, Linear tickets, etc.)
-
-3. **Implement the changes**:
-   - Work in the worktree directory
-   - Complete all acceptance criteria listed in the bead
-   - Run any relevant tests or checks
-
-4. **Commit and push**:
-   - Stage all changes: `git add -A`
-   - Create a descriptive commit message
-   - Push the branch: `git push -u origin bead/[BEAD_ID]`
-
-5. **Create a PR**:
-   - Detect hosting provider from origin URL: `git remote get-url origin`
-   - If URL contains `github.com`, use `gh`; otherwise use `tea` (Gitea/Forgejo)
-   - PR title: "[BEAD_ID] [BEAD_TITLE]"
-   - PR body must include:
-     - Reference to bead ID: "Implements bead: [BEAD_ID]"
-     - Any external issue references from the bead (e.g., "Closes #123")
-     - Summary of changes
-   - For GitHub (`gh`):
-     ```bash
-     gh pr create --title "[BEAD_ID] [BEAD_TITLE]" --body "$(cat <<'EOF'
-     ## Summary
-     [Brief description of changes]
-
-     ## Bead Reference
-     Implements bead: [BEAD_ID]
-
-     ## External Issues
-     [Any linked issues from the bead]
-
-     ## Changes
-     - [List of changes made]
-     EOF
-     )"
-     ```
-   - For Gitea (`tea`):
-     ```bash
-     tea pr create --head bead/[BEAD_ID] --base main \
-       --title "[BEAD_ID] [BEAD_TITLE]" \
-       --description "## Summary
-     [Brief description of changes]
-
-     ## Bead Reference
-     Implements bead: [BEAD_ID]
-
-     ## External Issues
-     [Any linked issues from the bead]
-
-     ## Changes
-     - [List of changes made]"
-     ```
-
-6. **Report results**:
-   - Return: PR URL, bead ID, success/failure status
-   - If blocked or unable to complete, explain what's blocking progress
-```
-
-### Launching Subagents
-
-Use `subagent_type: "general-purpose"` for implementation subagents. Launch all selected beads' subagents in a single message for parallel execution:
-
-```
-<Task calls for each selected bead - all in one message>
-```
-
-Collect results from all subagents before proceeding.
-
-## Phase 3: Parallel Review
-
-After all implementation subagents complete, launch review subagents for each PR.
-
-### Review Subagent Instructions Template
-
-```
-Review PR for bead [BEAD_ID]
-
-1. **Detect hosting provider**: Run `git remote get-url origin` - if it contains `github.com` use `gh`, otherwise use `tea`
-
-2. **Read the PR**:
-   - For GitHub: `gh pr view [PR_NUMBER] --json title,body,additions,deletions,files`
-   - For Gitea: `tea pr view [PR_NUMBER]`
-   - View the diff: `git diff main...bead/[BEAD_ID]`
-
-3. **Review against acceptance criteria**:
-   - Run `bd show [BEAD_ID]` to get the acceptance criteria
-   - Verify each criterion is addressed
-
-4. **Leave review comments**:
-   - For GitHub: `gh pr review [PR_NUMBER] --comment --body "[COMMENTS]"`
-   - For Gitea: `tea pr review [PR_NUMBER] --comment "[COMMENTS]"`
-   - Include:
-     - Acceptance criteria checklist (which are met, which might be missing)
-     - Code quality observations
-     - Suggestions for improvement
-
-5. **Return summary**:
-   - Overall assessment (ready to merge / needs changes)
-   - Key findings
-```
-
-Launch all review subagents in parallel.
-
-## Phase 4: Cleanup and Summary
-
-After reviews complete:
-
-1. **Clean up worktrees**:
-   ```bash
-   git worktree remove ~/wt/[REPO_NAME]/[BEAD_ID] --force
-   ```
-   Do this for each bead's worktree.
-
-2. **Provide final summary**:
-   Present a table or list with:
-   - Bead ID
-   - PR URL
-   - Status (success / failed / blocked)
-   - Review summary
-   - Any failures or blockers encountered
-
-Example output:
-```
-## Parallel Beads Summary
-
-| Bead | PR | Status | Review |
-|------|-----|--------|--------|
-| beads-abc | #123 | Success | Approved |
-| beads-xyz | #124 | Success | Needs changes |
-| beads-123 | - | Failed | Blocked by missing dependency |
-
-### Failures/Blockers
-- beads-123: Could not complete because [reason]
-
-### Next Steps
-- Review PRs that need changes
-- Address blockers for failed beads
-```
-
-## Error Handling
-
-- **Subagent failures**: If a subagent fails or times out, note it in the summary but continue with other beads
-- **PR creation failures**: Report the error but continue with reviews of successful PRs
-- **Worktree conflicts**: If a worktree already exists, ask the user if they want to remove it or skip that bead
-
-## Resource Limits
-
-- Consider limiting concurrent subagents to 3-5 to avoid overwhelming system resources
-- If user selects more beads than the limit, process them in batches
-
-## Notes
-
-- This workflow integrates with the beads system (`bd` commands)
-- Worktrees are created in `~/wt/[REPO_NAME]/` by convention
-- Each bead gets its own isolated branch and worktree
-- PRs automatically reference the bead ID for traceability

machines/john-endesktop/MIGRATION_PLAN.md

@@ -170,7 +170,6 @@ This document outlines the plan to migrate the john-endesktop server from Arch L
    ```bash
    blkid /dev/nvme0n1p5
    # Note the UUID for updating hardware-configuration.nix
-/dev/nvme0n1p5: LABEL="nixos" UUID="5f4ad025-bfab-4aed-a933-6638348059e5" UUID_SUB="4734d820-7b8a-4b7f-853a-026021c1d204" BLOCK_SIZE="4096" TYPE="btrfs" PARTLABEL="data" PARTUUID="9ea025df-cdb7-48fd-b5d4-37cd5d8588eb"
    ```
 
 8. **Copy your NixOS configuration to the server**
@@ -389,11 +388,11 @@ After successful migration and 24-48 hours of stable operation:
 
 Pre-migration:
 - [x] nvme0n1p5 removal from media pool complete
-- [x] Recent backup verified (< 24 hours)
+- [ ] Recent backup verified (< 24 hours)
-- [x] Maintenance window scheduled
+- [ ] Maintenance window scheduled
-- [x] NixOS ISO downloaded
+- [ ] NixOS ISO downloaded
-- [x] Bootable USB created
+- [ ] Bootable USB created
-- [x] NixOS config builds successfully
+- [ ] NixOS config builds successfully
 
 During migration:
 - [ ] ZFS pools exported

machines/john-endesktop/hardware-configuration.nix

@@ -18,29 +18,12 @@
   # File systems - these will need to be updated after installation
   # The nvme0n1p5 partition will be formatted as btrfs for NixOS root
   fileSystems."/" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
+    # Update this device path after installation
+    device = "/dev/disk/by-uuid/CHANGE-THIS-TO-YOUR-UUID";
     fsType = "btrfs";
     options = [ "subvol=@" "compress=zstd" "noatime" ];
   };
 
-  fileSystems."/home" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@home" "compress=zstd" "noatime" ];
-  };
-
-  fileSystems."/nix" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@nix" "compress=zstd" "noatime" ];
-  };
-
-  fileSystems."/var/log" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@log" "compress=zstd" "noatime" ];
-  };
-
   fileSystems."/boot" = {
     # This should match your current EFI partition
     device = "/dev/disk/by-uuid/F5C6-D570";
@@ -52,8 +35,10 @@
   # The pools should be imported automatically via boot.zfs.extraPools
   # /media and /swarmvols will be mounted by ZFS
 
-  # No swap needed - 23GB RAM is sufficient for this NFS/ZFS server
+  # Swap - using ZFS zvol
-  swapDevices = [ ];
+  swapDevices = [
+    { device = "/dev/zvol/media/swap"; }
+  ];
 
   # CPU microcode
   hardware.cpu.intel.updateMicrocode = lib.mkDefault config.hardware.enableRedistributableFirmware;