Remove wixos (WSL) configuration

WSL is no longer used. This removes:
- machines/wixos/ directory and configuration.nix
- nixos-wsl input from flake.nix
- nixosConfigurations.wixos output
- References to wixos in AGENTS.md and .goosehints

Implements bead: nixos-configs-2mk

.gitignore

@@ -1,2 +1,3 @@
 result
 thoughts
+.beads

.goosehints

@@ -9,7 +9,7 @@ Directory Structure:
 ----------------------
 • packages/      - Custom Nix packages leveraged across various configurations.
 • roles/         - Role-based configurations (e.g., kodi, bluetooth) each with its own module (default.nix) for inclusion in machine setups.
-• machines/      - Machine-specific configurations (e.g., nix-book, z790prors, boxy, wixos) including configuration.nix and hardware-configuration.nix tailored for each hardware.
+• machines/      - Machine-specific configurations (e.g., nix-book, zix790prors, boxy) including configuration.nix and hardware-configuration.nix tailored for each hardware.
 • home/          - Home-manager configurations for personal environments and application settings (e.g., home-nix-book.nix, home-z790prors.nix).
 
 Design Principles:

AGENTS.md

@@ -10,7 +10,7 @@ This is a NixOS configuration repository using flakes, managing multiple machine
 
 ### Flake Structure
 - **flake.nix**: Main entry point defining inputs (nixpkgs, home-manager, plasma-manager, etc.) and outputs for multiple NixOS configurations
-- **Machines**: `nix-book`, `boxy`, `wixos` (WSL configuration), `zix790prors`, `live-usb`, `johno-macbookpro` (Darwin/macOS)
+- **Machines**: `nix-book`, `boxy`, `zix790prors`, `live-usb`, `johno-macbookpro` (Darwin/macOS)
 - **Home configurations**: Standalone home-manager configuration for user `johno`
 
 ### Directory Structure
@@ -74,7 +74,6 @@ The repository also uses a modular home-manager role system for user-space confi
 - **nix-book**: Compact laptop → excludes office/media roles due to SSD space constraints
 - **boxy**: Living room media center → optimized for media consumption, excludes sync/office (shared machine)
 - **zix790prors**: All-purpose workstation → full desktop experience with all roles enabled
-- **wixos**: WSL2 development → full desktop experience, inherits from zix790prors Windows host
 - **live-usb**: Temporary environment → only base + desktop roles, no persistent services
 - **johno-macbookpro**: macOS work laptop → Darwin-specific configuration with development tools
 
@@ -107,7 +106,6 @@ darwin-rebuild build --flake .#johno-macbookpro
 - `nix-book`: Compact laptop with storage constraints, uses `home/home-laptop-compact.nix`
 - `boxy`: Shared living room media center/gaming desktop with AMD GPU, uses `home/home-media-center.nix`
 - `zix790prors`: Powerful all-purpose workstation (gaming, 3D modeling, development), dual-boots Windows 11 with shared btrfs /games partition, uses `home/home-desktop.nix`
-- `wixos`: WSL2 development environment running in Windows partition of zix790prors, uses `home/home-desktop.nix`
 - `live-usb`: Bootable ISO configuration, uses `home/home-live-usb.nix`
 - `johno-macbookpro`: macOS work laptop, uses `home/home-darwin-work.nix`
 

flake.lock

@@ -21,19 +21,42 @@
         "type": "github"
       }
     },
-    "flake-compat": {
+    "doomemacs": {
       "flake": false,
       "locked": {
-        "lastModified": 1765121682,
-        "narHash": "sha256-4VBOP18BFeiPkyhy9o4ssBNQEvfvv1kXkasAYd0+rrA=",
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "rev": "65f23138d8d09a92e30f1e5c87611b23ef451bf3",
+        "lastModified": 1767773143,
+        "narHash": "sha256-QL/t9v2kFNxBDyNJb/s411o3mxujan+QX5IZglTdpTk=",
+        "owner": "doomemacs",
+        "repo": "doomemacs",
+        "rev": "3e15fb36d7f94f0a218bda977be4d3f5da983a71",
         "type": "github"
       },
       "original": {
-        "owner": "edolstra",
-        "repo": "flake-compat",
+        "owner": "doomemacs",
+        "repo": "doomemacs",
+        "type": "github"
+      }
+    },
+    "emacs-overlay": {
+      "inputs": {
+        "nixpkgs": [
+          "nix-doom-emacs-unstraightened"
+        ],
+        "nixpkgs-stable": [
+          "nix-doom-emacs-unstraightened"
+        ]
+      },
+      "locked": {
+        "lastModified": 1768011937,
+        "narHash": "sha256-SnU2XTo34vwVaijs+4VwcXTNwMWO4nwzzs08N39UagA=",
+        "owner": "nix-community",
+        "repo": "emacs-overlay",
+        "rev": "79abf71d9897cf3b5189f7175cda1b1102abc65c",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-community",
+        "repo": "emacs-overlay",
         "type": "github"
       }
     },
@@ -159,6 +182,27 @@
         "type": "github"
       }
     },
+    "nix-doom-emacs-unstraightened": {
+      "inputs": {
+        "doomemacs": "doomemacs",
+        "emacs-overlay": "emacs-overlay",
+        "nixpkgs": [],
+        "systems": "systems_2"
+      },
+      "locked": {
+        "lastModified": 1768034604,
+        "narHash": "sha256-62pIZMvGHhYJmMiiBsxHqZt/dFyENPcFHlJq5NJF3Sw=",
+        "owner": "marienz",
+        "repo": "nix-doom-emacs-unstraightened",
+        "rev": "9b3b8044fe4ccdcbb2d6f733d7dbe4d5feea18bc",
+        "type": "github"
+      },
+      "original": {
+        "owner": "marienz",
+        "repo": "nix-doom-emacs-unstraightened",
+        "type": "github"
+      }
+    },
     "nix-github-actions": {
       "inputs": {
         "nixpkgs": [
@@ -181,38 +225,18 @@
         "type": "github"
       }
     },
-    "nixos-wsl": {
-      "inputs": {
-        "flake-compat": "flake-compat",
-        "nixpkgs": "nixpkgs"
-      },
-      "locked": {
-        "lastModified": 1765841014,
-        "narHash": "sha256-55V0AJ36V5Egh4kMhWtDh117eE3GOjwq5LhwxDn9eHg=",
-        "owner": "nix-community",
-        "repo": "NixOS-WSL",
-        "rev": "be4af8042e7a61fa12fda58fe9a3b3babdefe17b",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nix-community",
-        "ref": "main",
-        "repo": "NixOS-WSL",
-        "type": "github"
-      }
-    },
     "nixpkgs": {
       "locked": {
-        "lastModified": 1765472234,
-        "narHash": "sha256-9VvC20PJPsleGMewwcWYKGzDIyjckEz8uWmT0vCDYK0=",
-        "owner": "NixOS",
+        "lastModified": 1767480499,
+        "narHash": "sha256-8IQQUorUGiSmFaPnLSo2+T+rjHtiNWc+OAzeHck7N48=",
+        "owner": "nixos",
         "repo": "nixpkgs",
-        "rev": "2fbfb1d73d239d2402a8fe03963e37aab15abe8b",
+        "rev": "30a3c519afcf3f99e2c6df3b359aec5692054d92",
         "type": "github"
       },
       "original": {
-        "owner": "NixOS",
-        "ref": "nixos-unstable",
+        "owner": "nixos",
+        "ref": "nixos-25.11",
         "repo": "nixpkgs",
         "type": "github"
       }
@@ -233,22 +257,6 @@
         "type": "github"
       }
     },
-    "nixpkgs_2": {
-      "locked": {
-        "lastModified": 1767480499,
-        "narHash": "sha256-8IQQUorUGiSmFaPnLSo2+T+rjHtiNWc+OAzeHck7N48=",
-        "owner": "nixos",
-        "repo": "nixpkgs",
-        "rev": "30a3c519afcf3f99e2c6df3b359aec5692054d92",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nixos",
-        "ref": "nixos-25.11",
-        "repo": "nixpkgs",
-        "type": "github"
-      }
-    },
     "plasma-manager": {
       "inputs": {
         "home-manager": [
@@ -303,8 +311,8 @@
         "home-manager-unstable": "home-manager-unstable",
         "jovian": "jovian",
         "nix-darwin": "nix-darwin",
-        "nixos-wsl": "nixos-wsl",
-        "nixpkgs": "nixpkgs_2",
+        "nix-doom-emacs-unstraightened": "nix-doom-emacs-unstraightened",
+        "nixpkgs": "nixpkgs",
         "nixpkgs-unstable": "nixpkgs-unstable",
         "plasma-manager": "plasma-manager",
         "plasma-manager-unstable": "plasma-manager-unstable"
@@ -324,6 +332,21 @@
         "repo": "default",
         "type": "github"
       }
+    },
+    "systems_2": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-systems",
+        "repo": "default",
+        "type": "github"
+      }
     }
   },
   "root": "root",

flake.nix

@@ -4,8 +4,7 @@
   inputs = {
     nixpkgs.url = "github:nixos/nixpkgs/nixos-25.11";
     nixpkgs-unstable.url = "github:nixos/nixpkgs/nixos-unstable";
-    nixos-wsl.url = "github:nix-community/NixOS-WSL/main";
-    
+
     nix-darwin = {
       url = "github:nix-darwin/nix-darwin/nix-darwin-25.11";
       inputs.nixpkgs.follows = "nixpkgs";
@@ -47,9 +46,15 @@
       url = "github:steveyegge/beads";
       inputs.nixpkgs.follows = "nixpkgs-unstable";
     };
+
+    nix-doom-emacs-unstraightened = {
+      url = "github:marienz/nix-doom-emacs-unstraightened";
+      # Don't follow nixpkgs to avoid rebuild issues with emacs-overlay
+      inputs.nixpkgs.follows = "";
+    };
   };
 
-  outputs = { self, nixpkgs, nixpkgs-unstable, nixos-wsl, ... } @ inputs: let
+  outputs = { self, nixpkgs, nixpkgs-unstable, ... } @ inputs: let
     nixosModules = [
       ./roles
     ] ++ [
@@ -70,6 +75,7 @@
         home-manager.useUserPackages = true;
         home-manager.sharedModules = [
           inputs.plasma-manager.homeModules.plasma-manager
+          inputs.nix-doom-emacs-unstraightened.homeModule
         ];
         home-manager.extraSpecialArgs = {
           globalInputs = inputs;
@@ -98,6 +104,7 @@
         home-manager.useUserPackages = true;
         home-manager.sharedModules = [
           inputs.plasma-manager-unstable.homeModules.plasma-manager
+          inputs.nix-doom-emacs-unstraightened.homeModule
         ];
         home-manager.extraSpecialArgs = {
           globalInputs = inputs;
@@ -129,6 +136,9 @@
         ];
         home-manager.useGlobalPkgs = true;
         home-manager.useUserPackages = true;
+        home-manager.sharedModules = [
+          inputs.nix-doom-emacs-unstraightened.homeModule
+        ];
         home-manager.extraSpecialArgs = {
           globalInputs = inputs;
         };
@@ -165,19 +175,6 @@
       ];
     };
 
-    nixosConfigurations.wixos = nixpkgs.lib.nixosSystem rec {
-      system = "x86_64-linux";
-      modules = nixosModules ++ [
-        nixos-wsl.nixosModules.default
-        ./machines/wixos/configuration.nix
-        inputs.home-manager.nixosModules.home-manager
-        {
-          home-manager.users.johno = import ./home/home-desktop.nix;
-          home-manager.extraSpecialArgs = { inherit system; };
-        }
-      ];
-    };
-
     nixosConfigurations.zix790prors = nixpkgs.lib.nixosSystem rec {
       system = "x86_64-linux";
       modules = nixosModules ++ [

home/home-live-usb.nix

@@ -14,7 +14,12 @@
     desktop.enable = true;
     tmux.enable = true;
     plasma-manager.enable = true;
-    emacs.enable = true;
+    emacs = {
+      enable = true;
+      # Use pre-built Doom Emacs - all packages built at nix build time
+      # This means no doom sync is needed after booting the live USB
+      prebuiltDoom = true;
+    };
     i3_sway.enable = true;
     starship.enable = true;
     # development.enable = false;  # Not needed for live USB

home/roles/development/skills/reconcile_beads.md

@@ -23,9 +23,11 @@ bd list --status=in_review
 
 1. **Get the PR URL from bead notes**:
    ```bash
-   bd show [BEAD_ID] --json | jq -r '.notes'
+   bd show [BEAD_ID] --json | jq -r '.[0].notes'
    ```
-   Extract the PR URL (look for lines starting with "PR:" or containing pull request URLs)
+   Note: `bd show --json` returns an array, so use `.[0]` to access the first element.
+   Extract the PR URL (look for lines starting with "PR:" or containing pull request URLs).
+   Extract the PR number: `echo "$NOTES" | grep -oP '/pulls/\K\d+'`
 
 2. **Detect hosting provider**:
    - Run `git remote get-url origin`
@@ -38,9 +40,10 @@ bd list --status=in_review
      ```
    - For Gitea:
      ```bash
-     tea pr view [PR_NUMBER]
+     tea pr list --state=closed
      ```
-     Look for "State: merged" or "State: closed"
+     Look for the PR number in the INDEX column with STATE "merged".
+     Note: `tea pr view [PR_NUMBER]` lists all PRs, not a specific one. Use `tea pr list --state=closed` and look for your PR number in the results.
 
 ### Step 3: Close merged beads
 

home/roles/emacs/default.nix

@@ -23,55 +23,90 @@ let
     if pkgs.stdenv.isDarwin
     then pkgs.emacs-macport.pkgs.withPackages emacsPackages
     else pkgs.emacs.pkgs.withPackages emacsPackages;
+
+  # Path to doom config directory (relative to this file)
+  doomConfigDir = ./doom;
 in
 {
   options.home.roles.emacs = {
     enable = mkEnableOption "Doom Emacs with vterm and tree-sitter support";
+
+    prebuiltDoom = mkOption {
+      type = types.bool;
+      default = false;
+      description = ''
+        Use nix-doom-emacs-unstraightened to pre-build all Doom packages at
+        nix build time. This eliminates the need to run `doom sync` after
+        first boot, making it ideal for live USB images or immutable systems.
+
+        When enabled, the doom configuration is read-only (stored in nix store).
+      '';
+    };
   };
 
-  config = mkIf cfg.enable {
-    home.packages = [
-      pkgs.emacs-all-the-icons-fonts
-      pkgs.fira-code
-      pkgs.fontconfig
-      pkgs.graphviz
-      pkgs.isort
-      pkgs.nerd-fonts.fira-code
-      pkgs.nerd-fonts.droid-sans-mono
-      pkgs.nil # nix lsp language server
-      pkgs.nixfmt-rfc-style
-      (pkgs.ripgrep.override {withPCRE2 = true;})
-      pkgs.pipenv
-      pkgs.poetry
-      pkgs.python3
-    ];
+  config = mkIf cfg.enable (mkMerge [
+    # Common configuration for both modes
+    {
+      home.packages = [
+        pkgs.emacs-all-the-icons-fonts
+        pkgs.fira-code
+        pkgs.fontconfig
+        pkgs.graphviz
+        pkgs.isort
+        pkgs.nerd-fonts.fira-code
+        pkgs.nerd-fonts.droid-sans-mono
+        pkgs.nil # nix lsp language server
+        pkgs.nixfmt-rfc-style
+        (pkgs.ripgrep.override {withPCRE2 = true;})
+        pkgs.pipenv
+        pkgs.poetry
+        pkgs.python3
+      ];
 
-    programs.emacs = {
-      enable = true;
-      package = defaultEmacsPackage;
-    };
+      fonts.fontconfig.enable = true;
+    }
 
-    fonts.fontconfig.enable = true;
+    # Standard Doom Emacs mode (requires doom sync at runtime)
+    (mkIf (!cfg.prebuiltDoom) {
+      programs.emacs = {
+        enable = true;
+        package = defaultEmacsPackage;
+      };
 
-    # Mount emacs and tree-sitter grammars from nix store
-    home.file = {
-      "${config.xdg.configHome}/emacs".source = doomEmacs;
-    };
+      # Mount emacs and tree-sitter grammars from nix store
+      home.file = {
+        "${config.xdg.configHome}/emacs".source = doomEmacs;
+      };
 
-    home.sessionPath = [
-      "${config.xdg.configHome}/emacs/bin"
-    ];
+      home.sessionPath = [
+        "${config.xdg.configHome}/emacs/bin"
+      ];
 
-    home.sessionVariables = {
-      DOOMDIR = "${config.xdg.configHome}/doom";
-      DOOMLOCALDIR = "${config.xdg.dataHome}/doom";
-    };
+      home.sessionVariables = {
+        DOOMDIR = "${config.xdg.configHome}/doom";
+        DOOMLOCALDIR = "${config.xdg.dataHome}/doom";
+      };
 
-    # TODO: Use mkOutOfStoreSymlink instead?
-    home.activation.doomConfig = lib.hm.dag.entryAfter ["writeBoundary"] ''
-      # Always remove and recreate the symlink to ensure it points to the source directory
-      rm -rf "${config.xdg.configHome}/doom"
-      ln -sf "${config.home.homeDirectory}/nixos-configs/home/roles/emacs/doom" "${config.xdg.configHome}/doom"
-    '';
-  };
+      # TODO: Use mkOutOfStoreSymlink instead?
+      home.activation.doomConfig = lib.hm.dag.entryAfter ["writeBoundary"] ''
+        # Always remove and recreate the symlink to ensure it points to the source directory
+        rm -rf "${config.xdg.configHome}/doom"
+        ln -sf "${config.home.homeDirectory}/nixos-configs/home/roles/emacs/doom" "${config.xdg.configHome}/doom"
+      '';
+    })
+
+    # Pre-built Doom Emacs mode (no doom sync needed - ideal for live USB)
+    (mkIf cfg.prebuiltDoom {
+      programs.doom-emacs = {
+        enable = true;
+        doomDir = doomConfigDir;
+        doomLocalDir = "${config.xdg.dataHome}/doom";
+        # Add extra packages that aren't part of Doom but needed for our config
+        extraPackages = epkgs: [
+          epkgs.vterm
+          epkgs.treesit-grammars.with-all-grammars
+        ];
+      };
+    })
+  ]);
 }

home/roles/emacs/doom/packages.el

@@ -51,11 +51,21 @@
 
 ;; (package! org-caldav)
 
+;; Note: Packages with custom recipes must be pinned for nix-doom-emacs-unstraightened
+;; to build deterministically. Update pins when upgrading packages.
+
 (package! gptel :recipe (:nonrecursive t))
 
 (package! claude-code-ide
-  :recipe (:host github :repo "manzaltu/claude-code-ide.el"))
+  :recipe (:host github :repo "manzaltu/claude-code-ide.el")
+  :pin "760240d7f03ff16f90ede9d4f4243cd94f3fed73")
 
 (package! gptel-tool-library
   :recipe (:host github :repo "aard-fi/gptel-tool-library"
-           :files ("*.el")))
+           :files ("*.el"))
+  :pin "baffc3b0d74a2b7cbda0d5cd6dd7726d6ccaca83")
+
+(package! beads
+  :recipe (:type git :repo "https://codeberg.org/ctietze/beads.el.git"
+           :files ("lisp/*.el"))
+  :pin "f40a6461d3c0fa0969311bbb6a1e30d1bba86c88")

machines/wixos/configuration.nix

@@ -1,62 +0,0 @@
-# Edit this configuration file to define what should be installed on
-# your system. Help is available in the configuration.nix(5) man page, on
-# https://search.nixos.org/options and in the NixOS manual (`nixos-help`).
-
-# NixOS-WSL specific options are documented on the NixOS-WSL repository:
-# https://github.com/nix-community/NixOS-WSL
-
-{ config, lib, pkgs, ... }:
-
-{
-  imports = [
-  ];
-
-  roles = {
-    audio.enable = true;
-    desktop = {
-      enable = true;
-      wayland = true;
-    };
-    users.enable = true;
-  };
-
-  networking.hostName = "wixos";
-
-  wsl.enable = true;
-  wsl.defaultUser = "johno";
-  wsl.startMenuLaunchers = true;
-  wsl.useWindowsDriver = true;
-  wsl.wslConf.network.hostname = "wixos";
-  wsl.wslConf.user.default = "johno";
-
-  services.xserver.videoDrivers = [ "nvidia" ];
-  hardware.graphics = { 
-    enable = true;
-
-    extraPackages = with pkgs; [
-      mesa
-      libvdpau-va-gl
-      libva-vdpau-driver
-    ];
-  };
-  environment.sessionVariables = {
-    LD_LIBRARY_PATH = [
-      "/usr/lib/wsl/lib"
-      "/run/opengl-driver/lib"
-    ];
-  };
-  hardware.nvidia = {
-    modesetting.enable = true;
-    nvidiaSettings = true;
-    open = true;
-    package = config.boot.kernelPackages.nvidiaPackages.latest;
-  };
-
-  # This value determines the NixOS release from which the default
-  # settings for stateful data, like file locations and database versions
-  # on your system were taken. It's perfectly fine and recommended to leave
-  # this value at the release version of the first install of this system.
-  # Before changing this value read the documentation for this option
-  # (e.g. man configuration.nix or on https://nixos.org/nixos/options.html).
-  system.stateVersion = "24.05"; # Did you read the comment?
-}