bd daemon sync: 2026-01-10 19:13:14

.beads/.gitignore

@@ -1,39 +0,0 @@
-# SQLite databases
-*.db
-*.db?*
-*.db-journal
-*.db-wal
-*.db-shm
-
-# Daemon runtime files
-daemon.lock
-daemon.log
-daemon.pid
-bd.sock
-sync-state.json
-last-touched
-
-# Local version tracking (prevents upgrade notification spam after git ops)
-.local_version
-
-# Legacy database files
-db.sqlite
-bd.db
-
-# Worktree redirect file (contains relative path to main repo's .beads/)
-# Must not be committed as paths would be wrong in other clones
-redirect
-
-# Merge artifacts (temporary files from 3-way merge)
-beads.base.jsonl
-beads.base.meta.json
-beads.left.jsonl
-beads.left.meta.json
-beads.right.jsonl
-beads.right.meta.json
-
-# NOTE: Do NOT add negation patterns (e.g., !issues.jsonl) here.
-# They would override fork protection in .git/info/exclude, allowing
-# contributors to accidentally commit upstream issue databases.
-# The JSONL files (issues.jsonl, interactions.jsonl) and config files
-# are tracked by git by default since no pattern above ignores them.

.beads/README.md

@@ -1,81 +0,0 @@
-# Beads - AI-Native Issue Tracking
-
-Welcome to Beads! This repository uses **Beads** for issue tracking - a modern, AI-native tool designed to live directly in your codebase alongside your code.
-
-## What is Beads?
-
-Beads is issue tracking that lives in your repo, making it perfect for AI coding agents and developers who want their issues close to their code. No web UI required - everything works through the CLI and integrates seamlessly with git.
-
-**Learn more:** [github.com/steveyegge/beads](https://github.com/steveyegge/beads)
-
-## Quick Start
-
-### Essential Commands
-
-```bash
-# Create new issues
-bd create "Add user authentication"
-
-# View all issues
-bd list
-
-# View issue details
-bd show <issue-id>
-
-# Update issue status
-bd update <issue-id> --status in_progress
-bd update <issue-id> --status done
-
-# Sync with git remote
-bd sync
-```
-
-### Working with Issues
-
-Issues in Beads are:
-- **Git-native**: Stored in `.beads/issues.jsonl` and synced like code
-- **AI-friendly**: CLI-first design works perfectly with AI coding agents
-- **Branch-aware**: Issues can follow your branch workflow
-- **Always in sync**: Auto-syncs with your commits
-
-## Why Beads?
-
-✨ **AI-Native Design**
-- Built specifically for AI-assisted development workflows
-- CLI-first interface works seamlessly with AI coding agents
-- No context switching to web UIs
-
-🚀 **Developer Focused**
-- Issues live in your repo, right next to your code
-- Works offline, syncs when you push
-- Fast, lightweight, and stays out of your way
-
-🔧 **Git Integration**
-- Automatic sync with git commits
-- Branch-aware issue tracking
-- Intelligent JSONL merge resolution
-
-## Get Started with Beads
-
-Try Beads in your own projects:
-
-```bash
-# Install Beads
-curl -sSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash
-
-# Initialize in your repo
-bd init
-
-# Create your first issue
-bd create "Try out Beads"
-```
-
-## Learn More
-
-- **Documentation**: [github.com/steveyegge/beads/docs](https://github.com/steveyegge/beads/tree/main/docs)
-- **Quick Start Guide**: Run `bd quickstart`
-- **Examples**: [github.com/steveyegge/beads/examples](https://github.com/steveyegge/beads/tree/main/examples)
-
----
-
-*Beads: Issue tracking that moves at the speed of thought* ⚡

.beads/config.yaml

@@ -1,62 +0,0 @@
-# Beads Configuration File
-# This file configures default behavior for all bd commands in this repository
-# All settings can also be set via environment variables (BD_* prefix)
-# or overridden with command-line flags
-
-# Issue prefix for this repository (used by bd init)
-# If not set, bd init will auto-detect from directory name
-# Example: issue-prefix: "myproject" creates issues like "myproject-1", "myproject-2", etc.
-# issue-prefix: ""
-
-# Use no-db mode: load from JSONL, no SQLite, write back after each command
-# When true, bd will use .beads/issues.jsonl as the source of truth
-# instead of SQLite database
-# no-db: false
-
-# Disable daemon for RPC communication (forces direct database access)
-# no-daemon: false
-
-# Disable auto-flush of database to JSONL after mutations
-# no-auto-flush: false
-
-# Disable auto-import from JSONL when it's newer than database
-# no-auto-import: false
-
-# Enable JSON output by default
-# json: false
-
-# Default actor for audit trails (overridden by BD_ACTOR or --actor)
-# actor: ""
-
-# Path to database (overridden by BEADS_DB or --db)
-# db: ""
-
-# Auto-start daemon if not running (can also use BEADS_AUTO_START_DAEMON)
-# auto-start-daemon: true
-
-# Debounce interval for auto-flush (can also use BEADS_FLUSH_DEBOUNCE)
-# flush-debounce: "5s"
-
-# Git branch for beads commits (bd sync will commit to this branch)
-# IMPORTANT: Set this for team projects so all clones use the same sync branch.
-# This setting persists across clones (unlike database config which is gitignored).
-# Can also use BEADS_SYNC_BRANCH env var for local override.
-# If not set, bd sync will require you to run 'bd config set sync.branch <branch>'.
-sync-branch: "beads-sync"
-
-# Multi-repo configuration (experimental - bd-307)
-# Allows hydrating from multiple repositories and routing writes to the correct JSONL
-# repos:
-#   primary: "."  # Primary repo (where this database lives)
-#   additional:   # Additional repos to hydrate from (read-only)
-#     - ~/beads-planning  # Personal planning repo
-#     - ~/work-planning   # Work planning repo
-
-# Integration settings (access with 'bd config get/set')
-# These are stored in the database, not in this file:
-# - jira.url
-# - jira.project
-# - linear.url
-# - linear.api-key
-# - github.org
-# - github.repo

.beads/metadata.json

@@ -1,4 +1,4 @@
 {
   "database": "beads.db",
-  "jsonl_export": "sync_base.jsonl"
+  "jsonl_export": "issues.jsonl"
 }

.gitattributes

@@ -1,3 +0,0 @@
-
-# Use bd merge for beads JSONL files
-.beads/issues.jsonl merge=beads

.gitignore

@@ -1,3 +1,2 @@
 result
 thoughts
-.beads

flake.lock

@@ -21,45 +21,6 @@
         "type": "github"
       }
     },
-    "doomemacs": {
-      "flake": false,
-      "locked": {
-        "lastModified": 1767773143,
-        "narHash": "sha256-QL/t9v2kFNxBDyNJb/s411o3mxujan+QX5IZglTdpTk=",
-        "owner": "doomemacs",
-        "repo": "doomemacs",
-        "rev": "3e15fb36d7f94f0a218bda977be4d3f5da983a71",
-        "type": "github"
-      },
-      "original": {
-        "owner": "doomemacs",
-        "repo": "doomemacs",
-        "type": "github"
-      }
-    },
-    "emacs-overlay": {
-      "inputs": {
-        "nixpkgs": [
-          "nix-doom-emacs-unstraightened"
-        ],
-        "nixpkgs-stable": [
-          "nix-doom-emacs-unstraightened"
-        ]
-      },
-      "locked": {
-        "lastModified": 1768011937,
-        "narHash": "sha256-SnU2XTo34vwVaijs+4VwcXTNwMWO4nwzzs08N39UagA=",
-        "owner": "nix-community",
-        "repo": "emacs-overlay",
-        "rev": "79abf71d9897cf3b5189f7175cda1b1102abc65c",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nix-community",
-        "repo": "emacs-overlay",
-        "type": "github"
-      }
-    },
     "flake-compat": {
       "flake": false,
       "locked": {
@@ -198,27 +159,6 @@
         "type": "github"
       }
     },
-    "nix-doom-emacs-unstraightened": {
-      "inputs": {
-        "doomemacs": "doomemacs",
-        "emacs-overlay": "emacs-overlay",
-        "nixpkgs": [],
-        "systems": "systems_2"
-      },
-      "locked": {
-        "lastModified": 1768034604,
-        "narHash": "sha256-62pIZMvGHhYJmMiiBsxHqZt/dFyENPcFHlJq5NJF3Sw=",
-        "owner": "marienz",
-        "repo": "nix-doom-emacs-unstraightened",
-        "rev": "9b3b8044fe4ccdcbb2d6f733d7dbe4d5feea18bc",
-        "type": "github"
-      },
-      "original": {
-        "owner": "marienz",
-        "repo": "nix-doom-emacs-unstraightened",
-        "type": "github"
-      }
-    },
     "nix-github-actions": {
       "inputs": {
         "nixpkgs": [
@@ -363,7 +303,6 @@
         "home-manager-unstable": "home-manager-unstable",
         "jovian": "jovian",
         "nix-darwin": "nix-darwin",
-        "nix-doom-emacs-unstraightened": "nix-doom-emacs-unstraightened",
         "nixos-wsl": "nixos-wsl",
         "nixpkgs": "nixpkgs_2",
         "nixpkgs-unstable": "nixpkgs-unstable",
@@ -385,21 +324,6 @@
         "repo": "default",
         "type": "github"
       }
-    },
-    "systems_2": {
-      "locked": {
-        "lastModified": 1681028828,
-        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
-        "owner": "nix-systems",
-        "repo": "default",
-        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nix-systems",
-        "repo": "default",
-        "type": "github"
-      }
     }
   },
   "root": "root",

flake.nix

@@ -47,84 +47,92 @@
       url = "github:steveyegge/beads";
       inputs.nixpkgs.follows = "nixpkgs-unstable";
     };
-
-    nix-doom-emacs-unstraightened = {
-      url = "github:marienz/nix-doom-emacs-unstraightened";
-      # Don't follow nixpkgs to avoid rebuild issues with emacs-overlay
-      inputs.nixpkgs.follows = "";
-    };
   };
 
   outputs = { self, nixpkgs, nixpkgs-unstable, nixos-wsl, ... } @ inputs: let
-    # Shared overlay function to reduce duplication across module sets
+    nixosModules = [
-    # Parameters:
+      ./roles
-    #   unstableOverlays: Additional overlays to apply when importing nixpkgs-unstable
+    ] ++ [
-    mkBaseOverlay = { unstableOverlays ? [] }: (final: prev: {
+      inputs.home-manager.nixosModules.home-manager
+      {
+        nixpkgs.overlays = [
+          (final: prev: {
             unstable = import nixpkgs-unstable {
               system = prev.stdenv.hostPlatform.system;
               config.allowUnfree = true;
-        overlays = unstableOverlays;
             };
             custom = prev.callPackage ./packages {};
             # Compatibility: bitwarden renamed to bitwarden-desktop in unstable
             bitwarden-desktop = prev.bitwarden-desktop or prev.bitwarden;
-    });
+          })
-
+        ];
-    # Shared home-manager configuration factory
-    # Parameters:
-    #   sharedModules: Additional modules to include in home-manager.sharedModules
-    mkHomeManagerConfig = { sharedModules ? [] }: {
         home-manager.useGlobalPkgs = true;
         home-manager.useUserPackages = true;
-      home-manager.sharedModules = sharedModules ++ [
+        home-manager.sharedModules = [
-        inputs.nix-doom-emacs-unstraightened.homeModule
+          inputs.plasma-manager.homeModules.plasma-manager
         ];
         home-manager.extraSpecialArgs = {
           globalInputs = inputs;
         };
-    };
-
-    nixosModules = [
-      ./roles
-      inputs.home-manager.nixosModules.home-manager
-      {
-        nixpkgs.overlays = [ (mkBaseOverlay {}) ];
       }
-      (mkHomeManagerConfig {
-        sharedModules = [ inputs.plasma-manager.homeModules.plasma-manager ];
-      })
     ];
-
     # Modules for unstable-based systems (like nix-deck)
     nixosModulesUnstable = [
       ./roles
+    ] ++ [
       inputs.home-manager-unstable.nixosModules.home-manager
       inputs.jovian.nixosModules.jovian
       {
-        nixpkgs.overlays = [ (mkBaseOverlay {}) ];
+        nixpkgs.overlays = [
-      }
+          (final: prev: {
-      (mkHomeManagerConfig {
+            unstable = import nixpkgs-unstable {
-        sharedModules = [ inputs.plasma-manager-unstable.homeModules.plasma-manager ];
+              system = prev.stdenv.hostPlatform.system;
+              config.allowUnfree = true;
+            };
+            custom = prev.callPackage ./packages {};
+            # Compatibility: bitwarden renamed to bitwarden-desktop in unstable
+            bitwarden-desktop = prev.bitwarden-desktop or prev.bitwarden;
           })
         ];
-
+        home-manager.useGlobalPkgs = true;
+        home-manager.useUserPackages = true;
+        home-manager.sharedModules = [
+          inputs.plasma-manager-unstable.homeModules.plasma-manager
+        ];
+        home-manager.extraSpecialArgs = {
+          globalInputs = inputs;
+        };
+      }
+    ];
     darwinModules = [
       ./roles/darwin.nix
+    ] ++ [
       inputs.home-manager.darwinModules.home-manager
       {
         nixpkgs.overlays = [
-          (mkBaseOverlay {
+          (final: prev: {
+            unstable = import nixpkgs-unstable {
+              system = prev.stdenv.hostPlatform.system;
+              config.allowUnfree = true;
+              overlays = [
                 # Override claude-code in unstable to use our custom GCS-based build
                 # (needed for corporate networks that block npm registry)
-            unstableOverlays = [
                 (ufinal: uprev: {
-                claude-code = uprev.callPackage ./packages/claude-code {};
+                  claude-code = prev.custom.claude-code or (prev.callPackage ./packages {}).claude-code;
                 })
               ];
+            };
+            custom = prev.callPackage ./packages {};
+            # Compatibility: bitwarden renamed to bitwarden-desktop in unstable
+            bitwarden-desktop = prev.bitwarden-desktop or prev.bitwarden;
           })
         ];
+        home-manager.useGlobalPkgs = true;
+        home-manager.useUserPackages = true;
+        home-manager.extraSpecialArgs = {
+          globalInputs = inputs;
+        };
       }
-      (mkHomeManagerConfig { sharedModules = []; })
     ];
 
   in {
@@ -211,11 +219,7 @@
       system = "x86_64-linux";
       modules = nixosModules ++ [
         ./machines/john-endesktop/configuration.nix
-        inputs.home-manager.nixosModules.home-manager
+        # Minimal server - no home-manager needed
-        {
-          home-manager.users.johno = import ./home/home-server.nix;
-          home-manager.extraSpecialArgs = { inherit system; };
-        }
       ];
     };
 

home/home-desktop.nix

@@ -23,7 +23,6 @@
     kubectl.enable = true;
     tmux.enable = true;
     plasma-manager.enable = true;
-    starship.enable = true;
   };
 
   targets.genericLinux.enable = true;

home/home-laptop-compact.nix

@@ -23,7 +23,6 @@
     plasma-manager.enable = true;
     emacs.enable = true;
     i3_sway.enable = true;
-    starship.enable = true;
 
     # Launcher wrappers for excluded/optional packages
     launchers = {

home/home-live-usb.nix

@@ -14,14 +14,8 @@
     desktop.enable = true;
     tmux.enable = true;
     plasma-manager.enable = true;
-    emacs = {
+    emacs.enable = true;
-      enable = true;
-      # Use pre-built Doom Emacs - all packages built at nix build time
-      # This means no doom sync is needed after booting the live USB
-      prebuiltDoom = true;
-    };
     i3_sway.enable = true;
-    starship.enable = true;
     # development.enable = false;  # Not needed for live USB
     # communication.enable = false; # Not needed for live USB
     # office.enable = false;       # Not needed for live USB

home/home-media-center.nix

@@ -20,7 +20,6 @@
     plasma-manager.enable = true;
     emacs.enable = true;
     i3_sway.enable = true;
-    starship.enable = true;
     # office.enable = false;    # Not needed for media center
     # sync.enable = false;      # Shared machine, no personal file sync
   };

home/home-server.nix

@@ -1,26 +0,0 @@
-{ pkgs, globalInputs, system, ... }:
-
-{
-  # Home Manager configuration for servers (minimal with development tools)
-  home.username = "johno";
-  home.homeDirectory = "/home/johno";
-  home.stateVersion = "24.05";
-
-  # Minimal roles for server with development capability
-  home.roles = {
-    base.enable = true;
-    development.enable = true;
-    emacs.enable = true;
-    starship.enable = true;
-    tmux.enable = true;
-  };
-
-  targets.genericLinux.enable = true;
-  home.sessionVariables = {};
-  home.sessionPath = [];
-
-  imports = [
-    ./roles
-    ./roles/base-linux
-  ];
-}

home/roles/default.nix

@@ -19,6 +19,5 @@
     ./sync
     ./tmux
     ./emacs
-    ./starship
   ];
 }

home/roles/development/default.nix

@@ -85,25 +85,11 @@ in
         fi
       done
 
-      # Copy local skills from this repo (with retry for race conditions with running Claude)
-      for file in ${./skills}/*.md; do
-        if [ -f "$file" ]; then
-          filename=$(basename "$file" .md)
-          dest="$HOME/.claude/commands/''${filename}.md"
-          # Remove existing file first, then copy with retry on failure
-          rm -f "$dest" 2>/dev/null || true
-          if ! cp "$file" "$dest" 2>/dev/null; then
-            sleep 0.5
-            cp "$file" "$dest" || echo "Warning: Failed to copy $filename.md to commands"
-          fi
-        fi
-      done
-
       $DRY_RUN_CMD echo "Claude Code humanlayer commands and agents installed successfully${
         if cfg.allowArbitraryClaudeCodeModelSelection
         then " (model specifications preserved)"
         else " (model selection removed)"
-      } + local skills"
+      }"
     '';
 
     # Set up beads Claude Code integration (hooks for SessionStart/PreCompact)

home/roles/development/skills/parallel_beads.md

@@ -1,205 +0,0 @@
----
-description: Orchestrate parallel bead processing with worktrees, PRs, and reviews
----
-
-# Parallel Beads Workflow
-
-This skill orchestrates parallel bead processing using subagents. Each bead gets its own worktree, implementation, PR, and review.
-
-## Phase 1: Selection
-
-1. **Get ready beads**: Run `bd ready` to list all beads with no blockers
-2. **Present selection**: Use `AskUserQuestion` with `multiSelect: true` to let the user choose which beads to work on
-   - Include bead ID and title for each option
-   - Allow selection of multiple beads
-
-Example:
-```
-AskUserQuestion with:
-- question: "Which beads do you want to work on in parallel?"
-- multiSelect: true
-- options from bd ready output
-```
-
-## Phase 2: Parallel Implementation
-
-For each selected bead, launch a subagent using the Task tool. All subagents should be launched in parallel (single message with multiple Task tool calls).
-
-### Subagent Instructions Template
-
-Each implementation subagent should receive these instructions:
-
-```
-Work on bead [BEAD_ID]: [BEAD_TITLE]
-
-1. **Create worktree**:
-   - Branch name: `bead/[BEAD_ID]`
-   - Worktree path: `~/wt/[REPO_NAME]/[BEAD_ID]`
-   - Command: `git worktree add -b bead/[BEAD_ID] ~/wt/[REPO_NAME]/[BEAD_ID]`
-
-2. **Review the bead requirements**:
-   - Run `bd show [BEAD_ID]` to understand the acceptance criteria
-   - Note any external issue references (GitHub issues, Linear tickets, etc.)
-
-3. **Implement the changes**:
-   - Work in the worktree directory
-   - Complete all acceptance criteria listed in the bead
-   - Run any relevant tests or checks
-
-4. **Commit and push**:
-   - Stage all changes: `git add -A`
-   - Create a descriptive commit message
-   - Push the branch: `git push -u origin bead/[BEAD_ID]`
-
-5. **Create a PR**:
-   - Detect hosting provider from origin URL: `git remote get-url origin`
-   - If URL contains `github.com`, use `gh`; otherwise use `tea` (Gitea/Forgejo)
-   - PR title: "[BEAD_ID] [BEAD_TITLE]"
-   - PR body must include:
-     - Reference to bead ID: "Implements bead: [BEAD_ID]"
-     - Any external issue references from the bead (e.g., "Closes #123")
-     - Summary of changes
-   - For GitHub (`gh`):
-     ```bash
-     gh pr create --title "[BEAD_ID] [BEAD_TITLE]" --body "$(cat <<'EOF'
-     ## Summary
-     [Brief description of changes]
-
-     ## Bead Reference
-     Implements bead: [BEAD_ID]
-
-     ## External Issues
-     [Any linked issues from the bead]
-
-     ## Changes
-     - [List of changes made]
-     EOF
-     )"
-     ```
-   - For Gitea (`tea`):
-     ```bash
-     tea pr create --head bead/[BEAD_ID] --base main \
-       --title "[BEAD_ID] [BEAD_TITLE]" \
-       --description "## Summary
-     [Brief description of changes]
-
-     ## Bead Reference
-     Implements bead: [BEAD_ID]
-
-     ## External Issues
-     [Any linked issues from the bead]
-
-     ## Changes
-     - [List of changes made]"
-     ```
-
-6. **Update bead status**:
-   - Mark the bead as "in_review": `bd update [BEAD_ID] --status=in_review`
-   - Add the PR URL to the bead notes: `bd update [BEAD_ID] --notes="$(bd show [BEAD_ID] --json | jq -r '.notes')
-
-PR: [PR_URL]"`
-
-7. **Report results**:
-   - Return: PR URL, bead ID, success/failure status
-   - If blocked or unable to complete, explain what's blocking progress
-```
-
-### Launching Subagents
-
-Use `subagent_type: "general-purpose"` for implementation subagents. Launch all selected beads' subagents in a single message for parallel execution:
-
-```
-<Task calls for each selected bead - all in one message>
-```
-
-Collect results from all subagents before proceeding.
-
-## Phase 3: Parallel Review
-
-After all implementation subagents complete, launch review subagents for each PR.
-
-### Review Subagent Instructions Template
-
-```
-Review PR for bead [BEAD_ID]
-
-1. **Detect hosting provider**: Run `git remote get-url origin` - if it contains `github.com` use `gh`, otherwise use `tea`
-
-2. **Read the PR**:
-   - For GitHub: `gh pr view [PR_NUMBER] --json title,body,additions,deletions,files`
-   - For Gitea: `tea pr view [PR_NUMBER]`
-   - View the diff: `git diff main...bead/[BEAD_ID]`
-
-3. **Review against acceptance criteria**:
-   - Run `bd show [BEAD_ID]` to get the acceptance criteria
-   - Verify each criterion is addressed
-
-4. **Leave review comments**:
-   - For GitHub: `gh pr review [PR_NUMBER] --comment --body "[COMMENTS]"`
-   - For Gitea: `tea pr review [PR_NUMBER] --comment "[COMMENTS]"`
-   - Include:
-     - Acceptance criteria checklist (which are met, which might be missing)
-     - Code quality observations
-     - Suggestions for improvement
-
-5. **Return summary**:
-   - Overall assessment (ready to merge / needs changes)
-   - Key findings
-```
-
-Launch all review subagents in parallel.
-
-## Phase 4: Cleanup and Summary
-
-After reviews complete:
-
-1. **Clean up worktrees**:
-   ```bash
-   git worktree remove ~/wt/[REPO_NAME]/[BEAD_ID] --force
-   ```
-   Do this for each bead's worktree.
-
-2. **Provide final summary**:
-   Present a table or list with:
-   - Bead ID
-   - PR URL
-   - Status (success / failed / blocked)
-   - Review summary
-   - Any failures or blockers encountered
-
-Example output:
-```
-## Parallel Beads Summary
-
-| Bead | PR | Bead Status | Review |
-|------|-----|-------------|--------|
-| beads-abc | #123 | in_review | Approved |
-| beads-xyz | #124 | in_review | Needs changes |
-| beads-123 | - | open (failed) | Blocked by missing dependency |
-
-### Failures/Blockers
-- beads-123: Could not complete because [reason]
-
-### Next Steps
-- Review PRs that need changes
-- Address blockers for failed beads
-- Run `/reconcile_beads` after PRs are merged to close beads
-```
-
-## Error Handling
-
-- **Subagent failures**: If a subagent fails or times out, note it in the summary but continue with other beads
-- **PR creation failures**: Report the error but continue with reviews of successful PRs
-- **Worktree conflicts**: If a worktree already exists, ask the user if they want to remove it or skip that bead
-
-## Resource Limits
-
-- Consider limiting concurrent subagents to 3-5 to avoid overwhelming system resources
-- If user selects more beads than the limit, process them in batches
-
-## Notes
-
-- This workflow integrates with the beads system (`bd` commands)
-- Worktrees are created in `~/wt/[REPO_NAME]/` by convention
-- Each bead gets its own isolated branch and worktree
-- PRs automatically reference the bead ID for traceability

home/roles/development/skills/reconcile_beads.md

@@ -1,88 +0,0 @@
----
-description: Reconcile beads with merged PRs and close completed beads
----
-
-# Reconcile Beads Workflow
-
-This skill reconciles beads that are in `in_review` status with their corresponding PRs. If a PR has been merged, the bead is closed.
-
-## Prerequisites
-
-- Custom status `in_review` must be configured: `bd config set status.custom "in_review"`
-- Beads in `in_review` status should have a PR URL in their notes
-
-## Workflow
-
-### Step 1: Find beads in review
-
-```bash
-bd list --status=in_review
-```
-
-### Step 2: For each bead, check PR status
-
-1. **Get the PR URL from bead notes**:
-   ```bash
-   bd show [BEAD_ID] --json | jq -r '.[0].notes'
-   ```
-   Note: `bd show --json` returns an array, so use `.[0]` to access the first element.
-   Extract the PR URL (look for lines starting with "PR:" or containing pull request URLs).
-   Extract the PR number: `echo "$NOTES" | grep -oP '/pulls/\K\d+'`
-
-2. **Detect hosting provider**:
-   - Run `git remote get-url origin`
-   - If URL contains `github.com`, use `gh`; otherwise use `tea` (Gitea/Forgejo)
-
-3. **Check PR status**:
-   - For GitHub:
-     ```bash
-     gh pr view [PR_NUMBER] --json state,merged
-     ```
-   - For Gitea:
-     ```bash
-     tea pr list --state=closed
-     ```
-     Look for the PR number in the INDEX column with STATE "merged".
-     Note: `tea pr view [PR_NUMBER]` lists all PRs, not a specific one. Use `tea pr list --state=closed` and look for your PR number in the results.
-
-### Step 3: Close merged beads
-
-If the PR is merged:
-```bash
-bd close [BEAD_ID] --reason="PR merged: [PR_URL]"
-```
-
-### Step 4: Report summary
-
-Present results:
-
-```
-## Beads Reconciliation Summary
-
-### Closed (PR Merged)
-| Bead | PR | Title |
-|------|-----|-------|
-| beads-abc | #123 | Feature X |
-| beads-xyz | #456 | Bug fix Y |
-
-### Still in Review
-| Bead | PR | Status | Title |
-|------|-----|--------|-------|
-| beads-def | #789 | Open | Feature Z |
-
-### Issues Found
-- beads-ghi: No PR URL found in notes
-- beads-jkl: PR #999 not found (may have been deleted)
-```
-
-## Error Handling
-
-- **Missing PR URL**: Skip the bead and report it
-- **PR not found**: Report the error but continue with other beads
-- **API errors**: Report and continue
-
-## Notes
-
-- This skill complements `/parallel_beads` which sets beads to `in_review` status
-- Run this skill periodically or after merging PRs to keep beads in sync
-- Beads with closed (but not merged) PRs are not automatically closed - they may need rework

home/roles/emacs/default.nix

@@ -23,30 +23,13 @@ let
     if pkgs.stdenv.isDarwin
     then pkgs.emacs-macport.pkgs.withPackages emacsPackages
     else pkgs.emacs.pkgs.withPackages emacsPackages;
-
-  # Path to doom config directory (relative to this file)
-  doomConfigDir = ./doom;
 in
 {
   options.home.roles.emacs = {
     enable = mkEnableOption "Doom Emacs with vterm and tree-sitter support";
-
-    prebuiltDoom = mkOption {
-      type = types.bool;
-      default = false;
-      description = ''
-        Use nix-doom-emacs-unstraightened to pre-build all Doom packages at
-        nix build time. This eliminates the need to run `doom sync` after
-        first boot, making it ideal for live USB images or immutable systems.
-
-        When enabled, the doom configuration is read-only (stored in nix store).
-      '';
-    };
   };
 
-  config = mkIf cfg.enable (mkMerge [
+  config = mkIf cfg.enable {
-    # Common configuration for both modes
-    {
     home.packages = [
       pkgs.emacs-all-the-icons-fonts
       pkgs.fira-code
@@ -63,16 +46,13 @@ in
       pkgs.python3
     ];
 
-      fonts.fontconfig.enable = true;
-    }
-
-    # Standard Doom Emacs mode (requires doom sync at runtime)
-    (mkIf (!cfg.prebuiltDoom) {
     programs.emacs = {
       enable = true;
       package = defaultEmacsPackage;
     };
 
+    fonts.fontconfig.enable = true;
+
     # Mount emacs and tree-sitter grammars from nix store
     home.file = {
       "${config.xdg.configHome}/emacs".source = doomEmacs;
@@ -93,20 +73,5 @@ in
       rm -rf "${config.xdg.configHome}/doom"
       ln -sf "${config.home.homeDirectory}/nixos-configs/home/roles/emacs/doom" "${config.xdg.configHome}/doom"
     '';
-    })
-
-    # Pre-built Doom Emacs mode (no doom sync needed - ideal for live USB)
-    (mkIf cfg.prebuiltDoom {
-      programs.doom-emacs = {
-        enable = true;
-        doomDir = doomConfigDir;
-        doomLocalDir = "${config.xdg.dataHome}/doom";
-        # Add extra packages that aren't part of Doom but needed for our config
-        extraPackages = epkgs: [
-          epkgs.vterm
-          epkgs.treesit-grammars.with-all-grammars
-        ];
   };
-    })
-  ]);
 }

home/roles/emacs/doom/packages.el

@@ -51,21 +51,11 @@
 
 ;; (package! org-caldav)
 
-;; Note: Packages with custom recipes must be pinned for nix-doom-emacs-unstraightened
-;; to build deterministically. Update pins when upgrading packages.
-
 (package! gptel :recipe (:nonrecursive t))
 
 (package! claude-code-ide
-  :recipe (:host github :repo "manzaltu/claude-code-ide.el")
+  :recipe (:host github :repo "manzaltu/claude-code-ide.el"))
-  :pin "760240d7f03ff16f90ede9d4f4243cd94f3fed73")
 
 (package! gptel-tool-library
   :recipe (:host github :repo "aard-fi/gptel-tool-library"
-           :files ("*.el"))
+           :files ("*.el")))
-  :pin "baffc3b0d74a2b7cbda0d5cd6dd7726d6ccaca83")
-
-(package! beads
-  :recipe (:type git :repo "https://codeberg.org/ctietze/beads.el.git"
-           :files ("lisp/*.el"))
-  :pin "f40a6461d3c0fa0969311bbb6a1e30d1bba86c88")

home/roles/starship/default.nix

@@ -1,72 +0,0 @@
-{ config, lib, pkgs, ... }:
-
-with lib;
-
-let
-  cfg = config.home.roles.starship;
-in
-{
-  options.home.roles.starship = {
-    enable = mkEnableOption "starship cross-shell prompt";
-  };
-
-  config = mkIf cfg.enable {
-    programs.starship = {
-      enable = true;
-      enableBashIntegration = true;
-      enableZshIntegration = true;
-
-      settings = {
-        add_newline = true;
-
-        character = {
-          success_symbol = "[>](bold green)";
-          error_symbol = "[x](bold red)";
-          vimcmd_symbol = "[<](bold green)";
-        };
-
-        directory = {
-          truncation_length = 4;
-          truncate_to_repo = true;
-        };
-
-        git_branch = {
-          symbol = "";
-          format = "[$symbol$branch(:$remote_branch)]($style) ";
-        };
-
-        git_status = {
-          format = "([$all_status$ahead_behind]($style) )";
-        };
-
-        nix_shell = {
-          symbol = "";
-          format = "[$symbol$state( \\($name\\))]($style) ";
-        };
-
-        cmd_duration = {
-          min_time = 2000;
-          format = "[$duration]($style) ";
-        };
-
-        # Disable modules that are noisy or rarely needed
-        package.disabled = true;
-        nodejs.disabled = true;
-        python.disabled = true;
-        ruby.disabled = true;
-        java.disabled = true;
-        golang.disabled = true;
-        rust.disabled = true;
-        php.disabled = true;
-        lua.disabled = true;
-        perl.disabled = true;
-        terraform.disabled = true;
-        kubernetes.disabled = true;
-        docker_context.disabled = true;
-        aws.disabled = true;
-        gcloud.disabled = true;
-        azure.disabled = true;
-      };
-    };
-  };
-}

machines/john-endesktop/MIGRATION_PLAN.md

@@ -170,7 +170,6 @@ This document outlines the plan to migrate the john-endesktop server from Arch L
    ```bash
    blkid /dev/nvme0n1p5
    # Note the UUID for updating hardware-configuration.nix
-/dev/nvme0n1p5: LABEL="nixos" UUID="5f4ad025-bfab-4aed-a933-6638348059e5" UUID_SUB="4734d820-7b8a-4b7f-853a-026021c1d204" BLOCK_SIZE="4096" TYPE="btrfs" PARTLABEL="data" PARTUUID="9ea025df-cdb7-48fd-b5d4-37cd5d8588eb"
    ```
 
 8. **Copy your NixOS configuration to the server**
@@ -389,11 +388,11 @@ After successful migration and 24-48 hours of stable operation:
 
 Pre-migration:
 - [x] nvme0n1p5 removal from media pool complete
-- [x] Recent backup verified (< 24 hours)
+- [ ] Recent backup verified (< 24 hours)
-- [x] Maintenance window scheduled
+- [ ] Maintenance window scheduled
-- [x] NixOS ISO downloaded
+- [ ] NixOS ISO downloaded
-- [x] Bootable USB created
+- [ ] Bootable USB created
-- [x] NixOS config builds successfully
+- [ ] NixOS config builds successfully
 
 During migration:
 - [ ] ZFS pools exported

machines/john-endesktop/hardware-configuration.nix

@@ -18,29 +18,12 @@
   # File systems - these will need to be updated after installation
   # The nvme0n1p5 partition will be formatted as btrfs for NixOS root
   fileSystems."/" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
+    # Update this device path after installation
+    device = "/dev/disk/by-uuid/CHANGE-THIS-TO-YOUR-UUID";
     fsType = "btrfs";
     options = [ "subvol=@" "compress=zstd" "noatime" ];
   };
 
-  fileSystems."/home" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@home" "compress=zstd" "noatime" ];
-  };
-
-  fileSystems."/nix" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@nix" "compress=zstd" "noatime" ];
-  };
-
-  fileSystems."/var/log" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@log" "compress=zstd" "noatime" ];
-  };
-
   fileSystems."/boot" = {
     # This should match your current EFI partition
     device = "/dev/disk/by-uuid/F5C6-D570";
@@ -52,8 +35,10 @@
   # The pools should be imported automatically via boot.zfs.extraPools
   # /media and /swarmvols will be mounted by ZFS
 
-  # No swap needed - 23GB RAM is sufficient for this NFS/ZFS server
+  # Swap - using ZFS zvol
-  swapDevices = [ ];
+  swapDevices = [
+    { device = "/dev/zvol/media/swap"; }
+  ];
 
   # CPU microcode
   hardware.cpu.intel.updateMicrocode = lib.mkDefault config.hardware.enableRedistributableFirmware;

roles/common.nix

@@ -1,35 +0,0 @@
-# Common configuration shared between NixOS and Darwin
-{ lib, pkgs, ... }:
-
-{
-  config = {
-    time.timeZone = "America/Los_Angeles";
-
-    environment.systemPackages = with pkgs; [
-      git
-      glances
-      pciutils
-      tree
-      usbutils
-      vim
-    ];
-
-    nix = {
-      package = pkgs.nix;
-      settings = {
-        experimental-features = [ "nix-command" "flakes" ];
-        max-jobs = "auto";
-        trusted-users = [ "johno" ];
-        substituters = [
-        ];
-      };
-
-      gc = {
-        automatic = true;
-        options = "--delete-older-than 10d";
-      };
-    };
-
-    nixpkgs.config.allowUnfree = true;
-  };
-}

roles/darwin.nix

@@ -7,10 +7,6 @@ let
   setEnvironmentPath = "${config.system.build.setEnvironment}";
 in
 {
-  imports = [
-    ./common.nix
-  ];
-
   config = {
     # Salt manages /etc/bashrc, /etc/zshrc, /etc/zshenv
     # nix-darwin writes to .local variants for nix-specific configuration
@@ -47,6 +43,8 @@ in
       fi
     '';
 
+    time.timeZone = "America/Los_Angeles";
+
     # System preferences
     system.defaults = {
       # Custom keyboard shortcuts
@@ -81,5 +79,42 @@ in
         };
       };
     };
+
+    environment.systemPackages = with pkgs; [
+      git
+      glances
+      pciutils
+      tree
+      usbutils
+      vim
+    ];
+
+    nix = {
+      package = pkgs.nix;
+      # distributedBuilds = true;
+      # buildMachines = [{
+      #   hostName = "z790prors.oglehome";
+      #   system = "x86_64-linux";
+      #   protocol = "ssh-ng";
+      #   sshUser = "johno";
+      #   sshKey = "/root/.ssh/id_ed25519";
+      #   maxJobs = 3;
+      #   speedFactor = 2;
+      # }];
+      settings = {
+        experimental-features = [ "nix-command" "flakes" ];
+        max-jobs = "auto";
+        trusted-users = [ "johno" ];
+        substituters = [
+        ];
+      };
+
+      gc = {
+        automatic = true;
+        options = "--delete-older-than 10d";
+      };
+    };
+
+    nixpkgs.config.allowUnfree = true;
   };
 }

roles/default.nix

@@ -4,7 +4,6 @@ with lib;
 
 {
   imports = [
-    ./common.nix
     ./audio
     ./bluetooth
     ./btrfs
@@ -32,6 +31,7 @@ with lib;
       LC_TELEPHONE = "en_US.UTF-8";
       LC_TIME = "en_US.UTF-8";
     };
+    time.timeZone = "America/Los_Angeles";
 
     services.xserver.xkb = {
       layout = "us";
@@ -49,7 +49,42 @@ with lib;
     # Enable the OpenSSH daemon.
     services.openssh.enable = true;
 
-    # NixOS-specific gc option (not available on Darwin)
+    environment.systemPackages = with pkgs; [
-    nix.gc.randomizedDelaySec = "14m";
+      git
+      glances
+      pciutils
+      tree
+      usbutils
+      vim
+    ];
+
+    nix = {
+      package = pkgs.nix;
+      # distributedBuilds = true;
+      # buildMachines = [{
+      #   hostName = "z790prors.oglehome";
+      #   system = "x86_64-linux";
+      #   protocol = "ssh-ng";
+      #   sshUser = "johno";
+      #   sshKey = "/root/.ssh/id_ed25519";
+      #   maxJobs = 3;
+      #   speedFactor = 2;
+      # }];
+      settings = {
+        experimental-features = [ "nix-command" "flakes" ];
+        max-jobs = "auto";
+        trusted-users = [ "johno" ];
+        substituters = [
+        ];
+      };
+
+      gc = {
+        automatic = true;
+        randomizedDelaySec = "14m";
+        options = "--delete-older-than 10d";
+      };
+    };
+
+    nixpkgs.config.allowUnfree = true;
   };
 }