feat(skills): Enforce worktree/branch workflow in parallel_beads

WSL is no longer used. This removes:
- machines/wixos/ directory and configuration.nix
- nixos-wsl input from flake.nix
- nixosConfigurations.wixos output
- References to wixos in AGENTS.md and .goosehints

Implements bead: nixos-configs-2mk

.goosehints

@@ -9,7 +9,7 @@ Directory Structure:
 ----------------------
 • packages/      - Custom Nix packages leveraged across various configurations.
 • roles/         - Role-based configurations (e.g., kodi, bluetooth) each with its own module (default.nix) for inclusion in machine setups.
-• machines/      - Machine-specific configurations (e.g., nix-book, z790prors, boxy, wixos) including configuration.nix and hardware-configuration.nix tailored for each hardware.
+• machines/      - Machine-specific configurations (e.g., nix-book, zix790prors, boxy) including configuration.nix and hardware-configuration.nix tailored for each hardware.
 • home/          - Home-manager configurations for personal environments and application settings (e.g., home-nix-book.nix, home-z790prors.nix).
 
 Design Principles:

AGENTS.md

@@ -14,7 +14,7 @@ This repository uses `beads` for issue tracking and management. Run `bd quicksta
 
 ### Flake Structure
 - **flake.nix**: Main entry point defining inputs (nixpkgs, home-manager, plasma-manager, etc.) and outputs for multiple NixOS configurations
-- **Machines**: `nix-book`, `boxy`, `wixos` (WSL configuration), `zix790prors`, `live-usb`, `johno-macbookpro` (Darwin/macOS)
+- **Machines**: `nix-book`, `boxy`, `zix790prors`, `live-usb`, `johno-macbookpro` (Darwin/macOS)
 - **Home configurations**: Standalone home-manager configuration for user `johno`
 
 ### Directory Structure
@@ -78,7 +78,6 @@ The repository also uses a modular home-manager role system for user-space confi
 - **nix-book**: Compact laptop → excludes office/media roles due to SSD space constraints
 - **boxy**: Living room media center → optimized for media consumption, excludes sync/office (shared machine)
 - **zix790prors**: All-purpose workstation → full desktop experience with all roles enabled
-- **wixos**: WSL2 development → full desktop experience, inherits from zix790prors Windows host
 - **live-usb**: Temporary environment → only base + desktop roles, no persistent services
 - **johno-macbookpro**: macOS work laptop → Darwin-specific configuration with development tools
 
@@ -111,7 +110,6 @@ darwin-rebuild build --flake .#johno-macbookpro
 - `nix-book`: Compact laptop with storage constraints, uses `home/home-laptop-compact.nix`
 - `boxy`: Shared living room media center/gaming desktop with AMD GPU, uses `home/home-media-center.nix`
 - `zix790prors`: Powerful all-purpose workstation (gaming, 3D modeling, development), dual-boots Windows 11 with shared btrfs /games partition, uses `home/home-desktop.nix`
-- `wixos`: WSL2 development environment running in Windows partition of zix790prors, uses `home/home-desktop.nix`
 - `live-usb`: Bootable ISO configuration, uses `home/home-live-usb.nix`
 - `johno-macbookpro`: macOS work laptop, uses `home/home-darwin-work.nix`
 

flake.lock

@@ -60,22 +60,6 @@
         "type": "github"
       }
     },
-    "flake-compat": {
-      "flake": false,
-      "locked": {
-        "lastModified": 1765121682,
-        "narHash": "sha256-4VBOP18BFeiPkyhy9o4ssBNQEvfvv1kXkasAYd0+rrA=",
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "rev": "65f23138d8d09a92e30f1e5c87611b23ef451bf3",
-        "type": "github"
-      },
-      "original": {
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "type": "github"
-      }
-    },
     "flake-utils": {
       "inputs": {
         "systems": "systems"
@@ -241,38 +225,18 @@
         "type": "github"
       }
     },
-    "nixos-wsl": {
-      "inputs": {
-        "flake-compat": "flake-compat",
-        "nixpkgs": "nixpkgs"
-      },
-      "locked": {
-        "lastModified": 1765841014,
-        "narHash": "sha256-55V0AJ36V5Egh4kMhWtDh117eE3GOjwq5LhwxDn9eHg=",
-        "owner": "nix-community",
-        "repo": "NixOS-WSL",
-        "rev": "be4af8042e7a61fa12fda58fe9a3b3babdefe17b",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nix-community",
-        "ref": "main",
-        "repo": "NixOS-WSL",
-        "type": "github"
-      }
-    },
     "nixpkgs": {
       "locked": {
-        "lastModified": 1765472234,
+        "lastModified": 1767480499,
-        "narHash": "sha256-9VvC20PJPsleGMewwcWYKGzDIyjckEz8uWmT0vCDYK0=",
+        "narHash": "sha256-8IQQUorUGiSmFaPnLSo2+T+rjHtiNWc+OAzeHck7N48=",
-        "owner": "NixOS",
+        "owner": "nixos",
         "repo": "nixpkgs",
-        "rev": "2fbfb1d73d239d2402a8fe03963e37aab15abe8b",
+        "rev": "30a3c519afcf3f99e2c6df3b359aec5692054d92",
         "type": "github"
       },
       "original": {
-        "owner": "NixOS",
+        "owner": "nixos",
-        "ref": "nixos-unstable",
+        "ref": "nixos-25.11",
         "repo": "nixpkgs",
         "type": "github"
       }
@@ -293,22 +257,6 @@
         "type": "github"
       }
     },
-    "nixpkgs_2": {
-      "locked": {
-        "lastModified": 1767480499,
-        "narHash": "sha256-8IQQUorUGiSmFaPnLSo2+T+rjHtiNWc+OAzeHck7N48=",
-        "owner": "nixos",
-        "repo": "nixpkgs",
-        "rev": "30a3c519afcf3f99e2c6df3b359aec5692054d92",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nixos",
-        "ref": "nixos-25.11",
-        "repo": "nixpkgs",
-        "type": "github"
-      }
-    },
     "plasma-manager": {
       "inputs": {
         "home-manager": [
@@ -364,8 +312,7 @@
         "jovian": "jovian",
         "nix-darwin": "nix-darwin",
         "nix-doom-emacs-unstraightened": "nix-doom-emacs-unstraightened",
-        "nixos-wsl": "nixos-wsl",
+        "nixpkgs": "nixpkgs",
-        "nixpkgs": "nixpkgs_2",
         "nixpkgs-unstable": "nixpkgs-unstable",
         "plasma-manager": "plasma-manager",
         "plasma-manager-unstable": "plasma-manager-unstable"

flake.nix

@@ -4,8 +4,7 @@
   inputs = {
     nixpkgs.url = "github:nixos/nixpkgs/nixos-25.11";
     nixpkgs-unstable.url = "github:nixos/nixpkgs/nixos-unstable";
-    nixos-wsl.url = "github:nix-community/NixOS-WSL/main";
+
-    
     nix-darwin = {
       url = "github:nix-darwin/nix-darwin/nix-darwin-25.11";
       inputs.nixpkgs.follows = "nixpkgs";
@@ -55,7 +54,7 @@
     };
   };
 
-  outputs = { self, nixpkgs, nixpkgs-unstable, nixos-wsl, ... } @ inputs: let
+  outputs = { self, nixpkgs, nixpkgs-unstable, ... } @ inputs: let
     # Shared overlay function to reduce duplication across module sets
     # Parameters:
     #   unstableOverlays: Additional overlays to apply when importing nixpkgs-unstable
@@ -84,6 +83,7 @@
       };
     };
 
+
     nixosModules = [
       ./roles
       inputs.home-manager.nixosModules.home-manager
@@ -157,24 +157,10 @@
       ];
     };
 
-    nixosConfigurations.wixos = nixpkgs.lib.nixosSystem rec {
-      system = "x86_64-linux";
-      modules = nixosModules ++ [
-        nixos-wsl.nixosModules.default
-        ./machines/wixos/configuration.nix
-        inputs.home-manager.nixosModules.home-manager
-        {
-          home-manager.users.johno = import ./home/home-desktop.nix;
-          home-manager.extraSpecialArgs = { inherit system; };
-        }
-      ];
-    };
-
     nixosConfigurations.zix790prors = nixpkgs.lib.nixosSystem rec {
       system = "x86_64-linux";
       modules = nixosModules ++ [
         ./machines/zix790prors/configuration.nix
-        inputs.home-manager.nixosModules.home-manager
         {
           home-manager.users.johno = import ./home/home-desktop.nix;
           home-manager.extraSpecialArgs = { inherit system; };

home/roles/communication/default.nix

@@ -4,6 +4,7 @@ with lib;
 
 let
   cfg = config.home.roles.communication;
+  isLinux = pkgs.stdenv.isLinux;
 in
 {
   options.home.roles.communication = {
@@ -12,14 +13,14 @@ in
 
   config = mkIf cfg.enable {
     home.packages = [
-      # Communication apps
+      # For logging back into google chat (cross-platform)
+      globalInputs.google-cookie-retrieval.packages.${system}.default
+    ] ++ optionals isLinux [
+      # Linux-only communication apps (Electron apps don't build on Darwin)
       pkgs.element-desktop
       # Re-enabled in 25.11 after security issues were resolved
       pkgs.fluffychat
       pkgs.nextcloud-talk-desktop
-      
-      # For logging back into google chat
-      globalInputs.google-cookie-retrieval.packages.${system}.default
     ];
   };
 }

home/roles/desktop/default.nix

@@ -4,6 +4,7 @@ with lib;
 
 let
   cfg = config.home.roles.desktop;
+  isLinux = pkgs.stdenv.isLinux;
 in
 {
   options.home.roles.desktop = {
@@ -12,61 +13,63 @@ in
 
   config = mkIf cfg.enable {
     home.packages = with pkgs; [
-      # Desktop applications
+      # Cross-platform desktop applications
       bitwarden-desktop
-      dunst
       keepassxc
+      xdg-utils # XDG utilities for opening files/URLs with default applications
+    ] ++ optionals isLinux [
+      # Linux-only desktop applications
+      dunst
       unstable.ghostty
-      
+
-      # Desktop utilities
+      # Linux-only desktop utilities
       feh # Image viewer and wallpaper setter for X11
       rofi # Application launcher for X11
       solaar # Logitech management software
       waybar
       wofi # Application launcher for Wayland
-      xdg-utils # XDG utilities for opening files/URLs with default applications
+
-      
+      # Linux-only system utilities with GUI components
-      # System utilities with GUI components
       (snapcast.override { pulseaudioSupport = true; })
-      
+
-      # KDE tiling window management
+      # KDE tiling window management (Linux-only)
       kdePackages.krohnkite  # Dynamic tiling extension for KWin 6
-      
+
-      # KDE PIM applications for email, calendar, and contacts
+      # KDE PIM applications for email, calendar, and contacts (Linux-only)
       kdePackages.kmail
       kdePackages.kmail-account-wizard
       kdePackages.kmailtransport
       kdePackages.korganizer
       kdePackages.kaddressbook
       kdePackages.kontact
-      
+
-      # KDE System components needed for proper integration
+      # KDE System components needed for proper integration (Linux-only)
       kdePackages.kded
       kdePackages.systemsettings
       kdePackages.kmenuedit
-      
+
-      # Desktop menu support
+      # Desktop menu support (Linux-only)
       kdePackages.plasma-desktop # Contains applications.menu
-      
+
-      # KDE Online Accounts support
+      # KDE Online Accounts support (Linux-only)
       kdePackages.kaccounts-integration
       kdePackages.kaccounts-providers
       kdePackages.signond
-      
+
-      # KDE Mapping
+      # KDE Mapping (Linux-only)
       kdePackages.marble  # Virtual globe and world atlas
-      
+
-      # KDE Productivity
+      # KDE Productivity (Linux-only)
       kdePackages.kate        # Advanced text editor with syntax highlighting
       kdePackages.okular      # Universal document viewer (PDF, ePub, etc.)
       kdePackages.spectacle   # Screenshot capture utility
       kdePackages.filelight   # Visual disk usage analyzer
-      
+
-      # KDE Multimedia
+      # KDE Multimedia (Linux-only)
       kdePackages.gwenview    # Image viewer and basic editor
       kdePackages.elisa       # Music player
-      
+
-      # KDE System Utilities  
+      # KDE System Utilities (Linux-only)
       kdePackages.ark         # Archive manager (zip, tar, 7z, etc.)
       kdePackages.yakuake     # Drop-down terminal emulator
     ];
@@ -77,61 +80,66 @@ in
 
     programs.spotify-player.enable = true;
 
-    services.gnome-keyring = {
+    # Linux-only: GNOME keyring service
+    services.gnome-keyring = mkIf isLinux {
       enable = true;
     };
 
-    # rbw vault unlock on login and resume from suspend
+    # Linux-only: systemd user services for rbw vault unlock
-    systemd.user.services.rbw-unlock-on-login = {
+    systemd.user.services = mkIf isLinux {
-      Unit = {
+      # rbw vault unlock on login
-        Description = "Unlock rbw vault at login";
+      rbw-unlock-on-login = {
-        After = [ "graphical-session.target" ];
+        Unit = {
+          Description = "Unlock rbw vault at login";
+          After = [ "graphical-session.target" ];
+        };
+        Service = {
+          Type = "oneshot";
+          ExecStart = "${pkgs.rbw}/bin/rbw unlock";
+          Environment = "RBW_AGENT=${pkgs.rbw}/bin/rbw-agent";
+          # KillMode = "process" prevents systemd from killing the rbw-agent daemon
+          # when this oneshot service completes. The agent is spawned by rbw unlock
+          # and needs to persist after the service exits.
+          KillMode = "process";
+        };
+        Install = {
+          WantedBy = [ "graphical-session.target" ];
+        };
       };
-      Service = {
+
-        Type = "oneshot";
+      # rbw vault unlock on resume from suspend
-        ExecStart = "${pkgs.rbw}/bin/rbw unlock";
+      rbw-unlock-on-resume = {
-        Environment = "RBW_AGENT=${pkgs.rbw}/bin/rbw-agent";
+        Unit = {
-        # KillMode = "process" prevents systemd from killing the rbw-agent daemon
+          Description = "Unlock rbw vault after resume from suspend";
-        # when this oneshot service completes. The agent is spawned by rbw unlock
+          After = [ "suspend.target" ];
-        # and needs to persist after the service exits.
+        };
-        KillMode = "process";
+        Service = {
-      };
+          Type = "oneshot";
-      Install = {
+          ExecStart = "${pkgs.rbw}/bin/rbw unlock";
-        WantedBy = [ "graphical-session.target" ];
+          Environment = "RBW_AGENT=${pkgs.rbw}/bin/rbw-agent";
+          # KillMode = "process" prevents systemd from killing the rbw-agent daemon
+          # when this oneshot service completes. The agent is spawned by rbw unlock
+          # and needs to persist after the service exits.
+          KillMode = "process";
+        };
+        Install = {
+          WantedBy = [ "suspend.target" ];
+        };
       };
     };
 
-    systemd.user.services.rbw-unlock-on-resume = {
+    # Linux-only: KDE environment variables for proper integration
-      Unit = {
+    home.sessionVariables = mkIf isLinux {
-        Description = "Unlock rbw vault after resume from suspend";
-        After = [ "suspend.target" ];
-      };
-      Service = {
-        Type = "oneshot";
-        ExecStart = "${pkgs.rbw}/bin/rbw unlock";
-        Environment = "RBW_AGENT=${pkgs.rbw}/bin/rbw-agent";
-        # KillMode = "process" prevents systemd from killing the rbw-agent daemon
-        # when this oneshot service completes. The agent is spawned by rbw unlock
-        # and needs to persist after the service exits.
-        KillMode = "process";
-      };
-      Install = {
-        WantedBy = [ "suspend.target" ];
-      };
-    };
-
-    # KDE environment variables for proper integration
-    home.sessionVariables = {
       QT_QPA_PLATFORMTHEME = "kde";
       KDE_SESSION_VERSION = "6";
     };
 
     xdg = {
       enable = true;
-      
+
       # Ensure desktop files are made available for discovery
       desktopEntries = {};  # This creates the desktop files directory structure
-      
+
       mimeApps = {
         enable = true;
         associations.added = {
@@ -141,13 +149,14 @@ in
           "x-scheme-handler/https" = "firefox.desktop";
         };
         defaultApplications = {
-          # Web browsers
+          # Web browsers (cross-platform)
           "text/html" = "firefox.desktop";
           "x-scheme-handler/http" = "firefox.desktop";
           "x-scheme-handler/https" = "firefox.desktop";
           "x-scheme-handler/about" = "firefox.desktop";
           "x-scheme-handler/unknown" = "firefox.desktop";
-          
+        } // optionalAttrs isLinux {
+          # Linux-only: KDE application associations
           # Documents
           "application/pdf" = "okular.desktop";
           "text/plain" = "kate.desktop";
@@ -155,7 +164,7 @@ in
           "text/x-c" = "kate.desktop";
           "text/x-python" = "kate.desktop";
           "application/x-shellscript" = "kate.desktop";
-          
+
           # Images
           "image/png" = "gwenview.desktop";
           "image/jpeg" = "gwenview.desktop";
@@ -164,25 +173,25 @@ in
           "image/bmp" = "gwenview.desktop";
           "image/tiff" = "gwenview.desktop";
           "image/webp" = "gwenview.desktop";
-          
+
           # Archives
           "application/zip" = "ark.desktop";
           "application/x-tar" = "ark.desktop";
           "application/x-compressed-tar" = "ark.desktop";
           "application/x-7z-compressed" = "ark.desktop";
           "application/x-rar" = "ark.desktop";
-          
+
           # Audio
           "audio/mpeg" = "elisa.desktop";
           "audio/mp4" = "elisa.desktop";
           "audio/flac" = "elisa.desktop";
           "audio/ogg" = "elisa.desktop";
           "audio/wav" = "elisa.desktop";
-          
+
           # Email
           "message/rfc822" = "kmail.desktop";
           "x-scheme-handler/mailto" = "kmail.desktop";
-          
+
           # Calendar
           "text/calendar" = "korganizer.desktop";
           "application/x-vnd.akonadi.calendar.event" = "korganizer.desktop";
@@ -190,9 +199,11 @@ in
       };
     };
 
-    # Fix for KDE applications.menu file issue on Plasma 6
+    # Linux-only: Fix for KDE applications.menu file issue on Plasma 6
     # KDE still looks for applications.menu but Plasma 6 renamed it to plasma-applications.menu
-    xdg.configFile."menus/applications.menu".source = "${pkgs.kdePackages.plasma-workspace}/etc/xdg/menus/plasma-applications.menu";
+    xdg.configFile."menus/applications.menu" = mkIf isLinux {
+      source = "${pkgs.kdePackages.plasma-workspace}/etc/xdg/menus/plasma-applications.menu";
+    };
 
     # Note: modules must be imported at top-level home config
   };

home/roles/development/skills/parallel_beads.md

@@ -42,7 +42,46 @@ AskUserQuestion with:
 - options from filtered bd ready output
 ```
 
-## Phase 2: Parallel Implementation
+## Phase 2: Worktree Setup
+
+Before launching implementation subagents, create worktrees for all selected beads:
+
+1. **Get repository name**:
+   ```bash
+   REPO_NAME=$(git remote get-url origin | sed 's|.*/||' | sed 's/\.git$//')
+   ```
+
+2. **For each selected bead**, create its worktree:
+   ```bash
+   BEAD_ID="[bead-id]"
+   # Check if worktree already exists
+   if [ -d "$HOME/wt/${REPO_NAME}/${BEAD_ID}" ]; then
+     echo "Worktree already exists: ~/wt/${REPO_NAME}/${BEAD_ID}"
+     # Ask user: remove and recreate, or skip this bead?
+   else
+     git worktree add -b "bead/${BEAD_ID}" "$HOME/wt/${REPO_NAME}/${BEAD_ID}"
+   fi
+   ```
+
+3. **Track created worktrees**:
+   Maintain a list of (bead_id, worktree_path) pairs for use in subagent instructions.
+
+4. **Report status**:
+   ```
+   Created worktrees:
+   - nixos-configs-abc → ~/wt/nixos-configs/nixos-configs-abc (branch: bead/nixos-configs-abc)
+   - nixos-configs-xyz → ~/wt/nixos-configs/nixos-configs-xyz (branch: bead/nixos-configs-xyz)
+
+   Skipped (existing worktree):
+   - nixos-configs-123 → Ask user for resolution
+   ```
+
+**Note**: If a worktree or branch already exists, ask the user before proceeding:
+- Remove existing worktree and branch, then recreate
+- Skip this bead
+- Use existing worktree as-is (risky - branch may have diverged)
+
+## Phase 3: Parallel Implementation
 
 For each selected bead, launch a subagent using the Task tool. All subagents should be launched in parallel (single message with multiple Task tool calls).
 
@@ -53,16 +92,43 @@ Each implementation subagent should receive these instructions:
 ```
 Work on bead [BEAD_ID]: [BEAD_TITLE]
 
-1. **Create worktree**:
+Worktree path: [WORKTREE_PATH]
-   - Branch name: `bead/[BEAD_ID]`
-   - Worktree path: `~/wt/[REPO_NAME]/[BEAD_ID]`
-   - Command: `git worktree add -b bead/[BEAD_ID] ~/wt/[REPO_NAME]/[BEAD_ID]`
 
-2. **Review the bead requirements**:
+## CRITICAL: Branch Verification (MUST DO FIRST)
+
+1. **Navigate to worktree**:
+   ```bash
+   cd [WORKTREE_PATH]
+   ```
+
+2. **Verify branch** (MANDATORY before ANY modifications):
+   ```bash
+   CURRENT_BRANCH=$(git branch --show-current)
+   echo "Current branch: $CURRENT_BRANCH"
+   pwd
+   ```
+
+   **ABORT CONDITIONS** - If ANY of these are true, STOP IMMEDIATELY:
+   - Branch is `main` or `master`
+   - Branch does not match `bead/[BEAD_ID]`
+
+   If you detect any abort condition:
+   ```
+   ABORTING: Branch verification failed.
+   Expected branch: bead/[BEAD_ID]
+   Actual branch: [CURRENT_BRANCH]
+   Working directory: [pwd output]
+
+   DO NOT PROCEED. Report this error to the orchestrator.
+   ```
+
+## After Verification Passes
+
+3. **Review the bead requirements**:
    - Run `bd show [BEAD_ID]` to understand the acceptance criteria
    - Note any external issue references (GitHub issues, Linear tickets, etc.)
 
-3. **Extract validation criteria**:
+4. **Extract validation criteria**:
    - Check for a plan: `thoughts/beads-[BEAD_ID]/plan.md`
    - If plan exists:
      - Read the plan and find the "Automated Verification" section
@@ -74,12 +140,12 @@ Work on bead [BEAD_ID]: [BEAD_TITLE]
      - Check if `package.json` exists → try `npm test`
      - If none found, note "No validation criteria found"
 
-4. **Implement the changes**:
+5. **Implement the changes**:
    - Work in the worktree directory
    - Complete all acceptance criteria listed in the bead
 
    After implementation, run validation:
-   - Execute each validation command from step 3
+   - Execute each validation command from step 4
    - Track results in this format:
      ```
      VALIDATION_RESULTS:
@@ -91,12 +157,12 @@ Work on bead [BEAD_ID]: [BEAD_TITLE]
      - Continue with PR creation (don't block)
      - Document failures in bead notes: `bd update [BEAD_ID] --notes="Validation failures: [list]"`
 
-5. **Commit and push**:
+6. **Commit and push**:
    - Stage all changes: `git add -A`
    - Create a descriptive commit message
    - Push the branch: `git push -u origin bead/[BEAD_ID]`
 
-6. **Create a PR**:
+7. **Create a PR**:
    - Detect hosting provider from origin URL: `git remote get-url origin`
    - If URL contains `github.com`, use `gh`; otherwise use `tea` (Gitea/Forgejo)
    - PR title: "[BEAD_ID] [BEAD_TITLE]"
@@ -156,13 +222,13 @@ Work on bead [BEAD_ID]: [BEAD_TITLE]
      | nix flake check | SKIP | command not found |"
      ```
 
-7. **Update bead status**:
+8. **Update bead status**:
    - Mark the bead as "in_review": `bd update [BEAD_ID] --status=in_review`
    - Add the PR URL to the bead notes: `bd update [BEAD_ID] --notes="$(bd show [BEAD_ID] --json | jq -r '.notes')
 
 PR: [PR_URL]"`
 
-8. **Report results**:
+9. **Report results**:
    - Return:
      - PR URL
      - Bead ID
@@ -175,15 +241,24 @@ PR: [PR_URL]"`
 
 ### Launching Subagents
 
+For each bead, substitute into the template:
+- `[BEAD_ID]` - the bead ID
+- `[BEAD_TITLE]` - the bead title
+- `[WORKTREE_PATH]` - the worktree path created in Phase 2
+
 Use `subagent_type: "general-purpose"` for implementation subagents. Launch all selected beads' subagents in a single message for parallel execution:
 
 ```
 <Task calls for each selected bead - all in one message>
 ```
 
+**Important**: The worktree paths were created in Phase 2. Use the exact paths that were created, e.g.:
+- `~/wt/nixos-configs/nixos-configs-abc`
+- `~/wt/nixos-configs/nixos-configs-xyz`
+
 Collect results from all subagents before proceeding.
 
-## Phase 3: Parallel Review
+## Phase 4: Parallel Review
 
 After all implementation subagents complete, launch review subagents for each PR.
 
@@ -218,7 +293,7 @@ Review PR for bead [BEAD_ID]
 
 Launch all review subagents in parallel.
 
-## Phase 4: Cleanup and Summary
+## Phase 5: Cleanup and Summary
 
 After reviews complete:
 
@@ -264,9 +339,21 @@ Example output:
 
 ## Error Handling
 
+- **Worktree creation failures** (Phase 2):
+  - If `git worktree add` fails (branch exists, path exists), prompt user:
+    - Remove existing and retry
+    - Skip this bead
+    - Use existing (with warning about potential divergence)
+  - Do NOT proceed to subagent launch until worktree is confirmed
+
+- **Branch verification failures** (subagent reports):
+  - If subagent reports it's on `main` or `master`, do NOT retry
+  - Mark bead as failed with reason "Branch verification failed"
+  - Continue with other beads but flag this as a critical issue
+  - Investigation required: the worktree may have been corrupted or not created properly
+
 - **Subagent failures**: If a subagent fails or times out, note it in the summary but continue with other beads
 - **PR creation failures**: Report the error but continue with reviews of successful PRs
-- **Worktree conflicts**: If a worktree already exists, ask the user if they want to remove it or skip that bead
 
 ## Resource Limits
 

home/roles/development/skills/reconcile_beads.md

@@ -4,12 +4,13 @@ description: Reconcile beads with merged PRs and close completed beads
 
 # Reconcile Beads Workflow
 
-This skill reconciles beads that are in `in_review` status with their corresponding PRs. If a PR has been merged, the bead is closed.
+This skill reconciles beads that are in `in_review` status with their corresponding PRs. If a PR has been merged, the bead is closed and any linked Gitea issue is also closed.
 
 ## Prerequisites
 
 - Custom status `in_review` must be configured: `bd config set status.custom "in_review"`
 - Beads in `in_review` status should have a PR URL in their notes
+- `tea` CLI must be configured for closing Gitea issues
 
 ## Workflow
 
@@ -52,6 +53,34 @@ If the PR is merged:
 bd close [BEAD_ID] --reason="PR merged: [PR_URL]"
 ```
 
+### Step 3.1: Close corresponding Gitea issue (if any)
+
+After closing a bead, check if it has a linked Gitea issue:
+
+1. **Check for Gitea issue URL in bead notes**:
+   Look for the pattern `Gitea issue: <URL>` in the notes. Extract the URL.
+
+2. **Extract issue number from URL**:
+   ```bash
+   # Example: https://git.johnogle.info/johno/nixos-configs/issues/16 -> 16
+   echo "$GITEA_URL" | grep -oP '/issues/\K\d+'
+   ```
+
+3. **Close the Gitea issue**:
+   ```bash
+   tea issues close [ISSUE_NUMBER]
+   ```
+
+4. **Handle errors gracefully**:
+   - If issue is already closed: Log warning, continue
+   - If issue not found: Log warning, continue
+   - If `tea` fails: Log error, continue with other beads
+
+   Example warning output:
+   ```
+   Warning: Could not close Gitea issue #16: issue already closed
+   ```
+
 ### Step 4: Report summary
 
 Present results:
@@ -60,10 +89,17 @@ Present results:
 ## Beads Reconciliation Summary
 
 ### Closed (PR Merged)
-| Bead | PR | Title |
+| Bead | PR | Gitea Issue | Title |
-|------|-----|-------|
+|------|-----|-------------|-------|
-| beads-abc | #123 | Feature X |
+| beads-abc | #123 | #16 closed | Feature X |
-| beads-xyz | #456 | Bug fix Y |
+| beads-xyz | #456 | (none) | Bug fix Y |
+
+### Gitea Issues Closed
+| Issue | Bead | Status |
+|-------|------|--------|
+| #16 | beads-abc | Closed successfully |
+| #17 | beads-def | Already closed (skipped) |
+| #99 | beads-ghi | Error: issue not found |
 
 ### Still in Review
 | Bead | PR | Status | Title |
@@ -80,9 +116,14 @@ Present results:
 - **Missing PR URL**: Skip the bead and report it
 - **PR not found**: Report the error but continue with other beads
 - **API errors**: Report and continue
+- **Gitea issue already closed**: Log warning, continue (not an error)
+- **Gitea issue not found**: Log warning, continue (issue may have been deleted)
+- **No Gitea issue linked**: Normal case, no action needed
+- **tea command fails**: Log error with output, continue with other beads
 
 ## Notes
 
 - This skill complements `/parallel_beads` which sets beads to `in_review` status
 - Run this skill periodically or after merging PRs to keep beads in sync
 - Beads with closed (but not merged) PRs are not automatically closed - they may need rework
+- Gitea issues are only closed for beads that have a `Gitea issue: <URL>` in their notes

home/roles/emacs/doom/config.el

@@ -225,11 +225,16 @@
         mu4e-headers-time-format "%H:%M")
 
   ;; Sending mail via msmtp
-  (setq message-send-mail-function 'message-send-mail-with-sendmail
+  ;; NOTE: message-sendmail-f-is-evil and --read-envelope-from are required
-        sendmail-program (executable-find "msmtp")
+  ;; to prevent msmtp from stripping the email body when processing headers.
-        message-sendmail-envelope-from 'header
+  ;; Without these, multipart messages (especially from org-msg) may arrive
-        mail-envelope-from 'header
+  ;; with empty bodies.
-        mail-specify-envelope-from t))
+  (setq sendmail-program (executable-find "msmtp")
+        send-mail-function #'message-send-mail-with-sendmail
+        message-send-mail-function #'message-send-mail-with-sendmail
+        message-sendmail-f-is-evil t
+        message-sendmail-extra-arguments '("--read-envelope-from")
+        message-sendmail-envelope-from 'header))
 
 ;; Whenever you reconfigure a package, make sure to wrap your config in an
 ;; `after!' block, otherwise Doom's defaults may override your settings. E.g.

home/roles/email/default.nix

@@ -4,6 +4,7 @@ with lib;
 
 let
   cfg = config.home.roles.email;
+  isLinux = pkgs.stdenv.isLinux;
 in
 {
   options.home.roles.email = {
@@ -89,34 +90,38 @@ in
       account default : proton
     '';
 
-    # Systemd service for mail sync
+    # Linux-only: Systemd service for mail sync (Darwin uses launchd instead)
-    systemd.user.services.mbsync = {
+    systemd.user.services = mkIf isLinux {
-      Unit = {
+      mbsync = {
-        Description = "Mailbox synchronization service";
+        Unit = {
-        After = [ "network-online.target" ];
+          Description = "Mailbox synchronization service";
-        Wants = [ "network-online.target" ];
+          After = [ "network-online.target" ];
-      };
+          Wants = [ "network-online.target" ];
-      Service = {
+        };
-        Type = "oneshot";
+        Service = {
-        ExecStart = "${pkgs.bash}/bin/bash -c 'mkdir -p ~/Mail && ${pkgs.isync}/bin/mbsync -a && (${pkgs.mu}/bin/mu info >/dev/null 2>&1 || ${pkgs.mu}/bin/mu init --maildir ~/Mail --personal-address=john@ogle.fyi) && ${pkgs.mu}/bin/mu index'";
+          Type = "oneshot";
-        Environment = "PATH=${pkgs.rbw}/bin:${pkgs.coreutils}/bin";
+          ExecStart = "${pkgs.bash}/bin/bash -c 'mkdir -p ~/Mail && ${pkgs.isync}/bin/mbsync -a && (${pkgs.mu}/bin/mu info >/dev/null 2>&1 || ${pkgs.mu}/bin/mu init --maildir ~/Mail --personal-address=john@ogle.fyi) && ${pkgs.mu}/bin/mu index'";
-        StandardOutput = "journal";
+          Environment = "PATH=${pkgs.rbw}/bin:${pkgs.coreutils}/bin";
-        StandardError = "journal";
+          StandardOutput = "journal";
+          StandardError = "journal";
+        };
       };
     };
 
-    # Systemd timer for automatic sync
+    # Linux-only: Systemd timer for automatic sync
-    systemd.user.timers.mbsync = {
+    systemd.user.timers = mkIf isLinux {
-      Unit = {
+      mbsync = {
-        Description = "Mailbox synchronization timer";
+        Unit = {
-      };
+          Description = "Mailbox synchronization timer";
-      Timer = {
+        };
-        OnBootSec = "2min";
+        Timer = {
-        OnUnitActiveSec = "5min";
+          OnBootSec = "2min";
-        Unit = "mbsync.service";
+          OnUnitActiveSec = "5min";
-      };
+          Unit = "mbsync.service";
-      Install = {
+        };
-        WantedBy = [ "timers.target" ];
+        Install = {
+          WantedBy = [ "timers.target" ];
+        };
       };
     };
   };

home/roles/kdeconnect/default.nix

@@ -4,13 +4,15 @@ with lib;
 
 let
   cfg = config.home.roles.kdeconnect;
+  isLinux = pkgs.stdenv.isLinux;
 in
 {
   options.home.roles.kdeconnect = {
     enable = mkEnableOption "Enable KDE Connect for device integration";
   };
 
-  config = mkIf cfg.enable {
+  # KDE Connect services are Linux-only (requires D-Bus and systemd)
+  config = mkIf (cfg.enable && isLinux) {
     services.kdeconnect = {
       enable = true;
       indicator = true;

home/roles/sync/default.nix

@@ -4,6 +4,7 @@ with lib;
 
 let
   cfg = config.home.roles.sync;
+  isLinux = pkgs.stdenv.isLinux;
 in
 {
   options.home.roles.sync = {
@@ -11,9 +12,10 @@ in
   };
 
   config = mkIf cfg.enable {
-    home.packages = with pkgs; [
+    # Linux-only: syncthingtray requires system tray support
+    home.packages = optionals isLinux (with pkgs; [
       syncthingtray
-    ];
+    ]);
 
     services.syncthing = {
       enable = true;

machines/wixos/configuration.nix

@@ -1,56 +0,0 @@
-# Edit this configuration file to define what should be installed on
-# your system. Help is available in the configuration.nix(5) man page, on
-# https://search.nixos.org/options and in the NixOS manual (`nixos-help`).
-
-# NixOS-WSL specific options are documented on the NixOS-WSL repository:
-# https://github.com/nix-community/NixOS-WSL
-
-{ config, lib, pkgs, ... }:
-
-{
-  imports = [
-  ];
-
-  roles = {
-    audio.enable = true;
-    desktop = {
-      enable = true;
-      wayland = true;
-    };
-    nvidia = {
-      enable = true;
-      package = "latest";
-      graphics.extraPackages = with pkgs; [
-        mesa
-        libvdpau-va-gl
-        libva-vdpau-driver
-      ];
-    };
-    users.enable = true;
-  };
-
-  networking.hostName = "wixos";
-
-  wsl.enable = true;
-  wsl.defaultUser = "johno";
-  wsl.startMenuLaunchers = true;
-  wsl.useWindowsDriver = true;
-  wsl.wslConf.network.hostname = "wixos";
-  wsl.wslConf.user.default = "johno";
-
-  # WSL-specific environment variables for graphics
-  environment.sessionVariables = {
-    LD_LIBRARY_PATH = [
-      "/usr/lib/wsl/lib"
-      "/run/opengl-driver/lib"
-    ];
-  };
-
-  # This value determines the NixOS release from which the default
-  # settings for stateful data, like file locations and database versions
-  # on your system were taken. It's perfectly fine and recommended to leave
-  # this value at the release version of the first install of this system.
-  # Before changing this value read the documentation for this option
-  # (e.g. man configuration.nix or on https://nixos.org/nixos/options.html).
-  system.stateVersion = "24.05"; # Did you read the comment?
-}

roles/audio/default.nix

@@ -21,6 +21,8 @@ in
 
       services.pipewire = {
         enable = true;
+        alsa.enable = true;
+        alsa.support32Bit = true;
         pulse.enable = true;
       };
 

scripts/rotate-wallpaper.sh

@@ -1,6 +1,30 @@
 #!/usr/bin/env bash
 set -euo pipefail
 
+# Parse arguments
+while [[ $# -gt 0 ]]; do
+    case $1 in
+        --help|-h)
+            echo "Usage: $0 [OPTIONS]"
+            echo ""
+            echo "Rotate to the next wallpaper in the configured list."
+            echo ""
+            echo "This script increments the currentIndex in home/wallpapers/default.nix,"
+            echo "cycling through available wallpapers. Rebuild your system to apply"
+            echo "the new wallpaper."
+            echo ""
+            echo "Options:"
+            echo "  --help, -h    Show this help message"
+            exit 0
+            ;;
+        *)
+            echo "Unknown option: $1"
+            echo "Use --help for usage information"
+            exit 1
+            ;;
+    esac
+done
+
 # Colors for output
 RED='\033[0;31m'
 GREEN='\033[0;32m'

scripts/update-doomemacs.sh

@@ -1,6 +1,30 @@
 #!/usr/bin/env bash
 set -euo pipefail
 
+# Parse arguments
+while [[ $# -gt 0 ]]; do
+    case $1 in
+        --help|-h)
+            echo "Usage: $0 [OPTIONS]"
+            echo ""
+            echo "Update Doom Emacs to the latest commit from the doomemacs repository."
+            echo ""
+            echo "This script fetches the latest commit SHA from the default branch,"
+            echo "updates the rev and sha256 in home/roles/emacs/default.nix, and"
+            echo "prepares the configuration for a system rebuild."
+            echo ""
+            echo "Options:"
+            echo "  --help, -h    Show this help message"
+            exit 0
+            ;;
+        *)
+            echo "Unknown option: $1"
+            echo "Use --help for usage information"
+            exit 1
+            ;;
+    esac
+done
+
 # Colors for output
 RED='\033[0;31m'
 GREEN='\033[0;32m'

scripts/upgrade.sh

@@ -1,6 +1,35 @@
 #!/usr/bin/env bash
 set -euo pipefail
 
+# Parse arguments
+while [[ $# -gt 0 ]]; do
+    case $1 in
+        --help|-h)
+            echo "Usage: $0 [OPTIONS]"
+            echo ""
+            echo "Perform a major upgrade of the NixOS configuration."
+            echo ""
+            echo "This script runs the following steps:"
+            echo "  1. Update all flake inputs (nix flake update)"
+            echo "  2. Update Doom Emacs to the latest commit"
+            echo "  3. Update Claude Code to the latest version"
+            echo "  4. Rotate to the next wallpaper"
+            echo ""
+            echo "After completion, review changes with 'git diff' and rebuild"
+            echo "your system with 'sudo nixos-rebuild switch --flake .'"
+            echo ""
+            echo "Options:"
+            echo "  --help, -h    Show this help message"
+            exit 0
+            ;;
+        *)
+            echo "Unknown option: $1"
+            echo "Use --help for usage information"
+            exit 1
+            ;;
+    esac
+done
+
 # Colors for output
 RED='\033[0;31m'
 GREEN='\033[0;32m'