feat: Move bootstrap/build-liveusb scripts to flake apps

- Move bootstrap.sh to scripts/ and add as flake app
- Move build-liveusb.sh to scripts/ and add as flake app
- Update usage comments to show nix run commands
- Improve build-liveusb.sh with better error handling (set -euo pipefail)
- Remove emojis from output messages for cleaner log output

Scripts can now be run consistently via:
  nix run .#bootstrap -- <hostname>
  nix run .#build-liveusb

Implements bead: nixos-configs-bli

.gitignore

@@ -1,2 +1,3 @@
 result
 thoughts
+.beads

build-liveusb.sh

@@ -1,19 +0,0 @@
-#!/usr/bin/env bash
-
-# Build Live USB ISO from flake configuration
-# Creates an uncompressed ISO suitable for Ventoy and other USB boot tools
-
-set -e
-
-echo "Building Live USB ISO..."
-nix build .#nixosConfigurations.live-usb.config.system.build.isoImage --show-trace
-
-if [ -f "./result/iso/"*.iso ]; then
-    iso_file=$(ls ./result/iso/*.iso)
-    echo "✅ Build complete!"
-    echo "📁 ISO location: $iso_file"
-    echo "💾 Ready for Ventoy or dd to USB"
-else
-    echo "❌ Build failed - no ISO file found"
-    exit 1
-fi

flake.nix

@@ -230,7 +230,11 @@
       system = "x86_64-linux";
       modules = nixosModules ++ [
         ./machines/john-endesktop/configuration.nix
-        # Minimal server - no home-manager needed
+        inputs.home-manager.nixosModules.home-manager
+        {
+          home-manager.users.johno = import ./home/home-server.nix;
+          home-manager.extraSpecialArgs = { inherit system; };
+        }
       ];
     };
 
@@ -271,6 +275,16 @@
           export PATH="${pkgs.lib.makeBinPath commonDeps}:$PATH"
           ${builtins.readFile ./scripts/upgrade.sh}
         '';
+
+        bootstrap = pkgs.writeShellScriptBin "bootstrap" ''
+          export PATH="${pkgs.lib.makeBinPath commonDeps}:$PATH"
+          ${builtins.readFile ./scripts/bootstrap.sh}
+        '';
+
+        build-liveusb = pkgs.writeShellScriptBin "build-liveusb" ''
+          export PATH="${pkgs.lib.makeBinPath commonDeps}:$PATH"
+          ${builtins.readFile ./scripts/build-liveusb.sh}
+        '';
       in {
         update-doomemacs = {
           type = "app";
@@ -288,6 +302,14 @@
           type = "app";
           program = "${upgrade}/bin/upgrade";
         };
+        bootstrap = {
+          type = "app";
+          program = "${bootstrap}/bin/bootstrap";
+        };
+        build-liveusb = {
+          type = "app";
+          program = "${build-liveusb}/bin/build-liveusb";
+        };
       }
     );
   };

home/home-desktop.nix

@@ -23,6 +23,7 @@
     kubectl.enable = true;
     tmux.enable = true;
     plasma-manager.enable = true;
+    starship.enable = true;
   };
 
   targets.genericLinux.enable = true;

home/home-laptop-compact.nix

@@ -23,6 +23,7 @@
     plasma-manager.enable = true;
     emacs.enable = true;
     i3_sway.enable = true;
+    starship.enable = true;
 
     # Launcher wrappers for excluded/optional packages
     launchers = {

home/home-live-usb.nix

@@ -21,6 +21,7 @@
       prebuiltDoom = true;
     };
     i3_sway.enable = true;
+    starship.enable = true;
     # development.enable = false;  # Not needed for live USB
     # communication.enable = false; # Not needed for live USB
     # office.enable = false;       # Not needed for live USB

home/home-media-center.nix

@@ -20,6 +20,7 @@
     plasma-manager.enable = true;
     emacs.enable = true;
     i3_sway.enable = true;
+    starship.enable = true;
     # office.enable = false;    # Not needed for media center
     # sync.enable = false;      # Shared machine, no personal file sync
   };

home/home-server.nix

@@ -0,0 +1,26 @@
+{ pkgs, globalInputs, system, ... }:
+
+{
+  # Home Manager configuration for servers (minimal with development tools)
+  home.username = "johno";
+  home.homeDirectory = "/home/johno";
+  home.stateVersion = "24.05";
+
+  # Minimal roles for server with development capability
+  home.roles = {
+    base.enable = true;
+    development.enable = true;
+    emacs.enable = true;
+    starship.enable = true;
+    tmux.enable = true;
+  };
+
+  targets.genericLinux.enable = true;
+  home.sessionVariables = {};
+  home.sessionPath = [];
+
+  imports = [
+    ./roles
+    ./roles/base-linux
+  ];
+}

home/roles/default.nix

@@ -19,5 +19,6 @@
     ./sync
     ./tmux
     ./emacs
+    ./starship
   ];
 }

home/roles/development/default.nix

@@ -85,11 +85,25 @@ in
         fi
       done
 
+      # Copy local skills from this repo (with retry for race conditions with running Claude)
+      for file in ${./skills}/*.md; do
+        if [ -f "$file" ]; then
+          filename=$(basename "$file" .md)
+          dest="$HOME/.claude/commands/''${filename}.md"
+          # Remove existing file first, then copy with retry on failure
+          rm -f "$dest" 2>/dev/null || true
+          if ! cp "$file" "$dest" 2>/dev/null; then
+            sleep 0.5
+            cp "$file" "$dest" || echo "Warning: Failed to copy $filename.md to commands"
+          fi
+        fi
+      done
+
       $DRY_RUN_CMD echo "Claude Code humanlayer commands and agents installed successfully${
         if cfg.allowArbitraryClaudeCodeModelSelection
         then " (model specifications preserved)"
         else " (model selection removed)"
-      }"
+      } + local skills"
     '';
 
     # Set up beads Claude Code integration (hooks for SessionStart/PreCompact)

home/roles/development/skills/parallel_beads.md

@@ -0,0 +1,205 @@
+---
+description: Orchestrate parallel bead processing with worktrees, PRs, and reviews
+---
+
+# Parallel Beads Workflow
+
+This skill orchestrates parallel bead processing using subagents. Each bead gets its own worktree, implementation, PR, and review.
+
+## Phase 1: Selection
+
+1. **Get ready beads**: Run `bd ready` to list all beads with no blockers
+2. **Present selection**: Use `AskUserQuestion` with `multiSelect: true` to let the user choose which beads to work on
+   - Include bead ID and title for each option
+   - Allow selection of multiple beads
+
+Example:
+```
+AskUserQuestion with:
+- question: "Which beads do you want to work on in parallel?"
+- multiSelect: true
+- options from bd ready output
+```
+
+## Phase 2: Parallel Implementation
+
+For each selected bead, launch a subagent using the Task tool. All subagents should be launched in parallel (single message with multiple Task tool calls).
+
+### Subagent Instructions Template
+
+Each implementation subagent should receive these instructions:
+
+```
+Work on bead [BEAD_ID]: [BEAD_TITLE]
+
+1. **Create worktree**:
+   - Branch name: `bead/[BEAD_ID]`
+   - Worktree path: `~/wt/[REPO_NAME]/[BEAD_ID]`
+   - Command: `git worktree add -b bead/[BEAD_ID] ~/wt/[REPO_NAME]/[BEAD_ID]`
+
+2. **Review the bead requirements**:
+   - Run `bd show [BEAD_ID]` to understand the acceptance criteria
+   - Note any external issue references (GitHub issues, Linear tickets, etc.)
+
+3. **Implement the changes**:
+   - Work in the worktree directory
+   - Complete all acceptance criteria listed in the bead
+   - Run any relevant tests or checks
+
+4. **Commit and push**:
+   - Stage all changes: `git add -A`
+   - Create a descriptive commit message
+   - Push the branch: `git push -u origin bead/[BEAD_ID]`
+
+5. **Create a PR**:
+   - Detect hosting provider from origin URL: `git remote get-url origin`
+   - If URL contains `github.com`, use `gh`; otherwise use `tea` (Gitea/Forgejo)
+   - PR title: "[BEAD_ID] [BEAD_TITLE]"
+   - PR body must include:
+     - Reference to bead ID: "Implements bead: [BEAD_ID]"
+     - Any external issue references from the bead (e.g., "Closes #123")
+     - Summary of changes
+   - For GitHub (`gh`):
+     ```bash
+     gh pr create --title "[BEAD_ID] [BEAD_TITLE]" --body "$(cat <<'EOF'
+     ## Summary
+     [Brief description of changes]
+
+     ## Bead Reference
+     Implements bead: [BEAD_ID]
+
+     ## External Issues
+     [Any linked issues from the bead]
+
+     ## Changes
+     - [List of changes made]
+     EOF
+     )"
+     ```
+   - For Gitea (`tea`):
+     ```bash
+     tea pr create --head bead/[BEAD_ID] --base main \
+       --title "[BEAD_ID] [BEAD_TITLE]" \
+       --description "## Summary
+     [Brief description of changes]
+
+     ## Bead Reference
+     Implements bead: [BEAD_ID]
+
+     ## External Issues
+     [Any linked issues from the bead]
+
+     ## Changes
+     - [List of changes made]"
+     ```
+
+6. **Update bead status**:
+   - Mark the bead as "in_review": `bd update [BEAD_ID] --status=in_review`
+   - Add the PR URL to the bead notes: `bd update [BEAD_ID] --notes="$(bd show [BEAD_ID] --json | jq -r '.notes')
+
+PR: [PR_URL]"`
+
+7. **Report results**:
+   - Return: PR URL, bead ID, success/failure status
+   - If blocked or unable to complete, explain what's blocking progress
+```
+
+### Launching Subagents
+
+Use `subagent_type: "general-purpose"` for implementation subagents. Launch all selected beads' subagents in a single message for parallel execution:
+
+```
+<Task calls for each selected bead - all in one message>
+```
+
+Collect results from all subagents before proceeding.
+
+## Phase 3: Parallel Review
+
+After all implementation subagents complete, launch review subagents for each PR.
+
+### Review Subagent Instructions Template
+
+```
+Review PR for bead [BEAD_ID]
+
+1. **Detect hosting provider**: Run `git remote get-url origin` - if it contains `github.com` use `gh`, otherwise use `tea`
+
+2. **Read the PR**:
+   - For GitHub: `gh pr view [PR_NUMBER] --json title,body,additions,deletions,files`
+   - For Gitea: `tea pr view [PR_NUMBER]`
+   - View the diff: `git diff main...bead/[BEAD_ID]`
+
+3. **Review against acceptance criteria**:
+   - Run `bd show [BEAD_ID]` to get the acceptance criteria
+   - Verify each criterion is addressed
+
+4. **Leave review comments**:
+   - For GitHub: `gh pr review [PR_NUMBER] --comment --body "[COMMENTS]"`
+   - For Gitea: `tea pr review [PR_NUMBER] --comment "[COMMENTS]"`
+   - Include:
+     - Acceptance criteria checklist (which are met, which might be missing)
+     - Code quality observations
+     - Suggestions for improvement
+
+5. **Return summary**:
+   - Overall assessment (ready to merge / needs changes)
+   - Key findings
+```
+
+Launch all review subagents in parallel.
+
+## Phase 4: Cleanup and Summary
+
+After reviews complete:
+
+1. **Clean up worktrees**:
+   ```bash
+   git worktree remove ~/wt/[REPO_NAME]/[BEAD_ID] --force
+   ```
+   Do this for each bead's worktree.
+
+2. **Provide final summary**:
+   Present a table or list with:
+   - Bead ID
+   - PR URL
+   - Status (success / failed / blocked)
+   - Review summary
+   - Any failures or blockers encountered
+
+Example output:
+```
+## Parallel Beads Summary
+
+| Bead | PR | Bead Status | Review |
+|------|-----|-------------|--------|
+| beads-abc | #123 | in_review | Approved |
+| beads-xyz | #124 | in_review | Needs changes |
+| beads-123 | - | open (failed) | Blocked by missing dependency |
+
+### Failures/Blockers
+- beads-123: Could not complete because [reason]
+
+### Next Steps
+- Review PRs that need changes
+- Address blockers for failed beads
+- Run `/reconcile_beads` after PRs are merged to close beads
+```
+
+## Error Handling
+
+- **Subagent failures**: If a subagent fails or times out, note it in the summary but continue with other beads
+- **PR creation failures**: Report the error but continue with reviews of successful PRs
+- **Worktree conflicts**: If a worktree already exists, ask the user if they want to remove it or skip that bead
+
+## Resource Limits
+
+- Consider limiting concurrent subagents to 3-5 to avoid overwhelming system resources
+- If user selects more beads than the limit, process them in batches
+
+## Notes
+
+- This workflow integrates with the beads system (`bd` commands)
+- Worktrees are created in `~/wt/[REPO_NAME]/` by convention
+- Each bead gets its own isolated branch and worktree
+- PRs automatically reference the bead ID for traceability

home/roles/development/skills/reconcile_beads.md

@@ -0,0 +1,88 @@
+---
+description: Reconcile beads with merged PRs and close completed beads
+---
+
+# Reconcile Beads Workflow
+
+This skill reconciles beads that are in `in_review` status with their corresponding PRs. If a PR has been merged, the bead is closed.
+
+## Prerequisites
+
+- Custom status `in_review` must be configured: `bd config set status.custom "in_review"`
+- Beads in `in_review` status should have a PR URL in their notes
+
+## Workflow
+
+### Step 1: Find beads in review
+
+```bash
+bd list --status=in_review
+```
+
+### Step 2: For each bead, check PR status
+
+1. **Get the PR URL from bead notes**:
+   ```bash
+   bd show [BEAD_ID] --json | jq -r '.[0].notes'
+   ```
+   Note: `bd show --json` returns an array, so use `.[0]` to access the first element.
+   Extract the PR URL (look for lines starting with "PR:" or containing pull request URLs).
+   Extract the PR number: `echo "$NOTES" | grep -oP '/pulls/\K\d+'`
+
+2. **Detect hosting provider**:
+   - Run `git remote get-url origin`
+   - If URL contains `github.com`, use `gh`; otherwise use `tea` (Gitea/Forgejo)
+
+3. **Check PR status**:
+   - For GitHub:
+     ```bash
+     gh pr view [PR_NUMBER] --json state,merged
+     ```
+   - For Gitea:
+     ```bash
+     tea pr list --state=closed
+     ```
+     Look for the PR number in the INDEX column with STATE "merged".
+     Note: `tea pr view [PR_NUMBER]` lists all PRs, not a specific one. Use `tea pr list --state=closed` and look for your PR number in the results.
+
+### Step 3: Close merged beads
+
+If the PR is merged:
+```bash
+bd close [BEAD_ID] --reason="PR merged: [PR_URL]"
+```
+
+### Step 4: Report summary
+
+Present results:
+
+```
+## Beads Reconciliation Summary
+
+### Closed (PR Merged)
+| Bead | PR | Title |
+|------|-----|-------|
+| beads-abc | #123 | Feature X |
+| beads-xyz | #456 | Bug fix Y |
+
+### Still in Review
+| Bead | PR | Status | Title |
+|------|-----|--------|-------|
+| beads-def | #789 | Open | Feature Z |
+
+### Issues Found
+- beads-ghi: No PR URL found in notes
+- beads-jkl: PR #999 not found (may have been deleted)
+```
+
+## Error Handling
+
+- **Missing PR URL**: Skip the bead and report it
+- **PR not found**: Report the error but continue with other beads
+- **API errors**: Report and continue
+
+## Notes
+
+- This skill complements `/parallel_beads` which sets beads to `in_review` status
+- Run this skill periodically or after merging PRs to keep beads in sync
+- Beads with closed (but not merged) PRs are not automatically closed - they may need rework

home/roles/starship/default.nix

@@ -0,0 +1,72 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.home.roles.starship;
+in
+{
+  options.home.roles.starship = {
+    enable = mkEnableOption "starship cross-shell prompt";
+  };
+
+  config = mkIf cfg.enable {
+    programs.starship = {
+      enable = true;
+      enableBashIntegration = true;
+      enableZshIntegration = true;
+
+      settings = {
+        add_newline = true;
+
+        character = {
+          success_symbol = "[>](bold green)";
+          error_symbol = "[x](bold red)";
+          vimcmd_symbol = "[<](bold green)";
+        };
+
+        directory = {
+          truncation_length = 4;
+          truncate_to_repo = true;
+        };
+
+        git_branch = {
+          symbol = "";
+          format = "[$symbol$branch(:$remote_branch)]($style) ";
+        };
+
+        git_status = {
+          format = "([$all_status$ahead_behind]($style) )";
+        };
+
+        nix_shell = {
+          symbol = "";
+          format = "[$symbol$state( \\($name\\))]($style) ";
+        };
+
+        cmd_duration = {
+          min_time = 2000;
+          format = "[$duration]($style) ";
+        };
+
+        # Disable modules that are noisy or rarely needed
+        package.disabled = true;
+        nodejs.disabled = true;
+        python.disabled = true;
+        ruby.disabled = true;
+        java.disabled = true;
+        golang.disabled = true;
+        rust.disabled = true;
+        php.disabled = true;
+        lua.disabled = true;
+        perl.disabled = true;
+        terraform.disabled = true;
+        kubernetes.disabled = true;
+        docker_context.disabled = true;
+        aws.disabled = true;
+        gcloud.disabled = true;
+        azure.disabled = true;
+      };
+    };
+  };
+}

machines/john-endesktop/MIGRATION_PLAN.md

@@ -170,6 +170,7 @@ This document outlines the plan to migrate the john-endesktop server from Arch L
    ```bash
    blkid /dev/nvme0n1p5
    # Note the UUID for updating hardware-configuration.nix
+/dev/nvme0n1p5: LABEL="nixos" UUID="5f4ad025-bfab-4aed-a933-6638348059e5" UUID_SUB="4734d820-7b8a-4b7f-853a-026021c1d204" BLOCK_SIZE="4096" TYPE="btrfs" PARTLABEL="data" PARTUUID="9ea025df-cdb7-48fd-b5d4-37cd5d8588eb"
    ```
 
 8. **Copy your NixOS configuration to the server**
@@ -388,11 +389,11 @@ After successful migration and 24-48 hours of stable operation:
 
 Pre-migration:
 - [x] nvme0n1p5 removal from media pool complete
-- [ ] Recent backup verified (< 24 hours)
+- [x] Recent backup verified (< 24 hours)
-- [ ] Maintenance window scheduled
+- [x] Maintenance window scheduled
-- [ ] NixOS ISO downloaded
+- [x] NixOS ISO downloaded
-- [ ] Bootable USB created
+- [x] Bootable USB created
-- [ ] NixOS config builds successfully
+- [x] NixOS config builds successfully
 
 During migration:
 - [ ] ZFS pools exported

roles/common.nix

@@ -0,0 +1,35 @@
+# Common configuration shared between NixOS and Darwin
+{ lib, pkgs, ... }:
+
+{
+  config = {
+    time.timeZone = "America/Los_Angeles";
+
+    environment.systemPackages = with pkgs; [
+      git
+      glances
+      pciutils
+      tree
+      usbutils
+      vim
+    ];
+
+    nix = {
+      package = pkgs.nix;
+      settings = {
+        experimental-features = [ "nix-command" "flakes" ];
+        max-jobs = "auto";
+        trusted-users = [ "johno" ];
+        substituters = [
+        ];
+      };
+
+      gc = {
+        automatic = true;
+        options = "--delete-older-than 10d";
+      };
+    };
+
+    nixpkgs.config.allowUnfree = true;
+  };
+}

roles/darwin.nix

@@ -7,6 +7,10 @@ let
   setEnvironmentPath = "${config.system.build.setEnvironment}";
 in
 {
+  imports = [
+    ./common.nix
+  ];
+
   config = {
     # Salt manages /etc/bashrc, /etc/zshrc, /etc/zshenv
     # nix-darwin writes to .local variants for nix-specific configuration
@@ -43,8 +47,6 @@ in
       fi
     '';
 
-    time.timeZone = "America/Los_Angeles";
-
     # System preferences
     system.defaults = {
       # Custom keyboard shortcuts
@@ -79,42 +81,5 @@ in
         };
       };
     };
-
-    environment.systemPackages = with pkgs; [
-      git
-      glances
-      pciutils
-      tree
-      usbutils
-      vim
-    ];
-
-    nix = {
-      package = pkgs.nix;
-      # distributedBuilds = true;
-      # buildMachines = [{
-      #   hostName = "z790prors.oglehome";
-      #   system = "x86_64-linux";
-      #   protocol = "ssh-ng";
-      #   sshUser = "johno";
-      #   sshKey = "/root/.ssh/id_ed25519";
-      #   maxJobs = 3;
-      #   speedFactor = 2;
-      # }];
-      settings = {
-        experimental-features = [ "nix-command" "flakes" ];
-        max-jobs = "auto";
-        trusted-users = [ "johno" ];
-        substituters = [
-        ];
-      };
-
-      gc = {
-        automatic = true;
-        options = "--delete-older-than 10d";
-      };
-    };
-
-    nixpkgs.config.allowUnfree = true;
   };
-}
+}

roles/default.nix

@@ -4,6 +4,7 @@ with lib;
 
 {
   imports = [
+    ./common.nix
     ./audio
     ./bluetooth
     ./btrfs
@@ -31,7 +32,6 @@ with lib;
       LC_TELEPHONE = "en_US.UTF-8";
       LC_TIME = "en_US.UTF-8";
     };
-    time.timeZone = "America/Los_Angeles";
 
     services.xserver.xkb = {
       layout = "us";
@@ -49,42 +49,7 @@ with lib;
     # Enable the OpenSSH daemon.
     services.openssh.enable = true;
 
-    environment.systemPackages = with pkgs; [
+    # NixOS-specific gc option (not available on Darwin)
-      git
+    nix.gc.randomizedDelaySec = "14m";
-      glances
-      pciutils
-      tree
-      usbutils
-      vim
-    ];
-
-    nix = {
-      package = pkgs.nix;
-      # distributedBuilds = true;
-      # buildMachines = [{
-      #   hostName = "z790prors.oglehome";
-      #   system = "x86_64-linux";
-      #   protocol = "ssh-ng";
-      #   sshUser = "johno";
-      #   sshKey = "/root/.ssh/id_ed25519";
-      #   maxJobs = 3;
-      #   speedFactor = 2;
-      # }];
-      settings = {
-        experimental-features = [ "nix-command" "flakes" ];
-        max-jobs = "auto";
-        trusted-users = [ "johno" ];
-        substituters = [
-        ];
-      };
-
-      gc = {
-        automatic = true;
-        randomizedDelaySec = "14m";
-        options = "--delete-older-than 10d";
-      };
-    };
-
-    nixpkgs.config.allowUnfree = true;
   };
 }

scripts/bootstrap.sh

@@ -1,6 +1,7 @@
 #!/usr/bin/env bash
 # bootstrap.sh
-# Usage: sudo ./bootstrap.sh <hostname>
+# Usage: nix run .#bootstrap -- <hostname>
+# Or: sudo ./scripts/bootstrap.sh <hostname>
 set -euo pipefail
 
 NEW_HOSTNAME="${1:?missing hostname}"
@@ -8,4 +9,3 @@ FLAKE_URI="git+https://git.johnogle.info/johno/nixos-configs.git#${NEW_HOSTNAME}
 
 export NIX_CONFIG="experimental-features = nix-command flakes"
 nixos-rebuild switch --flake "$FLAKE_URI"
-

scripts/build-liveusb.sh

@@ -0,0 +1,22 @@
+#!/usr/bin/env bash
+# Build Live USB ISO from flake configuration
+# Creates an uncompressed ISO suitable for Ventoy and other USB boot tools
+# Usage: nix run .#build-liveusb
+# Or: ./scripts/build-liveusb.sh
+
+set -euo pipefail
+
+REPO_ROOT="${REPO_ROOT:-$(git rev-parse --show-toplevel 2>/dev/null || pwd)}"
+
+echo "Building Live USB ISO..."
+nix build "${REPO_ROOT}#nixosConfigurations.live-usb.config.system.build.isoImage" --show-trace
+
+if ls "${REPO_ROOT}/result/iso/"*.iso 1> /dev/null 2>&1; then
+    iso_file=$(ls "${REPO_ROOT}/result/iso/"*.iso)
+    echo "Build complete!"
+    echo "ISO location: $iso_file"
+    echo "Ready for Ventoy or dd to USB"
+else
+    echo "Build failed - no ISO file found"
+    exit 1
+fi