bd daemon sync: 2026-01-10 19:13:14

.beads/.gitignore

@@ -1,39 +0,0 @@
-# SQLite databases
-*.db
-*.db?*
-*.db-journal
-*.db-wal
-*.db-shm
-
-# Daemon runtime files
-daemon.lock
-daemon.log
-daemon.pid
-bd.sock
-sync-state.json
-last-touched
-
-# Local version tracking (prevents upgrade notification spam after git ops)
-.local_version
-
-# Legacy database files
-db.sqlite
-bd.db
-
-# Worktree redirect file (contains relative path to main repo's .beads/)
-# Must not be committed as paths would be wrong in other clones
-redirect
-
-# Merge artifacts (temporary files from 3-way merge)
-beads.base.jsonl
-beads.base.meta.json
-beads.left.jsonl
-beads.left.meta.json
-beads.right.jsonl
-beads.right.meta.json
-
-# NOTE: Do NOT add negation patterns (e.g., !issues.jsonl) here.
-# They would override fork protection in .git/info/exclude, allowing
-# contributors to accidentally commit upstream issue databases.
-# The JSONL files (issues.jsonl, interactions.jsonl) and config files
-# are tracked by git by default since no pattern above ignores them.

.beads/README.md

@@ -1,81 +0,0 @@
-# Beads - AI-Native Issue Tracking
-
-Welcome to Beads! This repository uses **Beads** for issue tracking - a modern, AI-native tool designed to live directly in your codebase alongside your code.
-
-## What is Beads?
-
-Beads is issue tracking that lives in your repo, making it perfect for AI coding agents and developers who want their issues close to their code. No web UI required - everything works through the CLI and integrates seamlessly with git.
-
-**Learn more:** [github.com/steveyegge/beads](https://github.com/steveyegge/beads)
-
-## Quick Start
-
-### Essential Commands
-
-```bash
-# Create new issues
-bd create "Add user authentication"
-
-# View all issues
-bd list
-
-# View issue details
-bd show <issue-id>
-
-# Update issue status
-bd update <issue-id> --status in_progress
-bd update <issue-id> --status done
-
-# Sync with git remote
-bd sync
-```
-
-### Working with Issues
-
-Issues in Beads are:
-- **Git-native**: Stored in `.beads/issues.jsonl` and synced like code
-- **AI-friendly**: CLI-first design works perfectly with AI coding agents
-- **Branch-aware**: Issues can follow your branch workflow
-- **Always in sync**: Auto-syncs with your commits
-
-## Why Beads?
-
-✨ **AI-Native Design**
-- Built specifically for AI-assisted development workflows
-- CLI-first interface works seamlessly with AI coding agents
-- No context switching to web UIs
-
-🚀 **Developer Focused**
-- Issues live in your repo, right next to your code
-- Works offline, syncs when you push
-- Fast, lightweight, and stays out of your way
-
-🔧 **Git Integration**
-- Automatic sync with git commits
-- Branch-aware issue tracking
-- Intelligent JSONL merge resolution
-
-## Get Started with Beads
-
-Try Beads in your own projects:
-
-```bash
-# Install Beads
-curl -sSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash
-
-# Initialize in your repo
-bd init
-
-# Create your first issue
-bd create "Try out Beads"
-```
-
-## Learn More
-
-- **Documentation**: [github.com/steveyegge/beads/docs](https://github.com/steveyegge/beads/tree/main/docs)
-- **Quick Start Guide**: Run `bd quickstart`
-- **Examples**: [github.com/steveyegge/beads/examples](https://github.com/steveyegge/beads/tree/main/examples)
-
----
-
-*Beads: Issue tracking that moves at the speed of thought* ⚡

.beads/config.yaml

@@ -1,62 +0,0 @@
-# Beads Configuration File
-# This file configures default behavior for all bd commands in this repository
-# All settings can also be set via environment variables (BD_* prefix)
-# or overridden with command-line flags
-
-# Issue prefix for this repository (used by bd init)
-# If not set, bd init will auto-detect from directory name
-# Example: issue-prefix: "myproject" creates issues like "myproject-1", "myproject-2", etc.
-# issue-prefix: ""
-
-# Use no-db mode: load from JSONL, no SQLite, write back after each command
-# When true, bd will use .beads/issues.jsonl as the source of truth
-# instead of SQLite database
-# no-db: false
-
-# Disable daemon for RPC communication (forces direct database access)
-# no-daemon: false
-
-# Disable auto-flush of database to JSONL after mutations
-# no-auto-flush: false
-
-# Disable auto-import from JSONL when it's newer than database
-# no-auto-import: false
-
-# Enable JSON output by default
-# json: false
-
-# Default actor for audit trails (overridden by BD_ACTOR or --actor)
-# actor: ""
-
-# Path to database (overridden by BEADS_DB or --db)
-# db: ""
-
-# Auto-start daemon if not running (can also use BEADS_AUTO_START_DAEMON)
-# auto-start-daemon: true
-
-# Debounce interval for auto-flush (can also use BEADS_FLUSH_DEBOUNCE)
-# flush-debounce: "5s"
-
-# Git branch for beads commits (bd sync will commit to this branch)
-# IMPORTANT: Set this for team projects so all clones use the same sync branch.
-# This setting persists across clones (unlike database config which is gitignored).
-# Can also use BEADS_SYNC_BRANCH env var for local override.
-# If not set, bd sync will require you to run 'bd config set sync.branch <branch>'.
-sync-branch: "beads-sync"
-
-# Multi-repo configuration (experimental - bd-307)
-# Allows hydrating from multiple repositories and routing writes to the correct JSONL
-# repos:
-#   primary: "."  # Primary repo (where this database lives)
-#   additional:   # Additional repos to hydrate from (read-only)
-#     - ~/beads-planning  # Personal planning repo
-#     - ~/work-planning   # Work planning repo
-
-# Integration settings (access with 'bd config get/set')
-# These are stored in the database, not in this file:
-# - jira.url
-# - jira.project
-# - linear.url
-# - linear.api-key
-# - github.org
-# - github.repo

.beads/metadata.json

@@ -1,4 +1,4 @@
 {
   "database": "beads.db",
-  "jsonl_export": "sync_base.jsonl"
+  "jsonl_export": "issues.jsonl"
 }

.gitattributes

@@ -1,3 +0,0 @@
-
-# Use bd merge for beads JSONL files
-.beads/issues.jsonl merge=beads

flake.lock

@@ -21,45 +21,6 @@
         "type": "github"
       }
     },
-    "doomemacs": {
-      "flake": false,
-      "locked": {
-        "lastModified": 1767773143,
-        "narHash": "sha256-QL/t9v2kFNxBDyNJb/s411o3mxujan+QX5IZglTdpTk=",
-        "owner": "doomemacs",
-        "repo": "doomemacs",
-        "rev": "3e15fb36d7f94f0a218bda977be4d3f5da983a71",
-        "type": "github"
-      },
-      "original": {
-        "owner": "doomemacs",
-        "repo": "doomemacs",
-        "type": "github"
-      }
-    },
-    "emacs-overlay": {
-      "inputs": {
-        "nixpkgs": [
-          "nix-doom-emacs-unstraightened"
-        ],
-        "nixpkgs-stable": [
-          "nix-doom-emacs-unstraightened"
-        ]
-      },
-      "locked": {
-        "lastModified": 1768011937,
-        "narHash": "sha256-SnU2XTo34vwVaijs+4VwcXTNwMWO4nwzzs08N39UagA=",
-        "owner": "nix-community",
-        "repo": "emacs-overlay",
-        "rev": "79abf71d9897cf3b5189f7175cda1b1102abc65c",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nix-community",
-        "repo": "emacs-overlay",
-        "type": "github"
-      }
-    },
     "flake-compat": {
       "flake": false,
       "locked": {
@@ -198,27 +159,6 @@
         "type": "github"
       }
     },
-    "nix-doom-emacs-unstraightened": {
-      "inputs": {
-        "doomemacs": "doomemacs",
-        "emacs-overlay": "emacs-overlay",
-        "nixpkgs": [],
-        "systems": "systems_2"
-      },
-      "locked": {
-        "lastModified": 1768034604,
-        "narHash": "sha256-62pIZMvGHhYJmMiiBsxHqZt/dFyENPcFHlJq5NJF3Sw=",
-        "owner": "marienz",
-        "repo": "nix-doom-emacs-unstraightened",
-        "rev": "9b3b8044fe4ccdcbb2d6f733d7dbe4d5feea18bc",
-        "type": "github"
-      },
-      "original": {
-        "owner": "marienz",
-        "repo": "nix-doom-emacs-unstraightened",
-        "type": "github"
-      }
-    },
     "nix-github-actions": {
       "inputs": {
         "nixpkgs": [
@@ -363,7 +303,6 @@
         "home-manager-unstable": "home-manager-unstable",
         "jovian": "jovian",
         "nix-darwin": "nix-darwin",
-        "nix-doom-emacs-unstraightened": "nix-doom-emacs-unstraightened",
         "nixos-wsl": "nixos-wsl",
         "nixpkgs": "nixpkgs_2",
         "nixpkgs-unstable": "nixpkgs-unstable",
@@ -385,21 +324,6 @@
         "repo": "default",
         "type": "github"
       }
-    },
-    "systems_2": {
-      "locked": {
-        "lastModified": 1681028828,
-        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
-        "owner": "nix-systems",
-        "repo": "default",
-        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nix-systems",
-        "repo": "default",
-        "type": "github"
-      }
     }
   },
   "root": "root",

flake.nix

@@ -47,12 +47,6 @@
       url = "github:steveyegge/beads";
       inputs.nixpkgs.follows = "nixpkgs-unstable";
     };
-
-    nix-doom-emacs-unstraightened = {
-      url = "github:marienz/nix-doom-emacs-unstraightened";
-      # Don't follow nixpkgs to avoid rebuild issues with emacs-overlay
-      inputs.nixpkgs.follows = "";
-    };
   };
 
   outputs = { self, nixpkgs, nixpkgs-unstable, nixos-wsl, ... } @ inputs: let
@@ -76,7 +70,6 @@
         home-manager.useUserPackages = true;
         home-manager.sharedModules = [
           inputs.plasma-manager.homeModules.plasma-manager
-          inputs.nix-doom-emacs-unstraightened.homeModule
         ];
         home-manager.extraSpecialArgs = {
           globalInputs = inputs;
@@ -105,7 +98,6 @@
         home-manager.useUserPackages = true;
         home-manager.sharedModules = [
           inputs.plasma-manager-unstable.homeModules.plasma-manager
-          inputs.nix-doom-emacs-unstraightened.homeModule
         ];
         home-manager.extraSpecialArgs = {
           globalInputs = inputs;
@@ -137,9 +129,6 @@
         ];
         home-manager.useGlobalPkgs = true;
         home-manager.useUserPackages = true;
-        home-manager.sharedModules = [
-          inputs.nix-doom-emacs-unstraightened.homeModule
-        ];
         home-manager.extraSpecialArgs = {
           globalInputs = inputs;
         };

home/home-live-usb.nix

@@ -14,12 +14,7 @@
     desktop.enable = true;
     tmux.enable = true;
     plasma-manager.enable = true;
-    emacs = {
-      enable = true;
-      # Use pre-built Doom Emacs - all packages built at nix build time
-      # This means no doom sync is needed after booting the live USB
-      prebuiltDoom = true;
-    };
+    emacs.enable = true;
     i3_sway.enable = true;
     # development.enable = false;  # Not needed for live USB
     # communication.enable = false; # Not needed for live USB

home/roles/emacs/default.nix

@@ -23,90 +23,55 @@ let
     if pkgs.stdenv.isDarwin
     then pkgs.emacs-macport.pkgs.withPackages emacsPackages
     else pkgs.emacs.pkgs.withPackages emacsPackages;
-
-  # Path to doom config directory (relative to this file)
-  doomConfigDir = ./doom;
 in
 {
   options.home.roles.emacs = {
     enable = mkEnableOption "Doom Emacs with vterm and tree-sitter support";
-
-    prebuiltDoom = mkOption {
-      type = types.bool;
-      default = false;
-      description = ''
-        Use nix-doom-emacs-unstraightened to pre-build all Doom packages at
-        nix build time. This eliminates the need to run `doom sync` after
-        first boot, making it ideal for live USB images or immutable systems.
-
-        When enabled, the doom configuration is read-only (stored in nix store).
-      '';
-    };
   };
 
-  config = mkIf cfg.enable (mkMerge [
-    # Common configuration for both modes
-    {
-      home.packages = [
-        pkgs.emacs-all-the-icons-fonts
-        pkgs.fira-code
-        pkgs.fontconfig
-        pkgs.graphviz
-        pkgs.isort
-        pkgs.nerd-fonts.fira-code
-        pkgs.nerd-fonts.droid-sans-mono
-        pkgs.nil # nix lsp language server
-        pkgs.nixfmt-rfc-style
-        (pkgs.ripgrep.override {withPCRE2 = true;})
-        pkgs.pipenv
-        pkgs.poetry
-        pkgs.python3
-      ];
+  config = mkIf cfg.enable {
+    home.packages = [
+      pkgs.emacs-all-the-icons-fonts
+      pkgs.fira-code
+      pkgs.fontconfig
+      pkgs.graphviz
+      pkgs.isort
+      pkgs.nerd-fonts.fira-code
+      pkgs.nerd-fonts.droid-sans-mono
+      pkgs.nil # nix lsp language server
+      pkgs.nixfmt-rfc-style
+      (pkgs.ripgrep.override {withPCRE2 = true;})
+      pkgs.pipenv
+      pkgs.poetry
+      pkgs.python3
+    ];
 
-      fonts.fontconfig.enable = true;
-    }
+    programs.emacs = {
+      enable = true;
+      package = defaultEmacsPackage;
+    };
 
-    # Standard Doom Emacs mode (requires doom sync at runtime)
-    (mkIf (!cfg.prebuiltDoom) {
-      programs.emacs = {
-        enable = true;
-        package = defaultEmacsPackage;
-      };
+    fonts.fontconfig.enable = true;
 
-      # Mount emacs and tree-sitter grammars from nix store
-      home.file = {
-        "${config.xdg.configHome}/emacs".source = doomEmacs;
-      };
+    # Mount emacs and tree-sitter grammars from nix store
+    home.file = {
+      "${config.xdg.configHome}/emacs".source = doomEmacs;
+    };
 
-      home.sessionPath = [
-        "${config.xdg.configHome}/emacs/bin"
-      ];
+    home.sessionPath = [
+      "${config.xdg.configHome}/emacs/bin"
+    ];
 
-      home.sessionVariables = {
-        DOOMDIR = "${config.xdg.configHome}/doom";
-        DOOMLOCALDIR = "${config.xdg.dataHome}/doom";
-      };
+    home.sessionVariables = {
+      DOOMDIR = "${config.xdg.configHome}/doom";
+      DOOMLOCALDIR = "${config.xdg.dataHome}/doom";
+    };
 
-      # TODO: Use mkOutOfStoreSymlink instead?
-      home.activation.doomConfig = lib.hm.dag.entryAfter ["writeBoundary"] ''
-        # Always remove and recreate the symlink to ensure it points to the source directory
-        rm -rf "${config.xdg.configHome}/doom"
-        ln -sf "${config.home.homeDirectory}/nixos-configs/home/roles/emacs/doom" "${config.xdg.configHome}/doom"
-      '';
-    })
-
-    # Pre-built Doom Emacs mode (no doom sync needed - ideal for live USB)
-    (mkIf cfg.prebuiltDoom {
-      programs.doom-emacs = {
-        enable = true;
-        doomDir = doomConfigDir;
-        doomLocalDir = "${config.xdg.dataHome}/doom";
-        # Add extra packages that aren't part of Doom but needed for our config
-        extraPackages = epkgs: [
-          epkgs.vterm
-          epkgs.treesit-grammars.with-all-grammars
-        ];
-      };
-    })
-  ]);
+    # TODO: Use mkOutOfStoreSymlink instead?
+    home.activation.doomConfig = lib.hm.dag.entryAfter ["writeBoundary"] ''
+      # Always remove and recreate the symlink to ensure it points to the source directory
+      rm -rf "${config.xdg.configHome}/doom"
+      ln -sf "${config.home.homeDirectory}/nixos-configs/home/roles/emacs/doom" "${config.xdg.configHome}/doom"
+    '';
+  };
 }

home/roles/emacs/doom/packages.el

@@ -51,21 +51,11 @@
 
 ;; (package! org-caldav)
 
-;; Note: Packages with custom recipes must be pinned for nix-doom-emacs-unstraightened
-;; to build deterministically. Update pins when upgrading packages.
-
 (package! gptel :recipe (:nonrecursive t))
 
 (package! claude-code-ide
-  :recipe (:host github :repo "manzaltu/claude-code-ide.el")
-  :pin "760240d7f03ff16f90ede9d4f4243cd94f3fed73")
+  :recipe (:host github :repo "manzaltu/claude-code-ide.el"))
 
 (package! gptel-tool-library
   :recipe (:host github :repo "aard-fi/gptel-tool-library"
-           :files ("*.el"))
-  :pin "baffc3b0d74a2b7cbda0d5cd6dd7726d6ccaca83")
-
-(package! beads
-  :recipe (:type git :repo "https://codeberg.org/ctietze/beads.el.git"
-           :files ("lisp/*.el"))
-  :pin "f40a6461d3c0fa0969311bbb6a1e30d1bba86c88")
+           :files ("*.el")))

machines/john-endesktop/hardware-configuration.nix

@@ -18,29 +18,12 @@
   # File systems - these will need to be updated after installation
   # The nvme0n1p5 partition will be formatted as btrfs for NixOS root
   fileSystems."/" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
+    # Update this device path after installation
+    device = "/dev/disk/by-uuid/CHANGE-THIS-TO-YOUR-UUID";
     fsType = "btrfs";
     options = [ "subvol=@" "compress=zstd" "noatime" ];
   };
 
-  fileSystems."/home" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@home" "compress=zstd" "noatime" ];
-  };
-
-  fileSystems."/nix" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@nix" "compress=zstd" "noatime" ];
-  };
-
-  fileSystems."/var/log" = {
-    device = "/dev/disk/by-uuid/5f4ad025-bfab-4aed-a933-6638348059e5";
-    fsType = "btrfs";
-    options = [ "subvol=@log" "compress=zstd" "noatime" ];
-  };
-
   fileSystems."/boot" = {
     # This should match your current EFI partition
     device = "/dev/disk/by-uuid/F5C6-D570";
@@ -52,8 +35,10 @@
   # The pools should be imported automatically via boot.zfs.extraPools
   # /media and /swarmvols will be mounted by ZFS
 
-  # No swap needed - 23GB RAM is sufficient for this NFS/ZFS server
-  swapDevices = [ ];
+  # Swap - using ZFS zvol
+  swapDevices = [
+    { device = "/dev/zvol/media/swap"; }
+  ];
 
   # CPU microcode
   hardware.cpu.intel.updateMicrocode = lib.mkDefault config.hardware.enableRedistributableFirmware;