bd sync: 2025-12-28 21:31:23

.beads/issues.jsonl

@@ -158,6 +158,7 @@
 {"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
 {"id":"bd-7l27","title":"Integrate migration detection into bd doctor","description":"Multiple migration commands (migrate_hash_ids.go, migrate_issues.go, migrate_sync.go, migrate_tombstones.go, migrate.go) have TODOs suggesting integration into 'bd doctor' for automatic migration detection. This would allow bd doctor to detect when migrations are needed and suggest running them.\n\nFiles:\n- cmd/bd/migrate_hash_ids.go:24\n- cmd/bd/migrate_issues.go:15\n- cmd/bd/migrate_sync.go:16\n- cmd/bd/migrate_tombstones.go:72\n- cmd/bd/migrate.go:22","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:24.018282-08:00","created_by":"stevey","updated_at":"2025-12-28T16:32:24.018282-08:00"}
 {"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
+{"id":"bd-7p5l","title":"Fix N+1 query pattern in swarm status blocked check","description":"In getSwarmStatus, when checking if an issue is blocked, we query each dependency individually with GetIssue. With 100 issues and 5 deps each, thats 500 extra queries. Fix: Build a status map upfront from the already-fetched childIssues slice. File: cmd/bd/swarm.go:706-710","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-28T21:31:07.586335-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T21:31:07.586335-08:00","dependencies":[{"issue_id":"bd-7p5l","depends_on_id":"bd-m6r3","type":"blocks","created_at":"2025-12-28T21:31:17.309538-08:00","created_by":"daemon"}]}
 {"id":"bd-7pwh","title":"HOP-compatible schema additions","description":"Add optional fields to Beads schema to enable future HOP integration.\nAll fields are backwards-compatible (optional, omitted if empty).\n\n## Reference\nSee ~/gt/docs/hop/BEADS-SCHEMA-CHANGES.md for full specification.\n\n## P1 Changes (Must Have Before Launch)\n\n### 1. EntityRef type\nStructured entity reference that can become HOP URI:\n```go\ntype EntityRef struct {\n    Name     string // \"polecat/Nux\"\n    Platform string // \"gastown\"\n    Org      string // \"steveyegge\"  \n    ID       string // \"polecat-nux\"\n}\n```\n\n### 2. creator field\nEvery issue tracks who created it (EntityRef).\n\n### 3. assignee_ref field\nStructured form alongside existing string assignee.\n\n### 4. validations array\nTrack who validated work completion:\n```go\ntype Validation struct {\n    Validator *EntityRef\n    Outcome   string    // accepted, rejected, revision_requested\n    Timestamp time.Time\n    Score     *float32  // Future\n}\n```\n\n## P2 Changes (Should Have)\n\n### 5. work_type field\n\"mutex\" (default) or \"open_competition\"\n\n### 6. crystallizes field\nBoolean - does this work compound (true) or evaporate (false)?\n\n### 7. cross_refs field\nArray of URIs to beads in other repos:\n- \"beads://github/anthropics/claude-code/bd-xyz\"\n\n## P3 Changes (Nice to Have)\n\n### 8. skill_vector placeholder\nReserved for future embeddings: []float32\n\n## Implementation Notes\n- All fields optional in JSONL serialization\n- Empty/null fields omit from output\n- No migration needed for existing data\n- CLI additions: --creator, --validated-by filters","notes":"Scope reduced after review. P1 only: EntityRef type, creator field, validations array. Deferred: assignee_ref, work_type, crystallizes, cross_refs, skill_vector (YAGNI - semantics unclear, can add later when needed).","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-22T02:42:39.267984-08:00","updated_at":"2025-12-22T20:09:09.211821-08:00","closed_at":"2025-12-22T20:09:09.211821-08:00","close_reason":"HOP P1 schema additions complete: EntityRef type, Creator field, Validations array. P2/P3 items deferred to bd-zt59."}
 {"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","close_reason":"Superseded by 0.30.7 release - already committed and pushed","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]}
 {"id":"bd-7xrg","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-27T18:14:31.190713-08:00","created_by":"deacon","updated_at":"2025-12-27T18:14:31.190713-08:00"}
@@ -439,6 +440,7 @@
 {"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey","metadata":"{}"}]}
 {"id":"bd-lz49","title":"Add gate fields: await_type, await_id, timeout, waiters","description":"Add gate-specific fields to the Issue type.\n\n## New Fields\n- await_type: string - Type of condition (gh:run, gh:pr, timer, human, mail)\n- await_id: string - Identifier for the condition\n- timeout: duration - Max time to wait before escalation\n- waiters: []string - Mail addresses to notify when gate clears\n\n## Implementation\n- Add fields to Issue struct in internal/types/types.go\n- Update SQLite schema for new columns\n- Add JSONL serialization/deserialization\n- Update import/export logic","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T11:44:32.720196-08:00","updated_at":"2025-12-23T12:00:03.837691-08:00","closed_at":"2025-12-23T12:00:03.837691-08:00","close_reason":"Gate fields added to Issue struct, ComputeContentHash, SQLite migration created, all storage queries updated","dependencies":[{"issue_id":"bd-lz49","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.738823-08:00","created_by":"daemon"},{"issue_id":"bd-lz49","depends_on_id":"bd-2v0f","type":"blocks","created_at":"2025-12-23T11:44:56.269351-08:00","created_by":"daemon"}]}
 {"id":"bd-m0tl","title":"bd create -f crashes with nil pointer dereference","description":"GitHub issue #674. The markdown import feature crashes at markdown.go:338 because global variables (store, ctx, actor) aren't initialized when createIssuesFromMarkdown is called. The function uses globals set by cobra command framework but is being called before they're ready. Need to either initialize globals at start of function or pass them as parameters.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T14:35:14.813012-08:00","updated_at":"2025-12-21T15:41:14.600953-08:00","closed_at":"2025-12-21T15:41:14.600953-08:00","close_reason":"Fixed: added nil check for store in createIssuesFromMarkdown"}
+{"id":"bd-m6r3","title":"Refactor: Extract shared getEpicChildren helper for swarm commands","description":"## Context\n`getSwarmStatus` and `analyzeEpicForSwarm` in cmd/bd/swarm.go have nearly identical code for:\n- Getting epic dependents via GetDependents\n- Filtering to parent-child relationships\n- Building childIDSet map\n- Building dependency maps\n\n## Implementation\n1. Extract `getEpicChildren(ctx, store, epicID)` that returns:\n   - `[]*types.Issue` - child issues\n   - `map[string]bool` - child ID set\n   - `map[string][]string` - dependency map (within children)\n   - `error`\n\n2. Refactor both `analyzeEpicForSwarm` and `getSwarmStatus` to use it\n\n3. Consider defining a named interface for the store methods:\n   ```go\n   type SwarmStore interface {\n       GetIssue(context.Context, string) (*types.Issue, error)\n       GetDependents(context.Context, string) ([]*types.Issue, error)\n       GetDependencyRecords(context.Context, string) ([]*types.Dependency, error)\n   }\n   ```\n\n## Files\n- cmd/bd/swarm.go (lines 150-248, 616-682)\n\n## Acceptance\n- No duplicated code for fetching epic children\n- Both commands produce identical results as before","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-28T21:30:55.55377-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T21:30:55.55377-08:00"}
 {"id":"bd-m7ib","title":"Add creator field to Issue struct","description":"Add Creator *EntityRef field to Issue. Tracks who created the issue. Optional, omitted if nil in JSONL. This enables CV chain tracking - every piece of work is attributed to its creator.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T17:53:31.599447-08:00","updated_at":"2025-12-22T20:03:24.264672-08:00","closed_at":"2025-12-22T20:03:24.264672-08:00","close_reason":"Added Creator *EntityRef field to Issue struct. Included in content hash. Test coverage added.","dependencies":[{"issue_id":"bd-m7ib","depends_on_id":"bd-7pwh","type":"parent-child","created_at":"2025-12-22T17:53:43.39957-08:00","created_by":"daemon"},{"issue_id":"bd-m7ib","depends_on_id":"bd-nmch","type":"blocks","created_at":"2025-12-22T17:53:47.826309-08:00","created_by":"daemon"}]}
 {"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% → 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"closed","priority":2,"issue_type":"task","assignee":"beads/delta","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-23T22:42:11.921388-08:00","closed_at":"2025-12-23T22:42:11.921388-08:00","close_reason":"Improved test coverage from 44.7% to 61.7% by adding comprehensive tests for Count, ResolveID, Delete, Stale, Comment, Metrics, Gate operations, Export, GetMutations, and MutationChan"}
 {"id":"bd-m964","title":"Consider FTS5 for text search at scale","description":"SearchIssues uses LIKE patterns for text search which can't use indexes.\n\n**Current query (queries.go:1475-1477):**\n```sql\n(title LIKE ? OR description LIKE ? OR id LIKE ?)\n```\n\n**Problem:** Full table scan on every text search. At 100K+ issues, this becomes slow.\n\n**SQLite FTS5 solution:**\n```sql\nCREATE VIRTUAL TABLE issues_fts USING fts5(\n  id, title, description, design, notes,\n  content='issues',\n  content_rowid='rowid'\n);\n\n-- Triggers to keep FTS in sync\nCREATE TRIGGER issues_ai AFTER INSERT ON issues BEGIN\n  INSERT INTO issues_fts(rowid, id, title, description, design, notes)\n  VALUES (new.rowid, new.id, new.title, new.description, new.design, new.notes);\nEND;\n-- (similar for UPDATE, DELETE)\n```\n\n**Trade-offs:**\n- Database size increase (~30-50% for text content)\n- Additional write overhead (trigger execution)\n- Better search capabilities (ranking, phrase search)\n\n**Decision needed:** Is full-text search a priority feature? Current LIKE search may be acceptable for most use cases.\n\n**Benchmark first:** Measure SearchIssues at 100K scale before implementing.","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-22T22:58:56.466121-08:00","updated_at":"2025-12-22T22:58:56.466121-08:00","dependencies":[{"issue_id":"bd-m964","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:56.466764-08:00","created_by":"daemon"}]}
@@ -584,6 +586,7 @@
 {"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-24T16:25:30.689807-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}],"deleted_at":"2025-12-24T16:25:30.689807-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-24T16:25:30.608841-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.608841-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.\n\nAfter running, verify the formula with:\n\n```bash\nbrew info steveyegge/beads/bd\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-24T16:25:30.525596-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.525596-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
+{"id":"bd-qsbn","title":"swarm status: Handle external dependencies and error cases","description":"Three issues: (1) Silent error swallowing - GetDependencyRecords errors are silently continued, but analyzeEpicForSwarm returns errors. Inconsistent. (2) External dependencies ignored - if issue depends on something outside epic thats still open, we mark it Ready incorrectly. (3) Command usage string says [epic-id] (optional) but requires exactly 1 arg. File: cmd/bd/swarm.go","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-28T21:31:08.574846-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T21:31:08.574846-08:00"}
 {"id":"bd-qy37","title":"Work on gt-8tmz.36: Validate expanded step IDs are unique...","description":"Work on gt-8tmz.36: Validate expanded step IDs are unique. After ApplyExpansions in internal/formula/expand.go, new steps can be created that might have duplicate IDs. Add validation in ApplyExpansions to check for duplicate step IDs after expansion. If duplicates found, return an error with the duplicate IDs. Add test in expand_test.go. When done, commit and push to main.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/slit","created_at":"2025-12-25T20:01:27.048018-08:00","updated_at":"2025-12-25T20:04:42.594254-08:00","closed_at":"2025-12-25T20:04:42.594254-08:00","close_reason":"Implemented step ID validation in ApplyExpansions with tests"}
 {"id":"bd-r06v","title":"Merge: bd-phtv","description":"branch: polecat/Pinner\ntarget: main\nsource_issue: bd-phtv\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:48:16.853715-08:00","updated_at":"2025-12-23T19:12:08.342414-08:00","closed_at":"2025-12-23T19:12:08.342414-08:00","close_reason":"Stale merge-requests from orphaned polecat branches - refinery not processing"}
 {"id":"bd-r22t","title":"Execute molecule bd-mol-xga: Release beads 0.37.0","description":"Execute molecule bd-mol-xga: Release beads 0.37.0","status":"closed","priority":2,"issue_type":"task","assignee":"beads/furiosa","created_at":"2025-12-26T01:12:48.454295-08:00","updated_at":"2025-12-26T01:27:26.165571-08:00","closed_at":"2025-12-26T01:27:26.165571-08:00","close_reason":"Release 0.37.0 version bump complete. Submitted to merge queue. Tagging needs to happen post-merge from main.","dependencies":[{"issue_id":"bd-r22t","depends_on_id":"bd-mol-xga","type":"blocks","created_at":"2025-12-26T01:13:17.380653-08:00","created_by":"daemon"}]}

.beads/sync-state.json

@@ -0,0 +1,7 @@
+{
+  "last_failure": "2025-12-28T21:31:01.521087-08:00",
+  "failure_count": 1,
+  "backoff_until": "2025-12-28T21:31:31.521087-08:00",
+  "needs_manual_sync": false,
+  "failure_reason": "git pull failed in worktree: exit status 128\nFrom github.com:steveyegge/beads\n * branch              beads-sync -\u003e FETCH_HEAD\nfatal: Cannot rebase onto multiple branches.\n"
+}