fix(test): resolve target path in symlink test for macOS
On macOS, /var is a symlink to /private/var, so EvalSymlinks returns the canonical path. The test needs to resolve the expected target path before comparison. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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@@ -32,6 +32,7 @@
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{"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"}
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{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"}
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{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"}
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{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]}
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{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon","metadata":"{}"}]}
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{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
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{"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"}
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@@ -69,6 +70,7 @@
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{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:25:59.529183-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00","close_reason":"Version 0.30.7 released successfully - all steps completed"}
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{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]}
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{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"}
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{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00","labels":["from:beads-crew-dave","thread:thread-71ac20c7e432"]}
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{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"}
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{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon","metadata":"{}"}]}
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{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"}
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@@ -139,6 +141,7 @@
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{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"}
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{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"}
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{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"}
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{"id":"bd-fa2h","title":"🤝 HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate → bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","assignee":"beads/crew/dave","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00","sender":"Steve Yegge","ephemeral":true}
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{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:25:52.805029-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","close_reason":"Local bd updated to 0.30.7","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]}
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{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"}
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{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
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@@ -290,6 +293,7 @@
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{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
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{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"}
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{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:26:12.607357-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"}
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{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` → defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` → `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T17:58:51.034201-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00","close_reason":"Obsolete - bd mail commands removed, mail now in Gas Town"}
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{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00","close_reason":"test molecule - deleting"}
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{"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"}
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{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"}
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@@ -212,8 +212,10 @@ func TestResolveForWrite(t *testing.T) {
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if err != nil {
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t.Fatalf("unexpected error: %v", err)
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}
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if got != target {
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t.Errorf("got %q, want %q", got, target)
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// Resolve target too - on macOS, /var is symlink to /private/var
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wantTarget, _ := filepath.EvalSymlinks(target)
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if got != wantTarget {
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t.Errorf("got %q, want %q", got, wantTarget)
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}
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})
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