bd sync: 2026-01-04 16:21:57

.beads/issues.jsonl

@@ -93,6 +93,7 @@
 {"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-24T16:25:30.089869-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.089869-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-3jcw","title":"activity.go: Missing test coverage","description":"The new activity.go command (from bd-xo1o.3) has no test coverage. At minimum, tests should cover:\n- parseDurationString() for various formats (5m, 1h, 2d, invalid)\n- filterEvents() for --mol and --type filtering\n- formatEvent() and getEventDisplay() for all mutation types\n\nDiscovered during code review of bd-xo1o implementation.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T04:06:15.563579-08:00","updated_at":"2025-12-23T04:14:56.150151-08:00","closed_at":"2025-12-23T04:14:56.150151-08:00"}
 {"id":"bd-3jrb","title":"bd close lacks cross-rig routing support","description":"The `bd close` command doesn't support cross-rig routing like `bd show` does.\n\n**Reproduction:**\n```\n# From gastown directory\nbd show bd-xyz    # Works (routes to beads)\nbd close bd-xyz   # Fails with 'no issue found matching'\n```\n\n**Root cause:**\n- `show.go` uses `needsRouting()` and `resolveAndGetIssueWithRouting()`\n- `close.go` only uses `utils.ResolvePartialIDs()` without routing\n\n**Other affected commands (likely):**\n- reopen\n- dep  \n- comments\n- label\n- duplicate\n- defer/undefer\n\n**Fix:**\nAdd routing support to `close.go` similar to `show.go` lines 44-147.","status":"closed","priority":2,"issue_type":"bug","created_at":"2026-01-01T11:20:41.195141-08:00","created_by":"gastown/crew/gus","updated_at":"2026-01-01T11:24:25.322979-08:00","closed_at":"2026-01-01T11:24:25.322979-08:00","close_reason":"test"}
+{"id":"bd-3mky","title":"Merge: amber-mk0evltm","description":"branch: polecat/amber-mk0evltm\ntarget: main\nsource_issue: amber-mk0evltm\nrig: beads\nagent_bead: bd-beads-polecat-amber\nretry_count: 0\nlast_conflict_sha: null\nconflict_task_id: null","status":"open","priority":2,"issue_type":"merge-request","created_at":"2026-01-04T16:21:45.827782-08:00","created_by":"beads/polecats/amber","updated_at":"2026-01-04T16:21:45.827782-08:00"}
 {"id":"bd-3rko","title":"Merge: topaz-1767142022153","description":"branch: polecat/topaz-1767142022153\ntarget: main\nsource_issue: topaz-1767142022153\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:06:22.77742-08:00","created_by":"beads/polecats/topaz","updated_at":"2025-12-30T18:12:30.969291-08:00","closed_at":"2025-12-30T18:11:07.793047-08:00"}
 {"id":"bd-3roq","title":"Add 'tracks' relation type for convoy tracking","description":"Add a new relation type 'tracks' for convoy → issue relationships.\n\nUnlike 'depends_on':\n- Non-blocking (tracked issue doesn't block convoy)\n- Cross-prefix capable (convoy in hq-* tracks issues in gt-*, bd-*)\n- Supports reverse lookup ('what convoys track this issue?')\n\nUsed by convoys to track issues across project chains without creating dependencies.\n\nRelated: hq-7h8jx (Convoy System epic in town beads)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-29T18:47:00.581639-08:00","created_by":"mayor","updated_at":"2025-12-29T21:04:52.609662-08:00","closed_at":"2025-12-29T21:04:52.609662-08:00","close_reason":"Closed"}
 {"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-12-23T23:48:18.11858-08:00","closed_at":"2025-12-23T23:48:18.11858-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon"}]}
@@ -302,6 +303,7 @@
 {"id":"bd-beads-crew-giles","title":"Crew worker giles in beads - human-managed persistent workspace.","description":"Crew worker giles in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null\nactive_mr: null\nnotification_level: null","status":"open","priority":2,"issue_type":"agent","created_at":"2026-01-04T11:22:11.009942-08:00","created_by":"mayor","updated_at":"2026-01-04T11:22:11.009942-08:00"}
 {"id":"bd-beads-crew-grip","title":"Crew worker grip in beads - human-managed persistent workspace.","description":"Crew worker grip in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.739788-08:00","created_by":"deacon","updated_at":"2026-01-04T16:15:57.52794-08:00"}
 {"id":"bd-beads-crew-wolf","title":"Crew worker wolf in beads - human-managed persistent workspace.","description":"Crew worker wolf in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.805884-08:00","created_by":"deacon","updated_at":"2026-01-04T16:07:41.115877-08:00"}
+{"id":"bd-beads-polecat-amber","title":"bd-beads-polecat-amber","description":"bd-beads-polecat-amber\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-uuo9\nrole_bead: hq-polecat-role\ncleanup_status: has_stash\nactive_mr: bd-3mky\nnotification_level: null","status":"open","priority":2,"issue_type":"agent","created_at":"2026-01-04T16:17:26.278115-08:00","created_by":"mayor","updated_at":"2026-01-04T16:21:46.90714-08:00"}
 {"id":"bd-beads-polecat-garnet","title":"bd-beads-polecat-garnet","description":"bd-beads-polecat-garnet\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-hmeb\nrole_bead: hq-polecat-role\ncleanup_status: null\nactive_mr: bd-f1xm\nnotification_level: null","status":"open","priority":2,"issue_type":"agent","created_at":"2026-01-04T15:12:49.812132-08:00","created_by":"mayor","updated_at":"2026-01-04T15:17:19.353906-08:00"}
 {"id":"bd-beads-polecat-jasper","title":"bd-beads-polecat-jasper","description":"bd-beads-polecat-jasper\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-oos3\nrole_bead: gt-polecat-role\ncleanup_status: null\nactive_mr: bd-srhu\nnotification_level: null","status":"tombstone","priority":2,"issue_type":"agent","created_at":"2026-01-02T12:41:56.3782-08:00","created_by":"mayor","updated_at":"2026-01-04T11:27:04.41339-08:00","deleted_at":"2026-01-02T16:57:50.038825-08:00","deleted_by":"mayor","delete_reason":"delete","original_type":"agent"}
 {"id":"bd-beads-polecat-newbot","title":"Agent: bd-beads-polecat-newbot","status":"tombstone","priority":0,"issue_type":"agent","created_at":"2026-01-02T12:25:10.273273-08:00","created_by":"beads/polecats/obsidian","updated_at":"2026-01-02T12:25:42.678762-08:00","labels":["rig:beads","role_type:polecat"],"deleted_at":"2026-01-02T12:25:42.678762-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"agent"}
@@ -309,7 +311,7 @@
 {"id":"bd-beads-polecat-onyx","title":"bd-beads-polecat-onyx","description":"bd-beads-polecat-onyx\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-w3rh\nrole_bead: gt-polecat-role\ncleanup_status: null\nactive_mr: bd-xv0k\nnotification_level: null","status":"tombstone","priority":2,"issue_type":"agent","created_at":"2026-01-02T12:55:29.132464-08:00","created_by":"mayor","updated_at":"2026-01-04T11:30:16.253989-08:00","deleted_at":"2026-01-02T16:57:50.672016-08:00","deleted_by":"mayor","delete_reason":"delete","original_type":"agent"}
 {"id":"bd-beads-polecat-opal","title":"bd-beads-polecat-opal","description":"bd-beads-polecat-opal\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-r24e\nrole_bead: gt-polecat-role\ncleanup_status: null\nactive_mr: bd-do8v\nnotification_level: null","status":"tombstone","priority":2,"issue_type":"agent","created_at":"2026-01-02T16:47:13.940237-08:00","created_by":"mayor","updated_at":"2026-01-04T11:23:36.170275-08:00","deleted_at":"2026-01-02T16:57:50.994035-08:00","deleted_by":"mayor","delete_reason":"delete","original_type":"agent"}
 {"id":"bd-beads-polecat-quartz","title":"bd-beads-polecat-quartz","description":"bd-beads-polecat-quartz\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-kbfn\nrole_bead: gt-polecat-role\ncleanup_status: null\nactive_mr: bd-kc6v\nnotification_level: null","status":"tombstone","priority":2,"issue_type":"agent","created_at":"2026-01-02T12:41:40.403065-08:00","created_by":"mayor","updated_at":"2026-01-04T11:29:18.874891-08:00","deleted_at":"2026-01-02T16:57:51.341713-08:00","deleted_by":"mayor","delete_reason":"delete","original_type":"agent"}
-{"id":"bd-beads-polecat-ruby","title":"bd-beads-polecat-ruby","description":"bd-beads-polecat-ruby\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-p7i2\nrole_bead: hq-polecat-role\ncleanup_status: null\nactive_mr: null\nnotification_level: null","status":"open","priority":2,"issue_type":"agent","created_at":"2026-01-04T16:16:58.553407-08:00","created_by":"mayor","updated_at":"2026-01-04T16:17:00.75087-08:00"}
+{"id":"bd-beads-polecat-ruby","title":"bd-beads-polecat-ruby","description":"bd-beads-polecat-ruby\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-p7i2\nrole_bead: hq-polecat-role\ncleanup_status: has_stash\nactive_mr: bd-j7v7\nnotification_level: null","status":"open","priority":2,"issue_type":"agent","created_at":"2026-01-04T16:16:58.553407-08:00","created_by":"mayor","updated_at":"2026-01-04T16:21:32.547113-08:00"}
 {"id":"bd-beads-polecat-testbot","title":"Agent: bd-beads-polecat-testbot","status":"tombstone","priority":0,"issue_type":"agent","created_at":"2026-01-02T12:24:15.11753-08:00","created_by":"beads/polecats/obsidian","updated_at":"2026-01-02T12:24:57.611128-08:00","labels":["rig:beads","role_type:polecat"],"deleted_at":"2026-01-02T12:24:57.611128-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"agent"}
 {"id":"bd-beads-polecat-topaz","title":"bd-beads-polecat-topaz","description":"bd-beads-polecat-topaz\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-3tqg\nrole_bead: gt-polecat-role\ncleanup_status: null\nactive_mr: bd-ngfl\nnotification_level: null","status":"open","priority":2,"issue_type":"agent","created_at":"2026-01-04T11:36:03.898913-08:00","created_by":"mayor","updated_at":"2026-01-04T11:45:09.200848-08:00"}
 {"id":"bd-beads-refinery","title":"Refinery for beads - processes merge queue.","description":"Refinery for beads - processes merge queue.\n\nrole_type: refinery\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-refinery-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.469888-08:00","created_by":"deacon","updated_at":"2025-12-30T23:14:04.469888-08:00"}
@@ -517,6 +519,7 @@
 {"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
 {"id":"bd-j4cr","title":"bd cook: waits_for field not preserved in cooked protos","description":"The `waits_for` field in formula steps is not preserved in the cooked proto.\n\n## Formula\n\n```yaml\n- id: aggregate\n  title: Aggregate arm results\n  needs: [survey-workers]\n  waits_for: all-children\n  description: |\n    This is a **fanout gate**...\n```\n\n## Expected\n\nThe cooked proto step should have metadata indicating it's a gate:\n- Label: `gate:all-children` or\n- Field in issue metadata indicating wait behavior\n\n## Actual\n\nThe `waits_for` field is silently ignored. Only the description mentions 'fanout gate'.\n\n## Impact\n\nThe execution engine cannot determine which steps are gates that need to wait\nfor dynamically-bonded children. This breaks the Christmas Ornament pattern\nwhere aggregate steps must wait for all polecat-arm wisps to complete.\n\n## Related\n\nbd-hr39: needs field not converted to step dependencies","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-24T13:51:10.494565-08:00","updated_at":"2025-12-24T13:59:09.932552-08:00","closed_at":"2025-12-24T13:59:09.932552-08:00"}
 {"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
+{"id":"bd-j7v7","title":"Merge: ruby-mk0ev0fb","description":"branch: polecat/ruby-mk0ev0fb\ntarget: main\nsource_issue: ruby-mk0ev0fb\nrig: beads\nagent_bead: bd-beads-polecat-ruby\nretry_count: 0\nlast_conflict_sha: null\nconflict_task_id: null","status":"open","priority":2,"issue_type":"merge-request","created_at":"2026-01-04T16:21:31.460826-08:00","created_by":"beads/polecats/ruby","updated_at":"2026-01-04T16:21:31.460826-08:00"}
 {"id":"bd-jbqx","title":"Code smell: Repeated validation patterns could be centralized","description":"Similar validation patterns appear in multiple commands (create.go, show.go, update.go, etc.):\n- Check if resource exists\n- Check if resource is in valid state\n- Validate user input\n- Check permissions\n\n**Problem:**\n- Duplicated validation logic\n- Inconsistent validation between commands\n- Hard to add new validation rules consistently\n\n**Acceptance Criteria:**\n- [ ] Create internal/validation package\n- [ ] Centralize common validation logic\n- [ ] Use composition for validation chains\n- [ ] Update commands to use shared validators\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T19:00:03.171186-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T18:12:30.979965-08:00","closed_at":"2025-12-30T15:58:50.871474-08:00","close_reason":"Implemented composable validators in internal/validation/issue.go with Chain() composition, migrated show_unit_helpers.go to use centralized validators","dependencies":[{"issue_id":"bd-jbqx","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.84458-08:00","created_by":"daemon"}]}
 {"id":"bd-jdz3","title":"Add pager support to bd list","description":"Add pager support following gh cli conventions:\n\nFlags:\n- --no-pager: disable pager for this command\n\nEnvironment variables:\n- BD_PAGER / PAGER: pager program (default: less)\n- BD_NO_PAGER: disable pager globally\n\nBehavior:\n- Auto-enable pager when output exceeds terminal height\n- Respect LESS env var for pager options\n- Disable pager when stdout is not a TTY (pipes/scripts)","notes":"## Implementation Plan\n\n### Dependencies\n```go\nimport \"github.com/muesli/termenv\" // or golang.org/x/term\n```\n\n### Code Changes\n\n1. **Add pager helper** (internal/ui/pager.go):\n```go\nfunc ToPager(content string) error {\n    // Check BD_NO_PAGER or --no-pager\n    if os.Getenv(\"BD_NO_PAGER\") \\!= \"\" {\n        fmt.Print(content)\n        return nil\n    }\n    \n    // Get pager command\n    pager := os.Getenv(\"BD_PAGER\")\n    if pager == \"\" {\n        pager = os.Getenv(\"PAGER\")\n    }\n    if pager == \"\" {\n        pager = \"less\"\n    }\n    \n    // Check if content exceeds terminal height\n    // If not, just print directly\n    \n    // Pipe to pager\n    cmd := exec.Command(pager)\n    cmd.Stdin = strings.NewReader(content)\n    cmd.Stdout = os.Stdout\n    cmd.Stderr = os.Stderr\n    return cmd.Run()\n}\n```\n\n2. **Add --no-pager flag** (cmd/bd/list.go init):\n```go\nlistCmd.Flags().Bool(\"no-pager\", false, \"Disable pager output\")\n```\n\n3. **Use pager in list output** (end of Run):\n```go\nif \\!noPager \u0026\u0026 isTerminal(os.Stdout) {\n    ui.ToPager(output.String())\n} else {\n    fmt.Print(output.String())\n}\n```\n\n### Environment Variables\n- `BD_PAGER`: pager program (overrides PAGER)\n- `BD_NO_PAGER`: set to any value to disable\n- `PAGER`: fallback pager\n- `LESS`: passed through for less options\n\n### Testing\n- `bd list` pipes to pager when output \u003e terminal height\n- `bd list --no-pager` prints directly\n- `BD_NO_PAGER=1 bd list` prints directly\n- `bd list | cat` auto-disables pager (not a TTY)","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-29T15:25:09.109258-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.356435-08:00","closed_at":"2025-12-30T00:41:45.168318-08:00","close_reason":"Merged via refinery"}
 {"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 → 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"tombstone","priority":0,"issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
@@ -729,7 +732,7 @@
 {"id":"bd-oy6c","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh 0.33.2 to update 10 version files. Then run with --commit after info.go is updated.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.759706-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-oy7n","title":"Merge: jasper-mjw4bxkx","description":"branch: polecat/jasper-mjw4bxkx\ntarget: main\nsource_issue: jasper-mjw4bxkx\nrig: beads\nagent_bead: gt-beads-polecat-jasper","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2026-01-01T16:25:12.663026-08:00","created_by":"beads/polecats/jasper","updated_at":"2026-01-01T16:26:55.339728-08:00","closed_at":"2026-01-01T16:26:55.339728-08:00","close_reason":"Merged to main"}
 {"id":"bd-p5za","title":"mol-christmas-launch: 3-day execution plan","description":"Christmas Launch Molecule - execute phases in order, survive restarts.\n\nPIN THIS BEAD. Check progress each session start.\n\n## Step: phase0-beads-foundation\nFix blocking issues before swarming:\n1. Verify gastown beads schema works: bd list --status=open\n2. Ensure bd mol bond exists (check bd-usro)\n3. Verify bd-2vh3 (squash) is filed\n\n## Step: phase1-polecat-loop\nSerial work on polecat execution:\n1. gt-9nf: Fresh polecats only\n2. gt-975: Molecule execution support\n3. gt-8v8: Refuse uncommitted work\nThen swarm: gt-e1y, gt-f8v, gt-eu9\nNeeds: phase0-beads-foundation\n\n## Step: phase2-refinery\nSerial work on refinery autonomy:\n1. gt-5gkd: Refinery CLAUDE.md\n2. gt-bj6f: Refinery context in gt prime\n3. gt-0qki: Refinery-Witness protocol\nNeeds: phase1-polecat-loop\n\n## Step: phase3-deacon\nHealth monitoring infrastructure:\n1. gt-5af.4: Simplify daemon\n2. gt-5af.7: Crew session patterns\n3. gt-976: Crew lifecycle\nNeeds: phase2-refinery\n\n## Step: phase4-code-review\nSelf-improvement flywheel:\n1. Define mol-code-review (gt-fjvo)\n2. Test on open MRs\n3. Integrate with Refinery\nNeeds: phase3-deacon\n\n## Step: phase5-polish\nDemo readiness:\n1. gt-b2hj: Find orphaned work\n2. Doctor checks\n3. Clean up open MRs\nNeeds: phase4-code-review\n\n## Step: verify-flywheel\nSuccess criteria:\n- gt spawn works with molecules\n- Refinery processes MRs autonomously\n- mol-code-review runs on a PR\n- bd cleanup --ephemeral works\nNeeds: phase5-polish","status":"closed","priority":0,"issue_type":"epic","created_at":"2025-12-20T21:20:02.462889-08:00","updated_at":"2025-12-21T17:23:25.471749-08:00","closed_at":"2025-12-21T17:23:25.471749-08:00"}
-{"id":"bd-p7i2","title":"Add unit test for gitHasUncommittedBeadsChanges()","description":"The new helper function from bd-vd8e needs unit tests in sync_git_test.go to verify:\n- Returns false when no changes\n- Returns true for M (modified)\n- Returns true for A (added)\n- Returns false for ?? (untracked)\n- Returns false for D (deleted)\n\nPart of GH#885 follow-up.","status":"open","priority":2,"issue_type":"task","created_at":"2026-01-04T16:15:53.96425-08:00","created_by":"beads/crew/fang","updated_at":"2026-01-04T16:15:53.96425-08:00"}
+{"id":"bd-p7i2","title":"Add unit test for gitHasUncommittedBeadsChanges()","description":"The new helper function from bd-vd8e needs unit tests in sync_git_test.go to verify:\n- Returns false when no changes\n- Returns true for M (modified)\n- Returns true for A (added)\n- Returns false for ?? (untracked)\n- Returns false for D (deleted)\n\nPart of GH#885 follow-up.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecats/ruby","created_at":"2026-01-04T16:15:53.96425-08:00","created_by":"beads/crew/fang","updated_at":"2026-01-04T16:20:40.004117-08:00","closed_at":"2026-01-04T16:20:40.004117-08:00","close_reason":"Added parseGitStatusForBeadsChanges helper function and 14 unit tests covering: empty status, modified (staged/unstaged/both), added, untracked, deleted, renamed, copied, and edge cases"}
 {"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"tombstone","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["release","v0.30.4","workflow"],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"}
 {"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
@@ -889,7 +892,7 @@
 {"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget:  bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T23:22:43.567337-08:00","closed_at":"2025-12-20T23:22:43.567337-08:00"}
 {"id":"bd-usvv","title":"Defer SQLite metadata updates until after git commit succeeds","description":"Part of GH#885 fix: bulletproof sync atomicity.\n\nCurrently exportToJSONL() immediately:\n- Clears dirty flags in SQLite\n- Updates last_import_time metadata\n\nThis happens BEFORE git commit, so if commit fails, SQLite \"lies\" about sync state.\n\nFix: Move metadata updates to AFTER git commit succeeds:\n1. Export JSONL to disk (atomic file write)\n2. Stage and commit to git\n3. ONLY THEN clear dirty flags and update last_import_time\n\nKey files:\n- cmd/bd/sync_export.go:147-170 (premature updates)\n- cmd/bd/sync.go:555 (commit point)\n\nThis is the core fix for the atomicity gap.","status":"closed","priority":1,"issue_type":"task","created_at":"2026-01-04T13:53:23.619319-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-04T15:22:08.704907-08:00","closed_at":"2026-01-04T15:16:21.245756-08:00","close_reason":"Implemented deferred metadata updates - finalizeExport() now runs after git commit succeeds","dependencies":[{"issue_id":"bd-usvv","depends_on_id":"bd-pnx2","type":"parent-child","created_at":"2026-01-04T13:53:55.798447-08:00","created_by":"beads/crew/emma"}]}
 {"id":"bd-uu8p","title":"Routing bypassed in daemon mode","description":"## Bug\n\nPrefix-based routing (routes.jsonl) only works in direct mode. When the daemon is running, it bypasses routing logic because:\n\n1. Daemon mode resolves IDs via RPC (`daemonClient.ResolveID`)\n2. Daemon uses its own store, which only knows about local beads\n3. The routing logic in `resolveAndGetIssueWithRouting` is only called in direct mode\n\n## Reproduction\n\n```bash\n# With daemon running:\ncd ~/gt\nbd show gt-1py3y  # Fails - daemon can't find it\n\n# With daemon bypassed:\nbd --no-daemon show gt-1py3y  # Works - uses routing\n```\n\n## Fix Options\n\n### Option A: Client-side routing detection (Recommended)\nBefore calling daemon RPC, check if the ID prefix matches a route to a different beads dir. If so, use direct mode with routing for that ID.\n\n```go\n// In show.go, before daemon mode:\nif daemonClient != nil \u0026\u0026 needsRouting(id) {\n    // Fall back to direct mode for this ID\n    result, err := resolveAndGetIssueWithRouting(ctx, store, id)\n    ...\n}\n```\n\n### Option B: Daemon-side routing\nAdd routing support to the daemon RPC server. More complex - daemon would need to:\n- Load routes.jsonl on startup\n- Open connections to multiple databases\n- Route requests based on ID prefix\n\n### Option C: Hybrid\nDaemon returns \"not found + prefix hint\", client retries with routing.\n\n## Recommendation\n\nOption A is simplest. The client already has routing logic; just use it when we detect a routed prefix.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-26T14:52:00.452285-08:00","updated_at":"2025-12-26T14:54:51.572289-08:00","closed_at":"2025-12-26T14:54:51.572289-08:00"}
-{"id":"bd-uuo9","title":"Avoid double export when uncommitted JSONL detected","description":"In sync.go, when gitHasUncommittedBeadsChanges() detects uncommitted changes, we export at line 175. But the normal flow exports again at line 296.\n\nAdd a skip flag to avoid redundant work:\n- Set alreadyExported=true after pre-flight export\n- Skip later export if flag is set\n\nMinor optimization, not urgent.\n\nPart of GH#885 follow-up (bd-vd8e).","status":"open","priority":3,"issue_type":"task","created_at":"2026-01-04T16:15:55.491155-08:00","created_by":"beads/crew/fang","updated_at":"2026-01-04T16:15:55.491155-08:00"}
+{"id":"bd-uuo9","title":"Avoid double export when uncommitted JSONL detected","description":"In sync.go, when gitHasUncommittedBeadsChanges() detects uncommitted changes, we export at line 175. But the normal flow exports again at line 296.\n\nAdd a skip flag to avoid redundant work:\n- Set alreadyExported=true after pre-flight export\n- Skip later export if flag is set\n\nMinor optimization, not urgent.\n\nPart of GH#885 follow-up (bd-vd8e).","status":"closed","priority":3,"issue_type":"task","assignee":"beads/polecats/amber","created_at":"2026-01-04T16:15:55.491155-08:00","created_by":"beads/crew/fang","updated_at":"2026-01-04T16:20:46.91292-08:00","closed_at":"2026-01-04T16:20:46.91292-08:00","close_reason":"Added alreadyExported flag to skip redundant export when pre-flight check already exported"}
 {"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"}
 {"id":"bd-uwkp","title":"Phase 2.4: Git merge driver optimization for TOON format","description":"Optimize git 3-way merge for TOON line-oriented format.\n\n## Overview\nTOON is line-oriented (unlike binary formats), enabling smarter git merge strategies. Implement custom merge driver to handle TOON-specific merge patterns.\n\n## Required Work\n\n### 2.4.1 TOON Merge Driver\n- [ ] Create .git/info/attributes entry for *.toon files\n- [ ] Implement custom merge driver script/command\n- [ ] Handle tabular format row merges (line-based 3-way)\n- [ ] Handle YAML-style format merges\n- [ ] Conflict markers for unsolvable conflicts\n\n### 2.4.2 Merge Patterns\n- [ ] Row addition: both branches add different rows → union\n- [ ] Row deletion: one branch deletes, other modifies → conflict (manual review)\n- [ ] Row modification: concurrent field changes → intelligent merge or conflict\n- [ ] Field ordering changes: ignore (TOON format resilient to order)\n\n### 2.4.3 Testing \u0026 Documentation\n- [ ] Unit tests for merge scenarios (3-way merge logic)\n- [ ] Integration tests with actual git merges\n- [ ] Conflict scenario testing\n- [ ] Documentation of merge strategy\n\n## Success Criteria\n- Git merge handles TOON conflicts intelligently\n- Fewer manual merge conflicts than JSONL\n- Round-trip preserved through merges\n- All 70+ tests still passing\n- Git history stays clean (minimal conflict markers)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:43:14.339238776-07:00","updated_at":"2025-12-21T14:42:26.434306-08:00","closed_at":"2025-12-21T14:42:26.434306-08:00","dependencies":[{"issue_id":"bd-uwkp","depends_on_id":"bd-iic1","type":"discovered-from","created_at":"2025-12-19T14:43:14.34427988-07:00","created_by":"daemon"}]}
 {"id":"bd-uxlb","title":"Add bd agent state command for ZFC-compliant state reporting","description":"Add command for agents to write their own state to agent beads.\n\n```bash\nbd agent state \u003cagent-id\u003e \u003cstate\u003e\n# Example: bd agent state gt-mayor running\n# States: idle | running | stuck | stopped | dead\n```\n\nImplementation:\n1. Lookup agent bead by ID (type=agent)\n2. Update agent_state field in description\n3. Update last_activity timestamp\n4. Trigger bd sync if configured\n\nAlso add:\n- bd agent heartbeat \u003cagent-id\u003e - just updates last_activity\n- bd agent show \u003cagent-id\u003e - show agent bead details\n\nThis is the ZFC-compliant way for agents to self-report state.\n\nCross-ref: gt-p2vyo in gastown","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T01:49:46.325964-08:00","created_by":"mayor","updated_at":"2025-12-28T01:57:05.839623-08:00","closed_at":"2025-12-28T01:57:05.839623-08:00"}