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bd sync: 2025-12-27 21:27:50

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Steve Yegge
2025-12-27 21:27:50 -08:00
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@@ -161,6 +161,7 @@
{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-24T16:25:30.231077-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.231077-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
{"id":"bd-8wgo","title":"bd merge omits priority:0 due to omitempty JSON tag","description":"GitHub issue #671. The merge code in internal/merge/merge.go uses 'omitempty' on the Priority field, which causes priority:0 (P0/critical) to be dropped from JSON output since 0 is Go's zero value for int. Fix: either remove omitempty from Priority field or use a pointer (*int). This affects the git merge driver and causes P0 issues to lose their priority.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T14:35:15.083146-08:00","updated_at":"2025-12-21T15:41:14.522554-08:00","closed_at":"2025-12-21T15:41:14.522554-08:00","close_reason":"Fixed: removed omitempty from Priority field in types.Issue and merge.Issue"}
{"id":"bd-8x3w","title":"Add composite index (issue_id, type) on dependencies table","description":"GetBlockedIssues uses EXISTS clauses that filter by issue_id AND type together.\n\n**Query pattern (ready.go:427-429):**\n```sql\nEXISTS (\n SELECT 1 FROM dependencies d2\n WHERE d2.issue_id = i.id AND d2.type = 'blocks'\n)\n```\n\n**Problem:** Only idx_dependencies_issue exists. SQLite must filter type after index lookup.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_dependencies_issue_type ON dependencies(issue_id, type);\n```\n\n**Note:** This complements the existing idx_dependencies_depends_on_type for the reverse direction.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-22T22:58:52.876846-08:00","updated_at":"2025-12-22T23:15:13.840789-08:00","closed_at":"2025-12-22T23:15:13.840789-08:00","close_reason":"Implemented in migration 026_additional_indexes.go","dependencies":[{"issue_id":"bd-8x3w","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:52.877536-08:00","created_by":"daemon"}]}
{"id":"bd-8x43","title":"Add 'bd where' command to show active beads location","description":"## Problem\n\nWhen using redirects, it's unclear which beads database is actually being used. This caused debugging confusion during the v0.39.0 release.\n\n## Proposed Solution\n\nAdd `bd where` command:\n\n```bash\nbd where\n# → /Users/stevey/gt/beads/mayor/rig/.beads (via redirect from crew/dave/.beads)\n\nbd where --json\n# → {\"path\": \"...\", \"redirected_from\": \"...\", \"prefix\": \"bd\"}\n```\n\n## Alternatives Considered\n\n- `bd info --beads-path` - but `bd where` is more discoverable\n- Just fix the UX so it's never confusing - defense in depth is better\n\n## Desire Paths\n\nThis supports the 'desire paths' design principle: make the system's behavior visible so agents can debug and understand it.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-27T21:15:52.666948-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T21:27:50.301295-08:00","closed_at":"2025-12-27T21:27:50.301295-08:00","close_reason":"Closed"}
{"id":"bd-8y9t","title":"Remove bd mol spawn - use pour/wisp only","description":"Remove the spawn command from bd mol. Replace with:\n\n- bd pour \u003cproto\u003e - Instantiate as mol (liquid, persistent)\n- bd wisp \u003cproto\u003e - Instantiate as wisp (vapor, ephemeral)\n\nRationale:\n- 'spawn' doesn't fit the chemistry metaphor\n- Two phase transitions (pour/wisp) are clearer than one command with flags\n- Avoids confusion about defaults\n\nImplementation:\n1. Add bd pour command (currently bd mol spawn --pour)\n2. Add bd wisp command (currently bd mol spawn without --pour)\n3. Remove bd mol spawn\n4. Update all docs/tests\n\nGas Town tracking: gt-ingm.6","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-24T12:40:51.698189-08:00","updated_at":"2025-12-24T12:52:55.307-08:00","closed_at":"2025-12-24T12:52:55.307-08:00","close_reason":"Removed bd mol spawn, use bd pour or bd wisp create instead"}
{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-12-25T22:26:54.442614-08:00","closed_at":"2025-12-25T22:26:54.442614-08:00","close_reason":"bd prime is implemented and working; bd setup cursor deferred - Cursor integration not a priority"}
{"id":"bd-9115","title":"CLI cleanup: Consolidate bd top-level commands","description":"## Problem\nbd has 76 top-level commands, making it hard to discover and remember.\n\n## Proposed Changes\n\n### Remove from top-level (nest instead):\n- `bd cook` → `bd formula cook` (cooking is a formula operation)\n- `bd pin` → already covered by `bd mol` commands\n- `bd thanks` → `bd info --thanks` or just README\n- `bd quickstart` → `bd help quickstart` or docs\n- `bd detect-pollution` → `bd doctor --check=pollution`\n\n### Consolidate migrations under `bd migrate`:\n- `bd migrate-hash-ids` → `bd migrate hash-ids`\n- `bd migrate-issues` → `bd migrate issues`\n- `bd migrate-sync` → `bd migrate sync`\n- `bd migrate-tombstones` → `bd migrate tombstones`\n\n### Consolidate admin under `bd admin`:\n- `bd cleanup` → `bd admin cleanup`\n- `bd compact` → `bd admin compact`\n- `bd reset` → `bd admin reset`\n\n## Backwards Compatibility\nKeep old commands as hidden aliases for one release cycle.","status":"closed","priority":2,"issue_type":"task","assignee":"mayor","created_at":"2025-12-27T14:28:03.299469-08:00","created_by":"mayor","updated_at":"2025-12-27T16:19:44.580326-08:00","closed_at":"2025-12-27T16:19:44.580326-08:00","close_reason":"CLI consolidation complete: cook→formula, migrate-*, admin command, detect-pollution→doctor, aliases, pin removal, thanks/quickstart relocation, docs updated","dependencies":[{"issue_id":"bd-9115","depends_on_id":"bd-w3z7","type":"blocks","created_at":"2025-12-27T15:11:44.88081-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-do8e","type":"blocks","created_at":"2025-12-27T15:11:44.905058-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-3u8m","type":"blocks","created_at":"2025-12-27T15:11:44.929207-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-x0zl","type":"blocks","created_at":"2025-12-27T15:11:44.953799-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-wb9g","type":"blocks","created_at":"2025-12-27T15:11:44.977559-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-twbi","type":"blocks","created_at":"2025-12-27T15:11:45.002403-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-kff0","type":"blocks","created_at":"2025-12-27T15:11:45.027177-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-bxqv","type":"blocks","created_at":"2025-12-27T15:11:45.051629-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-5e9q","type":"blocks","created_at":"2025-12-27T15:11:45.07537-08:00","created_by":"daemon"}]}
@@ -174,7 +175,6 @@
{"id":"bd-9qj5","title":"Merge: bd-c7y5","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-c7y5\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:45:02.626929-08:00","updated_at":"2025-12-23T21:21:57.699742-08:00","closed_at":"2025-12-23T21:21:57.699742-08:00","close_reason":"stale - no code pushed"}
{"id":"bd-9szg","title":"Test prefix bd","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T14:24:41.470665-08:00","created_by":"stevey","updated_at":"2025-12-27T14:24:50.420887-08:00","deleted_at":"2025-12-27T14:24:50.420887-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"closed","priority":2,"issue_type":"bug","assignee":"beads/cheedo","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-23T23:48:57.837606-08:00","closed_at":"2025-12-23T23:48:57.837606-08:00","close_reason":"Tests no longer hang - verified test suite completes in ~30s across multiple runs on both polecat/cheedo and main branches. Issue may have been resolved by recent test infrastructure improvements."}
{"id":"bd-9vsn","title":"Deacon Patrol","description":"Mayor's daemon patrol loop for handling callbacks, health checks, and cleanup.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-27T19:23:56.729136-08:00","created_by":"deacon","updated_at":"2025-12-27T19:23:56.729136-08:00"}
{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-05T16:37:10.690424-08:00"}
{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"closed","priority":2,"issue_type":"task","assignee":"beads/valkyrie","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-23T23:56:07.002735-08:00","closed_at":"2025-12-23T23:56:07.002735-08:00","close_reason":"Closed"}
{"id":"bd-a3sj","title":"RemoveDependency fails on external deps - FK violation in dirty_issues","description":"In dependencies.go:225, RemoveDependency marks BOTH issueID and dependsOnID as dirty. For external refs (e.g., external:project:capability), dependsOnID doesn't exist in the issues table. This causes FK violation since dirty_issues.issue_id has FK constraint to issues.id.\n\nFix: Check if dependsOnID starts with 'external:' and only mark source issue as dirty, matching the logic in AddDependency (lines 162-170).\n\nRepro: bd dep rm \u003cissue\u003e external:project:capability","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T23:44:51.981138-08:00","updated_at":"2025-12-22T17:48:29.062424-08:00","closed_at":"2025-12-22T17:48:29.062424-08:00","close_reason":"Fixed: check for external: prefix before marking dependsOnID as dirty in RemoveDependency. Added test.","dependencies":[{"issue_id":"bd-a3sj","depends_on_id":"bd-zmmy","type":"discovered-from","created_at":"2025-12-21T23:44:51.982343-08:00","created_by":"daemon"}]}
@@ -282,6 +282,7 @@
{"id":"bd-exy3","title":"Ephemeral patrol molecules leaking into beads","description":"## Problem\n\nEphemeral patrol orchestration molecules (e.g., mol-deacon-patrol, wisp step issues) keep appearing in `bd ready` output in gastown beads.\n\nThese are ephemeral/wisp issues that should:\n1. Never be synced to the beads-sync branch\n2. Live only in .beads-wisp/ (ephemeral storage)\n3. Be squashed to digests, not persisted as regular beads\n\n## Examples found\n\n- gt-wisp-6ue: mol-deacon-patrol\n- gt-pacdm: mol-deacon-patrol \n- gt-wisp-mpm: Check own context limit\n- gt-wisp-lkc: Clean dead sessions\n\n## Investigation needed\n\n1. Where are these being created? (gt mol bond? manual bd create?)\n2. Why are they using the gt- prefix instead of staying ephemeral?\n3. Is the wisp storage (.beads-wisp/) being used correctly?\n4. Is bd sync accidentally picking up ephemeral issues?\n\n## Expected behavior\n\nPatrol molecules and their steps should be ephemeral and never appear in `bd ready` or `bd list`.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-27T17:04:16.51075-08:00","created_by":"gastown/crew/joe","updated_at":"2025-12-27T19:18:16.809273-08:00","closed_at":"2025-12-27T19:18:16.809273-08:00","close_reason":"Moved to gastown: gt-glisw"}
{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"}
{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-20T23:17:27.000252-08:00","closed_at":"2025-12-20T23:17:27.000252-08:00","close_reason":"Branches nuked, MRs obsolete"}
{"id":"bd-f526","title":"Deacon Patrol","description":"Mayor's daemon patrol loop for handling callbacks, health checks, and cleanup.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-27T18:14:20.809207-08:00","created_by":"deacon","updated_at":"2025-12-27T18:14:20.809207-08:00"}
{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"}
{"id":"bd-f616","title":"Digest: Version Bump: test-squash","description":"## Molecule Execution Summary\n\n**Molecule**: Version Bump: test-squash\n**Steps**: 8\n\n**Completed**: 0/8\n\n---\n\n### Steps\n\n1. **[open]** Verify release artifacts\n Check GitHub releases page - binaries for darwin/linux/windows should be available\n\n2. **[open]** Commit and push release\n git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI\n\n3. **[open]** Update CHANGELOG.md with release notes\n Add meaningful release notes to CHANGELOG.md describing what changed in test-squash\n\n4. **[open]** Wait for CI to pass\n Monitor GitHub Actions - all checks must pass before release artifacts are built\n\n5. **[open]** Restart running daemons\n Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start\n\n6. **[open]** Update local installation\n Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash\n\n7. **[open]** Run bump-version.sh test-squash\n Run ./scripts/bump-version.sh test-squash to update version in all files\n\n8. **[open]** Update info.go versionChanges\n Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for test-squash\n\n","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T13:53:18.471919-08:00","updated_at":"2025-12-21T13:53:35.256043-08:00","close_reason":"Squashed from 8 ephemeral steps","deleted_at":"2025-12-21T13:53:35.256043-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"}
{"id":"bd-f7p1","title":"Add tests for mol spawn --attach","description":"Code review (bd-obep) found no tests for the spawn --attach functionality.\n\n**Test cases needed:**\n1. Basic attach - spawn proto with one --attach\n2. Multiple attachments - spawn with --attach A --attach B\n3. Attach types - verify sequential vs parallel bonding\n4. Error case: attaching non-proto (missing template label)\n5. Variable aggregation - vars from primary + attachments combined\n6. Dry-run output includes attachment info\n\n**Implementation notes:**\n- Tests should use in-memory storage\n- Create test protos, spawn with attachments, verify dependency structure\n- Check that sequential uses 'blocks' type, parallel uses 'parent-child'","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T10:58:16.766461-08:00","updated_at":"2025-12-21T21:33:12.136215-08:00","closed_at":"2025-12-21T21:33:12.136215-08:00","close_reason":"Added 6 tests for mol spawn --attach: basic attach, multiple attachments, sequential/parallel bond types, non-proto validation, variable aggregation, and dry-run output","dependencies":[{"issue_id":"bd-f7p1","depends_on_id":"bd-obep","type":"discovered-from","created_at":"2025-12-21T10:58:16.767616-08:00","created_by":"daemon"}]}
@@ -355,6 +356,7 @@
{"id":"bd-jke6","title":"Add covering index (label, issue_id) for label queries","description":"GetIssuesByLabel joins labels table but requires table lookup after using idx_labels_label.\n\n**Query (labels.go:165):**\n```sql\nSELECT ... FROM issues i\nJOIN labels l ON i.id = l.issue_id\nWHERE l.label = ?\n```\n\n**Problem:** Current idx_labels_label index doesn't cover issue_id, requiring row lookup.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_labels_label_issue ON labels(label, issue_id);\n```\n\nThis is a covering index - query can be satisfied entirely from the index without touching the labels table rows.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-22T22:58:51.485354-08:00","updated_at":"2025-12-22T23:15:13.839904-08:00","closed_at":"2025-12-22T23:15:13.839904-08:00","close_reason":"Implemented in migration 026_additional_indexes.go","dependencies":[{"issue_id":"bd-jke6","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:51.485984-08:00","created_by":"daemon"}]}
{"id":"bd-jv4w","title":"Phase 1.2: Separate bdt executable - Initial structure","description":"Create minimal bdt command structure completely separate from bd. Must not share code, config, or database.\n\n## Subtasks\n1. Create cmd/bdt/ directory with main.go\n2. Implement bdt version, help, and status commands\n3. Configure separate database location: $HOME/.bdt/ (not $HOME/.beads/)\n4. Create separate issues file: issues.toon (not issues.jsonl)\n5. Update build system:\n - Makefile: Add bdt target\n - .goreleaser.yml: Add bdt binary config\n\n## Files to Create\n- cmd/bdt/main.go - Entry point\n- cmd/bdt/version.go - Version handling\n- cmd/bdt/help.go - Help text (separate from bd)\n\n## Success Criteria\n- `make build` produces both `bd` and `bdt` executables\n- `bdt version` shows distinct version output from bd\n- `bdt --help` shows distinct help text\n- bdt uses $HOME/.bdt/ directory (verify with `bdt info`)\n- bd and bdt completely isolated (no shared imports beyond stdlib)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T11:48:34.866877282-07:00","updated_at":"2025-12-19T12:59:11.389296015-07:00","closed_at":"2025-12-19T12:59:11.389296015-07:00"}
{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"tombstone","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
{"id":"bd-kblo","title":"bd prime should mention when beads is redirected","description":"## Problem\n\nAgents running in a redirected clone don't know they're sharing beads with other clones. This can cause confusion when molecules or issues seem to 'appear' or 'disappear'.\n\n## Proposed Solution\n\nWhen `bd prime` runs and detects a redirect, include it in the output:\n\n```\nBeads: /Users/stevey/gt/beads/mayor/rig/.beads\n (redirected from crew/dave - you share issues with other clones)\n```\n\n## Why\n\nVisibility over magic. If agents can see the redirect, they can reason about it.\n\n## Related\n\n- bd where command (shows this on demand)\n- gt redirect following (ensures gt matches bd behavior)","status":"pinned","priority":3,"issue_type":"feature","assignee":"beads/crew/dave","created_at":"2025-12-27T21:15:55.026907-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T21:26:14.99327-08:00"}
{"id":"bd-kff0","title":"Integrate detect-pollution into bd doctor","description":"## Task\nMove `bd detect-pollution` → `bd doctor --check=pollution`\n\n## Current state\n- detect-pollution already shows deprecation hint pointing to doctor\n- Doctor command exists with multiple checks\n\n## Implementation\n\n### 1. Update doctor.go\n- Add pollution check to the doctor checks\n- Add `--check=pollution` flag option\n- Integrate detect-pollution logic\n\n### 2. Update detect_pollution.go\n- Mark as hidden (deprecated)\n- Forward to doctor --check=pollution\n- Keep for one release cycle\n\n### 3. Update docs\n- Remove detect-pollution from any command lists\n- Update doctor docs to include pollution check\n\n## Files to modify\n- cmd/bd/doctor.go\n- cmd/bd/detect_pollution.go\n","status":"closed","priority":2,"issue_type":"task","assignee":"onyx","created_at":"2025-12-27T15:11:10.46326-08:00","created_by":"mayor","updated_at":"2025-12-27T16:04:58.471341-08:00","closed_at":"2025-12-27T16:04:58.471341-08:00","close_reason":"Integrated detect-pollution into bd doctor --check=pollution","pinned":true}
{"id":"bd-knta","title":"Deacon Patrol","description":"Mayor's daemon patrol loop for handling callbacks, health checks, and cleanup.","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T13:08:21.233771-08:00","updated_at":"2025-12-27T00:10:54.179341-08:00","deleted_at":"2025-12-27T00:10:54.179341-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
{"id":"bd-kptp","title":"Merge: bd-qioh","description":"branch: polecat/Errata\ntarget: main\nsource_issue: bd-qioh\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T13:46:08.832073-08:00","updated_at":"2025-12-23T19:12:08.350136-08:00","closed_at":"2025-12-23T19:12:08.350136-08:00","close_reason":"Stale merge-requests from orphaned polecat branches - refinery not processing"}
@@ -581,7 +583,7 @@
{"id":"bd-trgb","title":"bd sync deleted non-.beads files (skills/beads/*)","description":"On 2025-12-23, commit 7b671662 (bd sync) inadvertently deleted 5 files from skills/beads/ that were added by PR #722 (commit e432fcc8). These files are outside .beads/ and should never be touched by bd sync.\n\nFiles deleted:\n- skills/beads/README.md\n- skills/beads/references/INTEGRATION_PATTERNS.md\n- skills/beads/references/MOLECULES.md\n- skills/beads/references/PATTERNS.md\n- skills/beads/references/TROUBLESHOOTING.md\n\nInvestigation needed:\n1. How did bd sync stage/commit files outside .beads/?\n2. Was this a one-time accident or is there a systematic bug?\n3. Add safeguards to prevent bd sync from touching non-.beads paths\n\nReported via GH#738.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-25T11:56:04.544656-08:00","updated_at":"2025-12-25T12:05:31.785355-08:00","closed_at":"2025-12-25T12:05:31.785355-08:00","close_reason":"Fixed - added pathspec to gitCommit() and commitToExternalBeadsRepo()"}
{"id":"bd-ttbf","title":"bd mol reset: Reset molecule to initial state for looping","description":"Implement bd mol reset for patrol loop behavior.\n\n## Command\n\n```bash\nbd mol reset \u003cmol-id\u003e\n```\n\n## Behavior\n\n1. Load molecule state from .beads/molecules/\u003cmol-id\u003e.state.yaml\n2. Reset all step states to pending\n3. Clear current_step (or set to first step)\n4. Preserve: bonded_at, bonded_by, variables\n5. Update: reset_count++, last_reset_at\n\n## Use Case: Deacon Patrol Loop\n\n```\ninbox-check → spawn-work → self-inspect → mol-reset → (loop)\n```\n\nThe Deacon runs its patrol, then resets the molecule to start fresh.\nNo gt handoff needed unless context is high.\n\n## State After Reset\n\n```yaml\nid: mol-deacon-patrol\nstatus: running\ncurrent_step: inbox-check # Back to first\nreset_count: 5\nlast_reset_at: 2025-12-24T...\nsteps:\n inbox-check: pending # All reset\n spawn-work: pending\n self-inspect: pending\n```\n\n## Files\n\n- cmd/bd/mol_reset.go\n- internal/mol/state.go (add Reset method)","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-24T15:53:20.154106-08:00","updated_at":"2025-12-24T16:53:14.837362-08:00","closed_at":"2025-12-24T16:53:14.837362-08:00","close_reason":"REJECTED: Blocked by bd-hulf which was rejected. The concept of 'reset' is valid but must work by reopening child beads - no external state file.","dependencies":[{"issue_id":"bd-ttbf","depends_on_id":"bd-hulf","type":"blocks","created_at":"2025-12-24T15:53:49.159903-08:00","created_by":"daemon"}]}
{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% → 70%)","description":"Improve test coverage for internal/beads package from 48% to 70%.\n\n## Current State\n- Coverage: 48.4%\n- Files: beads.go, fingerprint.go\n- Tests: beads_test.go (moderate coverage)\n\n## Functions Needing Tests\n\n### beads.go (database discovery)\n- [ ] followRedirect - needs redirect file tests\n- [ ] findDatabaseInBeadsDir - needs various dir structures\n- [x] NewSQLiteStorage - likely covered\n- [ ] FindDatabasePath - needs BEADS_DB env var tests\n- [ ] hasBeadsProjectFiles - needs file existence tests\n- [ ] FindBeadsDir - needs directory traversal tests\n- [ ] FindJSONLPath - needs path derivation tests\n- [ ] findGitRoot - needs git repo tests\n- [ ] findDatabaseInTree - needs nested directory tests\n- [ ] FindAllDatabases - needs multi-database tests\n- [ ] FindWispDir - needs wisp directory tests\n- [ ] FindWispDatabasePath - needs wisp path tests\n- [ ] NewWispStorage - needs wisp storage tests\n- [ ] EnsureWispGitignore - needs gitignore creation tests\n- [ ] IsWispDatabase - needs path classification tests\n\n### fingerprint.go (repo identification)\n- [ ] ComputeRepoID - needs various remote URL tests\n- [ ] canonicalizeGitURL - needs URL normalization tests\n- [ ] GetCloneID - needs clone identification tests\n\n## Implementation Guide\n\n1. **Use temp directories:**\n ```go\n func TestFindBeadsDir(t *testing.T) {\n tmpDir := t.TempDir()\n beadsDir := filepath.Join(tmpDir, \".beads\")\n os.MkdirAll(beadsDir, 0755)\n \n // Create test files\n os.WriteFile(filepath.Join(beadsDir, \"beads.db\"), []byte{}, 0644)\n \n // Change to tmpDir and test\n oldWd, _ := os.Getwd()\n os.Chdir(tmpDir)\n defer os.Chdir(oldWd)\n \n result := FindBeadsDir()\n assert.Equal(t, beadsDir, result)\n }\n ```\n\n2. **Test scenarios:**\n - BEADS_DB environment variable set\n - .beads/ in current directory\n - .beads/ in parent directory\n - Redirect file pointing elsewhere\n - No beads directory found\n - Wisp directory alongside main beads\n\n3. **Git remote URL tests:**\n ```go\n tests := []struct{\n input string\n expected string\n }{\n {\"git@github.com:user/repo.git\", \"github.com/user/repo\"},\n {\"https://github.com/user/repo\", \"github.com/user/repo\"},\n {\"ssh://git@github.com/user/repo.git\", \"github.com/user/repo\"},\n }\n ```\n\n## Success Criteria\n- Coverage ≥ 70%\n- All FindXxx functions have tests\n- Environment variable handling tested\n- Edge cases (missing dirs, redirects) covered\n\n## Run Tests\n```bash\ngo test -v -cover ./internal/beads\ngo test -race ./internal/beads\n```","status":"closed","priority":1,"issue_type":"task","assignee":"beads/Beader","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-23T13:36:17.885237-08:00","closed_at":"2025-12-23T13:36:17.885237-08:00","close_reason":"Coverage improved from 48.4% to 80.2%, exceeding 70% target","dependencies":[{"issue_id":"bd-tvu3","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.362967-08:00","created_by":"daemon"}]}
{"id":"bd-tvus","title":"bd import reports success but writes nothing to empty database","description":"## Problem\n\nIn a fresh crew clone with no database, `bd import` and `bd sync --import-only` report:\n```\nImport complete: 0 created, 0 updated, 416 unchanged, 203 skipped\n```\n\nBut the database remains empty:\n```\nsqlite3 .beads/beads.db 'SELECT COUNT(*) FROM issues'\n0\n```\n\n## Reproduction Steps\n\n1. Fresh clone (crew/dave) with .beads/issues.jsonl containing 619 issues\n2. `bd init --skip-hooks` creates empty database\n3. `bd import -i .beads/issues.jsonl` reports 416 unchanged\n4. Database still has 0 issues\n\n## Expected\n\nImport should create 416 issues in the database.\n\n## Root Cause Hypothesis\n\nThe 'unchanged' count suggests it's comparing against something (maybe in-memory state?) rather than the actual database. The daemon running from a different clone (mayor/rig) may be confusing the import logic.\n\n## Context\n\nDiscovered during v0.39.0 release. Worked around by doing the release manually instead of using the beads-release molecule.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-27T19:56:15.42338-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T20:42:05.364618-08:00","closed_at":"2025-12-27T20:42:05.364618-08:00","close_reason":"Fixed: extended redirect support to all doctor check functions. Code review revealed the original fix was incomplete."}
{"id":"bd-tvus","title":"bd import reports success but writes nothing to empty database","description":"## Problem\n\nIn a fresh crew clone with no database, `bd import` and `bd sync --import-only` report:\n```\nImport complete: 0 created, 0 updated, 416 unchanged, 203 skipped\n```\n\nBut the database remains empty:\n```\nsqlite3 .beads/beads.db 'SELECT COUNT(*) FROM issues'\n0\n```\n\n## Reproduction Steps\n\n1. Fresh clone (crew/dave) with .beads/issues.jsonl containing 619 issues\n2. `bd init --skip-hooks` creates empty database\n3. `bd import -i .beads/issues.jsonl` reports 416 unchanged\n4. Database still has 0 issues\n\n## Expected\n\nImport should create 416 issues in the database.\n\n## Root Cause Hypothesis\n\nThe 'unchanged' count suggests it's comparing against something (maybe in-memory state?) rather than the actual database. The daemon running from a different clone (mayor/rig) may be confusing the import logic.\n\n## Context\n\nDiscovered during v0.39.0 release. Worked around by doing the release manually instead of using the beads-release molecule.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-27T19:56:15.42338-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T20:56:24.023684-08:00","closed_at":"2025-12-27T20:56:24.023684-08:00","close_reason":"Not a bug: .beads/redirect file causes crew clone to use mayor/rig database. Import works correctly. Real issue is gt sling not following redirect."}
{"id":"bd-twbi","title":"Relocate quickstart to bd help quickstart or docs","description":"## Task\nMove `bd quickstart` → `bd help quickstart` or convert to documentation.\n\n## Options\n\n### Option A: Move to bd help quickstart\n- Create a custom help topic\n- Cobra supports additional help topics\n\n### Option B: Convert to docs only\n- Keep content in docs/QUICKSTART.md\n- Remove the command entirely\n- Update references to point to docs\n\n## Recommendation\nOption B - quickstart is essentially documentation, not a functional command.\nThe command just prints formatted text that could live in docs.\n\n## Implementation (Option B)\n1. Ensure docs/QUICKSTART.md has equivalent content\n2. Add hidden alias that prints \"See docs/QUICKSTART.md or bd help\"\n3. Update all references:\n - README.md\n - docs/INSTALLING.md\n - docs/EXTENDING.md\n - npm-package/INTEGRATION_GUIDE.md\n - .beads/README.md\n\n## Files to modify\n- cmd/bd/quickstart.go (hide or remove)\n- Multiple docs (update references)\n","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-27T15:11:10.238898-08:00","created_by":"mayor","updated_at":"2025-12-27T16:09:23.140978-08:00","closed_at":"2025-12-27T16:09:23.140978-08:00","close_reason":"Hid quickstart command with deprecation message, updated docs to point to docs/QUICKSTART.md"}
{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T23:17:26.994875-08:00","closed_at":"2025-12-20T23:17:26.994875-08:00","close_reason":"Branches nuked, MRs obsolete"}