johno/beads
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

bd daemon sync: 2026-01-07 00:21:36

Browse Source
This commit is contained in:
emma
2026-01-07 00:21:36 -08:00
committed by Steve Yegge
parent 3261091bba
commit cdac71a17b
1 changed files with 29 additions and 9 deletions
Download Patch File Download Diff File Expand all files Collapse all files

38
.beads/issues.jsonl
View File

@@ -27,6 +27,7 @@
{"id":"bd-13c2","title":"Merge: garnet-1767138539231","description":"branch: polecat/garnet-1767138539231\ntarget: main\nsource_issue: garnet-1767138539231\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:00:34.708302-08:00","created_by":"beads/polecats/garnet","updated_at":"2025-12-30T18:12:30.975825-08:00","closed_at":"2025-12-30T18:11:07.955982-08:00"}
{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-19T23:28:32.429492-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"}
{"id":"bd-14v0","title":"Add Windows code signing for bd.exe releases","description":"## Context\n\nGo binaries (including bd.exe) are commonly flagged by antivirus software as false positives due to heuristic detection. See docs/ANTIVIRUS.md for full details.\n\n## Problem\n\nKaspersky and other AV software flag bd.exe as PDM:Trojan.Win32.Generic, causing it to be quarantined or deleted.\n\n## Solution\n\nImplement code signing for Windows releases using:\n1. An EV (Extended Validation) code certificate\n2. Integration with GoReleaser to sign Windows binaries during release\n\n## Benefits\n\n- Reduces false positive rates over time as the certificate builds reputation\n- Provides tamper verification for users\n- Improves SmartScreen trust rating on Windows\n- Professional appearance for enterprise users\n\n## Implementation Steps\n\n1. Acquire EV code signing certificate (annual cost ~$300-500)\n2. Set up signtool or osslsigncode in release pipeline\n3. Update .goreleaser.yml to sign Windows binaries\n4. Update checksums to include signed binary hashes\n5. Document signing verification in ANTIVIRUS.md\n\n## References\n\n- docs/ANTIVIRUS.md - Current documentation\n- bd-t4u1 - Original Kaspersky false positive report\n- https://github.com/golang/go/issues/16292 - Go project discussion","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T23:46:48.459177-08:00","updated_at":"2025-12-23T23:54:41.912141-08:00","closed_at":"2025-12-23T23:54:41.912141-08:00","dependencies":[{"issue_id":"bd-14v0","depends_on_id":"bd-t4u1","type":"discovered-from","created_at":"2025-12-23T23:47:02.024159-08:00","created_by":"daemon"}]}
{"id":"bd-16z7","title":"Update convoy queries to use labels","description":"Change convoy-related SQL queries to use gt:convoy label instead of TypeConvoy.\n\n## Work\n- Update closeConvoyIfComplete() in queries.go\n- Update closeConvoyIfCompleteTx() in transaction.go\n- Change issue_type='convoy' checks to label-based queries\n\n## Files\n- internal/storage/sqlite/queries.go\n- internal/storage/sqlite/transaction.go","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:40:23.24327-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:07:23.212033-08:00","closed_at":"2026-01-06T22:07:23.212033-08:00","close_reason":"Changed convoy queries to use gt:convoy label instead of issue_type","dependencies":[{"issue_id":"bd-16z7","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.645917-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-1ban","title":"Test actor direct","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-26T20:46:02.423367-08:00","updated_at":"2025-12-28T09:26:06.083095-08:00","closed_at":"2025-12-28T09:26:06.083095-08:00"}
{"id":"bd-1dez","title":"Mol Mall: Formula marketplace using GitHub as backend","description":"Create a marketplace for sharing molecule formulas using GitHub repos as the hosting backend.\n\n## Architecture Update (Dec 2025)\n\n**Formulas are the sharing layer.** With ephemeral protos (bd-rciw), the architecture is:\n\n```\nFormulas ──cook──→ [ephemeral proto] ──pour/wisp──→ Mol/Wisp\n ↑ │\n └────────────────── distill ─────────────────────────┘\n```\n\n- **Formulas**: JSON source files (.formula.json) - the thing you share\n- **Protos**: Transient compilation artifacts - auto-deleted after use\n- **Mols/Wisps**: Execution instances - not shared directly\n\n**Key operations:**\n- `bd distill \u003cmol-id\u003e` → Extract formula from completed work\n- `bd mol publish \u003cformula\u003e` → Share to GitHub\n- `bd mol install \u003curl\u003e` → Fetch from GitHub\n- `bd pour \u003cformula\u003e` → Cook and spawn (proto is ephemeral)\n\n## Why GitHub?\n\nGitHub solves multiple problems at once:\n- **Hosting**: Raw file URLs for formula.json\n- **Versioning**: Git tags (v1.0.0, v1.2.0)\n- **Auth**: GitHub tokens for private formulas\n- **Discovery**: GitHub search, topics, stars\n- **Collaboration**: PRs for contributions, issues for bugs\n- **Organizations**: Natural scoping (@anthropic/, @gastown/)\n\n## URL Scheme\n\n```bash\n# Direct GitHub URL\nbd mol install github.com/anthropics/mol-code-review\n\n# With version tag\nbd mol install github.com/anthropics/mol-code-review@v1.2.0\n\n# Shorthand (via registry lookup)\nbd mol install @anthropic/mol-code-review\n```\n\n## Architecture\n\nEach formula lives in its own repo (like Go modules):\n```\ngithub.com/anthropics/mol-code-review/\n├── formula.json # The formula\n├── README.md # Documentation\n└── CHANGELOG.md # Version history\n```\n\n## ID Namespace\n\n| Entity | ID Format | Example |\n|--------|-----------|---------|\n| Formula (GitHub) | `github.com/org/repo` | `github.com/anthropics/mol-code-review` |\n| Installed formula | `mol-name` | `mol-code-review` |\n| Poured instance | `\u003cdb\u003e-mol-xxx` | `bd-mol-b8c` |","notes":"Deferred - focusing on Christmas launch first","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-25T12:05:17.666574-08:00","updated_at":"2025-12-25T21:53:13.415431-08:00","closed_at":"2025-12-25T21:53:13.415431-08:00"}
{"id":"bd-1dez.1","title":"bd distill: Extract formula from mol/epic","description":"Extract a formula from completed work (mol, wisp, or epic).\n\n**Key change**: Distill works on execution artifacts (mols/wisps/epics), not protos.\nProtos are ephemeral - they don't persist. Distillation extracts patterns from\nactual executed work.\n\n## Usage\n```bash\nbd distill bd-mol-xyz -o my-workflow.formula.json\nbd distill bd-epic-abc -o feature-workflow.formula.json\n```\n\n## Use Cases\n- **Emergent patterns**: Structured work manually, want to templatize it\n- **Modified execution**: Poured a formula, added custom steps, want to capture\n- **Learning from success**: Extract what made a complex mol succeed\n\n## Implementation\n1. Load mol/wisp/epic subgraph (root + all children)\n2. Convert to formula JSON structure\n3. Extract variables from patterns (titles, descriptions)\n4. Generate step IDs from issue titles (slugify)\n5. Write .formula.json file\n\n## Output Format\n```json\n{\n \"formula\": \"my-workflow\",\n \"description\": \"...\",\n \"version\": 1,\n \"vars\": { ... },\n \"steps\": [ ... ]\n}\n```\n\n## Architecture Note\nThis closes the formula lifecycle loop:\n Formulas ──cook──→ Mols ──distill──→ Formulas\n\nAll sharing happens via formulas. Mols contain execution context and aren't shared.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:05:47.045105-08:00","updated_at":"2025-12-25T18:54:39.967765-08:00","closed_at":"2025-12-25T18:54:39.967765-08:00","dependencies":[{"issue_id":"bd-1dez.1","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:05:47.045596-08:00","created_by":"daemon"}]}
@@ -103,6 +104,7 @@
{"id":"bd-3u8m","title":"Create bd admin parent command and nest cleanup/compact/reset","description":"## Task\nCreate new `bd admin` parent command and move:\n- `bd cleanup` → `bd admin cleanup`\n- `bd compact` → `bd admin compact`\n- `bd reset` → `bd admin reset`\n\n## Implementation\n\n### 1. Create admin.go\nNew file with parent command:\n```go\nvar adminCmd = \u0026cobra.Command{\n Use: \"admin\",\n Short: \"Administrative commands for database maintenance\",\n Long: `Administrative commands for beads database maintenance.\n\nThese commands are for advanced users and should be used carefully:\n cleanup Delete closed issues and prune expired tombstones\n compact Compact old closed issues to save space\n reset Remove all beads data and configuration\n\nFor routine operations, prefer 'bd doctor --fix'.`,\n}\n\nfunc init() {\n rootCmd.AddCommand(adminCmd)\n adminCmd.AddCommand(cleanupCmd)\n adminCmd.AddCommand(compactCmd)\n adminCmd.AddCommand(resetCmd)\n}\n```\n\n### 2. Update cleanup.go, compact.go, reset.go\n- Remove `rootCmd.AddCommand()` from each init()\n- Keep all existing functionality\n\n### 3. Create hidden aliases for backwards compatibility\nTop-level hidden commands that forward to admin subcommands.\n\n### 4. Update docs (major updates)\n- docs/CLI_REFERENCE.md - cleanup, compact references\n- docs/QUICKSTART.md - compact, cleanup references\n- docs/FAQ.md - compact references\n- docs/TROUBLESHOOTING.md - compact references\n- docs/DELETIONS.md - compact reference\n- docs/CONFIG.md - compact reference\n- skills/beads/SKILL.md - compact reference\n- commands/compact.md - update all examples\n- examples/compaction/README.md - update examples\n\n## Files to create\n- cmd/bd/admin.go\n\n## Files to modify\n- cmd/bd/cleanup.go\n- cmd/bd/compact.go\n- cmd/bd/reset.go\n- cmd/bd/main.go (aliases)\n- Multiple docs (see list above)\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T15:10:41.836341-08:00","created_by":"mayor","updated_at":"2025-12-27T16:07:30.707323-08:00","closed_at":"2025-12-27T16:07:30.707323-08:00"}
{"id":"bd-3uje","title":"Test issue for pin --for","description":"Testing the pin --for flag","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-22T02:53:43.075522-08:00","updated_at":"2025-12-22T02:54:07.973855-08:00","deleted_at":"2025-12-22T02:54:07.973855-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-20T23:17:26.998785-08:00","closed_at":"2025-12-20T23:17:26.998785-08:00"}
{"id":"bd-3yfs","title":"Session ended: gt-beads-crew-emma","status":"closed","priority":2,"issue_type":"event","created_at":"2026-01-07T00:14:37.947517-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-07T00:14:37.981335-08:00","closed_at":"2026-01-07T00:14:37.981335-08:00","close_reason":"auto-closed session event"}
{"id":"bd-3zm7","title":"bd mol advance: Step through molecule execution","description":"Implement bd mol advance for stepping through molecules.\n\n## Command\n\n```bash\nbd mol advance \u003cmol-id\u003e\n```\n\n## Behavior\n\n1. Load molecule state from .beads/molecules/\u003cmol-id\u003e.state.yaml\n2. Find current step\n3. Mark current step completed\n4. Find next available step (respecting needs/deps)\n5. Update state file\n6. Output next step info (or COMPLETE if done)\n\n## Step State Machine\n\n```\npending → in_progress → completed\n```\n\nWhen advancing:\n- Current step: in_progress → completed\n- Next step: pending → in_progress\n\n## Output\n\n```bash\n$ bd mol advance mol-deacon-patrol\n✓ Step inbox-check completed\n→ Next step: spawn-work\n\nTitle: Spawn polecat for ready work\nDescription: ...\n```\n\nOr if complete:\n```bash\n$ bd mol advance mol-deacon-patrol\n✓ Step self-inspect completed\n✓ Molecule COMPLETE\n\nRun bd mol reset to loop, or gt handoff to cycle.\n```\n\n## Files\n\n- cmd/bd/mol_advance.go\n- internal/mol/state.go","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-24T15:53:31.832867-08:00","updated_at":"2025-12-24T16:53:13.244739-08:00","closed_at":"2025-12-24T16:53:13.244739-08:00","dependencies":[{"issue_id":"bd-3zm7","depends_on_id":"bd-hulf","type":"blocks","created_at":"2025-12-24T15:53:49.233523-08:00","created_by":"daemon"}]}
{"id":"bd-3zzh","title":"Merge: bd-tvu3","description":"branch: polecat/Beader\ntarget: main\nsource_issue: bd-tvu3\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:36:55.016496-08:00","updated_at":"2025-12-23T19:12:08.347363-08:00","closed_at":"2025-12-23T19:12:08.347363-08:00"}
{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"}
@@ -118,10 +120,13 @@
{"id":"bd-4bsb","title":"Code review findings: mol squash deletion bypasses tombstones","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-21T13:57:14.154316-08:00","updated_at":"2025-12-21T18:01:06.811216-08:00","closed_at":"2025-12-21T18:01:06.811216-08:00","dependencies":[{"issue_id":"bd-4bsb","depends_on_id":"bd-2vh3.3","type":"discovered-from","created_at":"2025-12-21T13:57:14.155488-08:00","created_by":"daemon"}]}
{"id":"bd-4bt1","title":"Add gate field to Step schema in formula types","description":"Add Gate field to Step struct in internal/formula/types.go.\n\n## Implementation\n\n```go\ntype Step struct {\n // ... existing fields ...\n \n // Gate defines an async wait condition for this step.\n Gate *GateDef `json:\"gate,omitempty\"`\n}\n\ntype GateDef struct {\n Type string `json:\"type\"` // timer, gh:run, gh:pr, bead, human\n Workflow string `json:\"workflow,omitempty\"` // GitHub workflow name\n Timeout string `json:\"timeout,omitempty\"` // Max wait before escalation\n AwaitID string `json:\"await_id,omitempty\"` // Explicit condition ID\n}\n```\n\n## Acceptance Criteria\n- [ ] GateDef struct defined\n- [ ] Step.Gate field added\n- [ ] TOML and JSON parsing works\n- [ ] Tests for gate field parsing","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-02T13:27:14.449821-08:00","created_by":"mayor","updated_at":"2026-01-04T15:22:08.70007-08:00","closed_at":"2026-01-02T13:43:33.220895-08:00","close_reason":"Added tests for gate field parsing. Gate struct and Step.Gate field already existed. Tests verify JSON and TOML parsing works correctly.","dependencies":[{"issue_id":"bd-4bt1","depends_on_id":"bd-d1n1","type":"parent-child","created_at":"2026-01-02T13:28:06.993383-08:00","created_by":"mayor"}]}
{"id":"bd-4d9d","title":"Test epic for duplicate swarm","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-28T21:56:57.256997-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-29T13:40:29.716788-08:00","closed_at":"2025-12-29T13:40:29.716788-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates"}
{"id":"bd-4dkd","title":"Digest: beads-release","description":"Released beads v0.46.0 - includes v0.45.0 changes (custom types, Gas Town types, gate workflow fixes)","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-07T00:11:29.107016-08:00","updated_at":"2026-01-07T00:11:29.107016-08:00","closed_at":"2026-01-07T00:11:29.106941-08:00","close_reason":"Squashed from 19 wisps","dependencies":[{"issue_id":"bd-4dkd","depends_on_id":"bd-wisp-dj0","type":"parent-child","created_at":"2026-01-07T00:11:29.107726-08:00","created_by":"beads/crew/emma"}]}
{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-4hh5","title":"bd sync false-positive force-push detection","description":"bd sync incorrectly detected a force-push when comparing against a commit from main branch instead of beads-sync.\n\nEvidence:\n- bd sync reported: 'Previous known commit: f4d3f674, Current remote commit: 4d24f794'\n- f4d3f674 is a valid beads-sync commit\n- 4d24f794 is a MAIN branch commit: 'refactor: remove unused isFirstRig param (gt-fugmy)'\n\nRoot cause: bd sync is comparing against wrong branch or storing wrong commit reference.\n\nImpact: False force-push warnings during normal operation, requires manual --accept-rebase.","status":"closed","priority":2,"issue_type":"bug","created_at":"2026-01-04T11:13:45.102272-08:00","created_by":"mayor","updated_at":"2026-01-04T23:11:19.073963-08:00","closed_at":"2026-01-04T23:11:19.073963-08:00","close_reason":"Fixed false-positive force-push detection (bd-4hh5):\n- Changed fetch to use explicit refspec: +refs/heads/beads-sync:refs/remotes/origin/beads-sync\n- This ensures the remote-tracking ref is always created/updated\n- Without explicit refspec, git fetch only updates existing refs, causing stale comparisons\n- The + prefix ensures force-update even for non-fast-forward cases"}
{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-30T15:44:43.343883-08:00"}
{"id":"bd-4jxh","title":"Update agent.go to use labels instead of type","description":"Change agent bead management to use gt:agent label instead of TypeAgent.\n\n## Work\n- Change IssueType=agent to IssueType=task when creating agents\n- Add gt:agent label when creating agent beads\n- Update agent queries to filter by label instead of type\n- Update agent type checks (agent.IssueType != \"agent\") to check label\n\n## Files\n- cmd/bd/agent.go","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:40:20.415469-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:10:18.805675-08:00","closed_at":"2026-01-06T22:10:18.805675-08:00","close_reason":"Migrated agent.go and RPC server to use gt:agent label instead of type","dependencies":[{"issue_id":"bd-4jxh","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.578875-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-4k3c","title":"bd cook creates gate beads for gate steps","description":"When cooking a formula, steps with Gate field create corresponding gate beads.\n\n## Behavior\n1. During cook, detect steps with Gate != nil\n2. Create gate bead with ID: `\u003cmol-id\u003e.gate-\u003cstep-id\u003e`\n3. Gate bead has:\n - issue_type: gate\n - await_type: from Gate.Type\n - await_id: from Gate.AwaitID (or auto-discovered)\n - timeout: from Gate.Timeout\n4. Dependent steps get blocking dep on gate bead\n\n## Example\nStep `await-ci` with gate.type=\"gh:run\" creates:\n- bd-mol-xxx.gate-await-ci (type=gate, await_type=gh:run)\n- bd-mol-xxx.verify-github depends on bd-mol-xxx.gate-await-ci\n\n## Acceptance Criteria\n- [ ] Gate beads created during cook\n- [ ] Correct await_type/await_id populated\n- [ ] Dependent steps blocked by gate\n- [ ] Tests for gate creation","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-02T13:27:14.512549-08:00","created_by":"mayor","updated_at":"2026-01-04T15:22:08.702867-08:00","closed_at":"2026-01-02T13:59:57.696282-08:00","close_reason":"Implementation already existed in cook.go (createGateIssue + collectSteps). Added comprehensive tests in cook_test.go covering: gate issue creation, await_type/await_id population, blocking dependencies, parent-child relationships, and timeout parsing.","dependencies":[{"issue_id":"bd-4k3c","depends_on_id":"bd-4bt1","type":"blocks","created_at":"2026-01-02T13:28:08.39967-08:00","created_by":"mayor"},{"issue_id":"bd-4k3c","depends_on_id":"bd-d1n1","type":"parent-child","created_at":"2026-01-02T13:28:18.575284-08:00","created_by":"mayor"}]}
{"id":"bd-4kp2","title":"Update Obsidian export for removed types","description":"Remove type-to-tag mappings for Gas Town types in Obsidian export.\n\n## Work\n- Remove TypeAgent, TypeRole, TypeRig, TypeConvoy mappings from issueTypeToTag\n- Consider: add label-to-tag mapping for gt:* labels\n\n## Files\n- cmd/bd/export_obsidian.go","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-06T20:40:49.466568-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:12:38.010953-08:00","closed_at":"2026-01-06T22:12:38.010953-08:00","close_reason":"Removed Gas Town type mappings from Obsidian export","dependencies":[{"issue_id":"bd-4kp2","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.708755-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-21T17:52:18.617995-08:00","closed_at":"2025-12-21T17:52:18.617995-08:00","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]}
{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-22T21:01:24.524963-08:00","closed_at":"2025-12-22T21:01:24.524963-08:00"}
{"id":"bd-4nzq","title":"bd create --rig flag for cross-rig issue filing","description":"## Problem\n\nTo create an issue in a different rig, you must cd to that rig's directory. This is clunky when coordinating across rigs.\n\n## Proposed Solution\n\nAdd a --rig flag to bd create that leverages existing routes.jsonl:\n\n```bash\n# From anywhere in town\nbd create --rig beads --title=\"bug report\" --type=bug\n\n# Equivalent to:\ncd ~/gt/beads/mayor/rig \u0026\u0026 bd create --title=\"...\"\n```\n\n## How it works\n\n1. Parse --rig flag (rig name, not prefix)\n2. Look up rig in routes.jsonl to find beads location\n3. Determine prefix from rig config\n4. Create issue in that location with auto-generated ID\n\n## Why elegant\n\n- Leverages existing routing infrastructure\n- Rig names are human-memorable (not cryptic prefixes)\n- Works from anywhere in town\n- Prefix auto-determined from rig config\n- Reads naturally: \"create in beads\"\n\n## Alternative\n\nAlso consider --prefix for power users who know prefixes:\n```bash\nbd create --prefix bd \"Title here\"\n```","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-27T00:39:02.233664-08:00","created_by":"mayor","updated_at":"2025-12-27T00:44:04.079867-08:00","closed_at":"2025-12-27T00:44:04.079867-08:00"}
@@ -155,6 +160,7 @@
{"id":"bd-5s91","title":"CLI API Audit for OSS Launch","description":"Comprehensive CLI API audit before OSS launch.\n\n## Tasks\n1. Review gt command groupings - propose consolidation\n2. Review bd command groupings \n3. Document gt vs bd ownership boundaries\n4. Identify naming inconsistencies\n5. Document flag vs subcommand criteria\n\n## Context\n- Pre-OSS launch cleanup\n- Goal: clean, consistent, discoverable CLI surface","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-25T00:15:41.355013-08:00","updated_at":"2025-12-25T13:26:25.587476-08:00","closed_at":"2025-12-25T13:26:25.587476-08:00"}
{"id":"bd-5x0j","title":"bd swarm status command","description":"Add bd swarm status to show swarm state derived from beads.\n\n## Context\nThis is the key command that demonstrates 'discovery over tracking'. \nSwarm status is COMPUTED from:\n- Epic children statuses\n- Dependency structure\n- Issue assignments\n\nNOT stored separately. If beads changes, status changes.\n\n## Implementation\n1. New command: bd swarm status \u003cswarm-mol-id\u003e\n2. Find linked epic from swarm molecule\n3. Query all children of epic\n4. Compute and display:\n - Ready front (unblocked, open issues)\n - In progress (in_progress status)\n - Completed (closed)\n - Blocked (has unmet dependencies)\n - Progress percentage\n - Coordinator\n - Estimated remaining (based on avg session time)\n\n## Output Format\nReady Front Analysis: gt-epic-xxx\n\nCompleted: ✓ gt-001 (2h ago)\nActive: ⟳ gt-002 [nux], ⟳ gt-003 [toast]\nReady: ○ gt-004, ○ gt-005\nBlocked: ◌ gt-006 (needs 004, 005)\n\nProgress: 1/6 complete, 2/6 active (17%)\n\n## Reference\n~/gt/docs/swarm-architecture.md - 'Ready Front Visualization'\n\n## Acceptance\n- bd swarm status \u003cmol\u003e shows accurate state\n- State reflects current beads (not cached)\n- --json output for programmatic use","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T19:11:36.594118-08:00","created_by":"mayor","updated_at":"2025-12-28T21:28:21.976756-08:00","closed_at":"2025-12-28T21:28:21.976756-08:00","dependencies":[{"issue_id":"bd-5x0j","depends_on_id":"bd-oxgi","type":"blocks","created_at":"2025-12-28T19:11:52.464245-08:00","created_by":"daemon"}]}
{"id":"bd-615z","title":"Add ValidateTemplate() function","description":"Add internal/validation package with ValidateTemplate(issueType, description) that checks for missing sections and returns actionable errors.","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-01T11:19:07.136885-08:00","created_by":"beads/crew/grip","updated_at":"2026-01-01T12:42:26.397143-08:00","closed_at":"2026-01-01T12:42:26.397143-08:00","close_reason":"Implemented ValidateTemplate() and LintIssue() with tests","dependencies":[{"issue_id":"bd-615z","depends_on_id":"bd-ou35","type":"parent-child","created_at":"2026-01-01T11:19:22.71669-08:00","created_by":"beads/crew/grip"},{"issue_id":"bd-615z","depends_on_id":"bd-v2mr","type":"blocks","created_at":"2026-01-01T11:19:23.924134-08:00","created_by":"beads/crew/grip"}]}
{"id":"bd-649s","title":"Add custom type support to beads config","description":"Add types.custom config key mirroring status.custom pattern.\n\n## Work\n- Add CustomTypeConfigKey constant to config.go\n- Add GetCustomTypes() to storage interface \n- Add GetCustomTypes() implementation in sqlite/config.go and memory/memory.go\n- Add IssueType.IsValidWithCustom(customTypes []string) method\n- Update ValidateWithCustomStatuses to ValidateWithCustom (handle both)\n- Update all validation call sites to use GetCustomTypes()\n\n## Files\n- internal/storage/sqlite/config.go\n- internal/storage/storage.go\n- internal/storage/memory/memory.go\n- internal/types/types.go\n- internal/storage/sqlite/queries.go\n- internal/storage/sqlite/transaction.go\n- internal/storage/sqlite/batch_ops.go\n- internal/storage/sqlite/multirepo.go","status":"closed","priority":1,"issue_type":"task","assignee":"beads/crew/dave","created_at":"2026-01-06T20:40:04.168738-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T21:30:02.035131-08:00","closed_at":"2026-01-06T21:30:02.035131-08:00","close_reason":"Implemented custom type support mirroring custom status pattern","dependencies":[{"issue_id":"bd-649s","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.514971-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-66l4","title":"Runtime bonding: bd mol attach","description":"Attach a molecule to an already-running workflow.\n\nCOMMAND: bd mol attach \u003cepic-id\u003e \u003cproto\u003e [--after \u003cissue-id\u003e]\n\nBEHAVIOR:\n- Resolve running epic and proto\n- Spawn proto as new subtree\n- Wire to specified attachment point (or epic root)\n- Handle in-progress issues: new work doesn't block completed work\n\nUSE CASES:\n- Discovered need for docs while implementing feature\n- Hotfix needs attaching to release workflow\n- Additional testing scope identified mid-flight\n\nFLAGS:\n- --after ISSUE: Specific attachment point within epic\n- --type: sequential (default) or parallel\n- --var: Variables for the attached proto\n\nCONSIDERATIONS:\n- What if epic is already closed? Error or reopen?\n- What if attachment point issue is closed? Attach as ready-to-work?","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T00:59:16.920483-08:00","updated_at":"2025-12-21T01:08:43.530597-08:00","closed_at":"2025-12-21T01:08:43.530597-08:00","dependencies":[{"issue_id":"bd-66l4","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.435542-08:00","created_by":"daemon"},{"issue_id":"bd-66l4","depends_on_id":"bd-o91r","type":"blocks","created_at":"2025-12-21T00:59:51.813782-08:00","created_by":"daemon"}]}
{"id":"bd-66w1","title":"Add external_projects to config schema","description":"Add external_projects mapping to .beads/config.yaml:\n\n```yaml\nexternal_projects:\n beads: ../beads\n gastown: ../gastown\n other: /absolute/path/to/project\n```\n\nUsed by bd ready and other commands to resolve external: references.\n\nPart of cross-project dependency system.\nSee: gastown/docs/cross-project-deps.md","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:37:39.245017-08:00","updated_at":"2025-12-21T23:03:19.81448-08:00","closed_at":"2025-12-21T23:03:19.81448-08:00"}
{"id":"bd-687g","title":"Code review: mol squash deletion bypasses tombstone system","description":"The deleteEphemeralChildren function in mol_squash.go uses DeleteIssue directly instead of the proper deletion flow. This bypasses tombstone creation, deletion tracking (deletions.jsonl), and dependency cleanup. Could cause issues with deletion propagation across clones.\n\nCurrent code uses d.DeleteIssue(ctx, id) but should probably use d.DeleteIssues(ctx, ids, false, true, false) for proper tombstone handling.\n\nAlternative: Document that ephemeral issues intentionally use hard delete since they are transient and should never propagate to other clones anyway.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-21T13:57:20.223345-08:00","updated_at":"2025-12-21T14:17:38.073899-08:00","closed_at":"2025-12-21T14:17:38.073899-08:00"}
@@ -211,6 +217,7 @@
{"id":"bd-7t9a","title":"MCP plugin: _find_beads_db_in_tree() should follow .beads/redirect files","description":"## Problem\nThe `_find_beads_db_in_tree()` function in `integrations/beads-mcp/src/beads_mcp/tools.py` does not follow `.beads/redirect` files.\n\n## Impact\nMCP beads tools fail from polecat/crew directories that use redirect files to share a beads database.\n\n## Root Cause\nWhen auto-detecting workspace, the MCP plugin looks for `.beads/*.db` files directly but doesn't check for or follow `redirect` files:\n\n```python\nbeads_dir = os.path.join(current, '.beads')\nif os.path.isdir(beads_dir):\n db_files = glob.glob(os.path.join(beads_dir, '*.db')) # Only looks for .db files\n valid_dbs = [f for f in db_files if '.backup' not in os.path.basename(f)]\n if valid_dbs:\n return current\n```\n\nPolecat directories have `.beads/redirect` files (e.g., containing `../../mayor/rig/.beads`) but no `.db` files, so `_find_beads_db_in_tree()` doesn't find them.\n\n## Expected Behavior\nThe function should:\n1. Check for `.beads/redirect` file first\n2. If found, follow the redirect to the actual beads location\n3. Verify the redirected location has a valid database\n\n## Reference\nThe Go implementation handles this correctly in `ResolveBeadsDir()` - see gastown `internal/beads/beads.go:23-60`.\n\n## Related\n- gt-tnw: MCP beads tools fail from polecat directories","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-29T23:57:21.710278-08:00","created_by":"gastown/polecats/capable","updated_at":"2025-12-30T00:05:38.307967-08:00","closed_at":"2025-12-30T00:05:38.307967-08:00","close_reason":"Fixed: added _resolve_beads_redirect() to follow .beads/redirect files in MCP plugin auto-detection"}
{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]}
{"id":"bd-7wrh","title":"Merge: jasper-1767083473604","description":"branch: polecat/jasper-1767083473604\ntarget: main\nsource_issue: jasper-1767083473604\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T00:39:04.84733-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T00:54:58.805495-08:00","closed_at":"2025-12-30T00:54:58.805495-08:00","close_reason":"Branch polecat/jasper-1767083473604 no longer exists on remote"}
{"id":"bd-7xd7","title":"Update tests for type extraction changes","description":"Update all tests affected by Gas Town type extraction.\n\n## Test files to update\n- internal/types/types_test.go (type validation tests)\n- cmd/bd/agent_routing_test.go (agent type checks)\n- internal/storage/sqlite/sqlite_test.go (convoy tests)\n- internal/validation/bead_test.go (type validation)\n- internal/ui/styles_test.go (style rendering)\n\n## Work\n- Update test cases that use TypeAgent, TypeRole, TypeRig, TypeConvoy, TypeSlot\n- Add tests for custom type support via types.custom config\n- Add tests for label-based filtering","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:40:52.758221-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:17:53.972176-08:00","closed_at":"2026-01-06T22:17:53.972176-08:00","close_reason":"Tests already updated as part of type extraction work","dependencies":[{"issue_id":"bd-7xd7","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.770837-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-7xd7","depends_on_id":"bd-4jxh","type":"blocks","created_at":"2026-01-06T20:41:29.0029-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-7xd7","depends_on_id":"bd-cn56","type":"blocks","created_at":"2026-01-06T20:41:29.039305-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-7xd7","depends_on_id":"bd-16z7","type":"blocks","created_at":"2026-01-06T20:41:29.078573-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-7xd7","depends_on_id":"bd-mgt2","type":"blocks","created_at":"2026-01-06T20:41:29.113145-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-7xd7","depends_on_id":"bd-4kp2","type":"blocks","created_at":"2026-01-06T20:41:29.147522-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-7xd7","depends_on_id":"bd-fen8","type":"blocks","created_at":"2026-01-06T22:06:27.177221-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-7xrg","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-27T18:14:31.190713-08:00","updated_at":"2025-12-30T18:12:30.974709-08:00","closed_at":"2025-12-30T18:11:14.234636-08:00"}
{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-7z4","title":"Add tests for delete operations","description":"Core delete functionality including deleteViaDaemon, createTombstone, and deleteIssue functions have 0% coverage. These are critical for data integrity and need comprehensive test coverage.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T07:00:34.867680882-07:00","updated_at":"2025-12-23T23:48:50.087306-08:00","closed_at":"2025-12-23T23:48:50.087306-08:00","dependencies":[{"issue_id":"bd-7z4","depends_on_id":"bd-6ss","type":"discovered-from","created_at":"2025-12-18T07:00:34.870254935-07:00","created_by":"matt"}]}
@@ -302,12 +309,12 @@
{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-bdc9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh 0.33.2\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.762399-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
{"id":"bd-beads-crew-dave","title":"Crew worker dave in beads - human-managed persistent workspace.","description":"Crew worker dave in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.538389-08:00","created_by":"deacon","updated_at":"2026-01-06T19:30:05.042793-08:00"}
{"id":"bd-beads-crew-emma","title":"Crew worker emma in beads - human-managed persistent workspace.","description":"Crew worker emma in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.604042-08:00","created_by":"deacon","updated_at":"2026-01-06T19:33:57.920083-08:00"}
{"id":"bd-beads-crew-fang","title":"Crew worker fang in beads - human-managed persistent workspace.","description":"Crew worker fang in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.672037-08:00","created_by":"deacon","updated_at":"2026-01-06T19:45:46.418146-08:00"}
{"id":"bd-beads-crew-giles","title":"Crew worker giles in beads - human-managed persistent workspace.","description":"Crew worker giles in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null\nactive_mr: null\nnotification_level: null","status":"open","priority":2,"issue_type":"agent","created_at":"2026-01-04T11:22:11.009942-08:00","created_by":"mayor","updated_at":"2026-01-06T19:45:54.060986-08:00"}
{"id":"bd-beads-crew-grip","title":"Crew worker grip in beads - human-managed persistent workspace.","description":"Crew worker grip in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.739788-08:00","created_by":"deacon","updated_at":"2026-01-06T19:46:01.340112-08:00"}
{"id":"bd-beads-crew-wolf","title":"Crew worker wolf in beads - human-managed persistent workspace.","description":"Crew worker wolf in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.805884-08:00","created_by":"deacon","updated_at":"2026-01-06T19:46:06.984278-08:00"}
{"id":"bd-beads-crew-dave","title":"Crew worker dave in beads - human-managed persistent workspace.","description":"Crew worker dave in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.538389-08:00","created_by":"deacon","updated_at":"2026-01-06T23:28:38.733004-08:00"}
{"id":"bd-beads-crew-emma","title":"Crew worker emma in beads - human-managed persistent workspace.","description":"Crew worker emma in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.604042-08:00","created_by":"deacon","updated_at":"2026-01-06T23:51:55.013518-08:00"}
{"id":"bd-beads-crew-fang","title":"Crew worker fang in beads - human-managed persistent workspace.","description":"Crew worker fang in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.672037-08:00","created_by":"deacon","updated_at":"2026-01-06T23:38:48.953689-08:00"}
{"id":"bd-beads-crew-giles","title":"Crew worker giles in beads - human-managed persistent workspace.","description":"Crew worker giles in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null\nactive_mr: null\nnotification_level: null","status":"open","priority":2,"issue_type":"agent","created_at":"2026-01-04T11:22:11.009942-08:00","created_by":"mayor","updated_at":"2026-01-06T23:28:40.912961-08:00"}
{"id":"bd-beads-crew-grip","title":"Crew worker grip in beads - human-managed persistent workspace.","description":"Crew worker grip in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.739788-08:00","created_by":"deacon","updated_at":"2026-01-06T23:28:42.126799-08:00"}
{"id":"bd-beads-crew-wolf","title":"Crew worker wolf in beads - human-managed persistent workspace.","description":"Crew worker wolf in beads - human-managed persistent workspace.\n\nrole_type: crew\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-crew-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.805884-08:00","created_by":"deacon","updated_at":"2026-01-06T23:28:48.478988-08:00"}
{"id":"bd-beads-polecat-amber","title":"bd-beads-polecat-amber","description":"bd-beads-polecat-amber\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-uuo9\nrole_bead: hq-polecat-role\ncleanup_status: has_stash\nactive_mr: bd-3mky\nnotification_level: null","status":"closed","priority":2,"issue_type":"agent","created_at":"2026-01-04T16:17:26.278115-08:00","created_by":"mayor","updated_at":"2026-01-05T19:45:45.481449-08:00","closed_at":"2026-01-05T19:45:45.481449-08:00","close_reason":"Polecat cleaned up"}
{"id":"bd-beads-polecat-garnet","title":"bd-beads-polecat-garnet","description":"bd-beads-polecat-garnet\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-hmeb\nrole_bead: hq-polecat-role\ncleanup_status: null\nactive_mr: bd-f1xm\nnotification_level: null","status":"closed","priority":2,"issue_type":"agent","created_at":"2026-01-04T15:12:49.812132-08:00","created_by":"mayor","updated_at":"2026-01-05T19:45:45.484195-08:00","closed_at":"2026-01-05T19:45:45.484195-08:00","close_reason":"Polecat cleaned up"}
{"id":"bd-beads-polecat-jasper","title":"bd-beads-polecat-jasper","description":"bd-beads-polecat-jasper\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-oos3\nrole_bead: gt-polecat-role\ncleanup_status: null\nactive_mr: bd-srhu\nnotification_level: null","status":"tombstone","priority":2,"issue_type":"agent","created_at":"2026-01-02T12:41:56.3782-08:00","created_by":"mayor","updated_at":"2026-01-04T11:27:04.41339-08:00","deleted_at":"2026-01-02T16:57:50.038825-08:00","deleted_by":"mayor","delete_reason":"delete","original_type":"agent"}
@@ -319,7 +326,7 @@
{"id":"bd-beads-polecat-ruby","title":"bd-beads-polecat-ruby","description":"bd-beads-polecat-ruby\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-p7i2\nrole_bead: hq-polecat-role\ncleanup_status: has_stash\nactive_mr: bd-j7v7\nnotification_level: null","status":"closed","priority":2,"issue_type":"agent","created_at":"2026-01-04T16:16:58.553407-08:00","created_by":"mayor","updated_at":"2026-01-05T19:45:45.48301-08:00","closed_at":"2026-01-05T19:45:45.48301-08:00","close_reason":"Polecat cleaned up"}
{"id":"bd-beads-polecat-testbot","title":"Agent: bd-beads-polecat-testbot","status":"tombstone","priority":0,"issue_type":"agent","created_at":"2026-01-02T12:24:15.11753-08:00","created_by":"beads/polecats/obsidian","updated_at":"2026-01-02T12:24:57.611128-08:00","labels":["rig:beads","role_type:polecat"],"deleted_at":"2026-01-02T12:24:57.611128-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"agent"}
{"id":"bd-beads-polecat-topaz","title":"bd-beads-polecat-topaz","description":"bd-beads-polecat-topaz\n\nrole_type: polecat\nrig: beads\nagent_state: spawning\nhook_bead: bd-3tqg\nrole_bead: gt-polecat-role\ncleanup_status: null\nactive_mr: bd-ngfl\nnotification_level: null","status":"closed","priority":2,"issue_type":"agent","created_at":"2026-01-04T11:36:03.898913-08:00","created_by":"mayor","updated_at":"2026-01-05T19:45:45.485387-08:00","closed_at":"2026-01-05T19:45:45.485387-08:00","close_reason":"Polecat cleaned up"}
{"id":"bd-beads-refinery","title":"Refinery for beads - processes merge queue.","description":"Refinery for beads - processes merge queue.\n\nrole_type: refinery\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-refinery-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.469888-08:00","created_by":"deacon","updated_at":"2026-01-05T06:49:50.354896-08:00"}
{"id":"bd-beads-refinery","title":"Refinery for beads - processes merge queue.","description":"Refinery for beads - processes merge queue.\n\nrole_type: refinery\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-refinery-role\ncleanup_status: null","status":"open","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.469888-08:00","created_by":"deacon","updated_at":"2026-01-06T23:53:58.624101-08:00"}
{"id":"bd-beads-witness","title":"Witness for beads - monitors polecat health and progress.","description":"Witness for beads - monitors polecat health and progress.\n\nrole_type: witness\nrig: beads\nagent_state: idle\nhook_bead: null\nrole_bead: gt-witness-role\ncleanup_status: null","status":"closed","priority":2,"issue_type":"agent","created_at":"2025-12-30T23:14:04.401378-08:00","created_by":"deacon","updated_at":"2026-01-05T19:45:45.486571-08:00","closed_at":"2026-01-05T19:45:45.486571-08:00","close_reason":"Polecat cleaned up"}
{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"tombstone","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
@@ -362,6 +369,7 @@
{"id":"bd-cj2e","title":"bd update --parent: allow reparenting issues","description":"**Request:** Add `--parent` flag to `bd update` command.\n\n**Use case:** When renaming/migrating an epic (e.g., gt-oki8p → gt-liftoff), need to reparent child issues to the new epic.\n\n**Current workaround:** None clean - must delete and recreate children, or manually edit JSONL.\n\n**Proposed:**\n```bash\nbd update gt-j0gx2 --parent=gt-liftoff\n```\n\n**Note:** `bd create` already has `--parent` flag, so the semantics are established.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-27T21:42:44.396998-08:00","created_by":"mayor","updated_at":"2025-12-27T22:17:12.346147-08:00","closed_at":"2025-12-27T22:17:12.346147-08:00"}
{"id":"bd-cl1o","title":"Merge: obsidian-mjw4b7ph","description":"branch: polecat/obsidian-mjw4b7ph\ntarget: main\nsource_issue: obsidian-mjw4b7ph\nrig: beads\nagent_bead: gt-beads-polecat-obsidian","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2026-01-01T16:17:26.585696-08:00","created_by":"beads/polecats/obsidian","updated_at":"2026-01-01T16:19:26.187-08:00","closed_at":"2026-01-01T16:19:26.187-08:00","close_reason":"Branch dropped during rebase - changes already in main"}
{"id":"bd-cm5g","title":"Merge: basalt-mjtme50i","description":"branch: polecat/basalt-mjtme50i\ntarget: main\nsource_issue: basalt-mjtme50i\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T22:20:38.32952-08:00","created_by":"beads/polecats/basalt","updated_at":"2026-01-01T10:43:18.622647-08:00","closed_at":"2026-01-01T10:43:18.622647-08:00","close_reason":"Stale MR - branch no longer exists on remote"}
{"id":"bd-cn56","title":"Update merge_slot.go to use labels instead of type","description":"Change merge slot bead management to use gt:slot label instead of TypeSlot.\n\n## Work\n- Change IssueType=slot to IssueType=task when creating slots\n- Add gt:slot label when creating slot beads \n\n## Files\n- cmd/bd/merge_slot.go","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:40:21.878624-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:11:03.563553-08:00","closed_at":"2026-01-06T22:11:03.563553-08:00","close_reason":"Migrated merge_slot.go to use gt:slot label instead of type","dependencies":[{"issue_id":"bd-cn56","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.610957-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-cnwx","title":"Refactor mol.go: split 1200+ line file into subcommands","description":"## Problem\n\ncmd/bd/mol.go has grown to 1200+ lines with all molecule subcommands in one file.\n\n## Current State\n- mol.go: 1218 lines (bond, spawn, run, distill, catalog, show, etc.)\n- Hard to navigate, review, and maintain\n\n## Proposed Structure\nSplit into separate files by subcommand:\n```\ncmd/bd/\n├── mol.go # Root command, shared helpers\n├── mol_bond.go # bd mol bond\n├── mol_spawn.go # bd mol spawn \n├── mol_run.go # bd mol run\n├── mol_distill.go # bd mol distill\n├── mol_catalog.go # bd mol catalog\n├── mol_show.go # bd mol show\n└── mol_test.go # Tests (already separate)\n```\n\n## Benefits\n- Easier code review\n- Better separation of concerns\n- Simpler navigation\n- Each subcommand self-contained","status":"closed","priority":2,"issue_type":"chore","created_at":"2025-12-21T11:30:58.832192-08:00","updated_at":"2025-12-21T11:42:49.390824-08:00","closed_at":"2025-12-21T11:42:49.390824-08:00"}
{"id":"bd-co29","title":"Merge: bd-n386","description":"branch: polecat/immortan\ntarget: main\nsource_issue: bd-n386\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:41:45.644113-08:00","updated_at":"2025-12-23T21:21:57.70152-08:00","closed_at":"2025-12-23T21:21:57.70152-08:00"}
{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
@@ -413,6 +421,7 @@
{"id":"bd-eijl","title":"bd ship command for publishing capabilities","description":"Add `bd ship \u003ccapability\u003e` command that:\n\n1. Finds issue with `export:\u003ccapability\u003e` label\n2. Validates issue is closed (or --force to override)\n3. Adds `provides:\u003ccapability\u003e` label\n4. Protects `provides:*` namespace (only bd ship can add these labels)\n\nExample:\n```bash\nbd ship mol-run-assignee\n# Output: Shipped mol-run-assignee (bd-xyz)\n```\n\nPart of cross-project dependency system.\nSee: gastown/docs/cross-project-deps.md","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:37:19.123024-08:00","updated_at":"2025-12-21T23:11:47.498859-08:00","closed_at":"2025-12-21T23:11:47.498859-08:00"}
{"id":"bd-eko4","title":"Add pre-migration orphan cleanup to avoid chicken-and-egg fix failure","description":"## Problem\n\nWhen the database has orphaned foreign key references (dependencies or labels pointing to non-existent issues), the migration invariant check fails, preventing the database from opening. This creates a chicken-and-egg problem:\n\n1. `bd doctor --fix` tries to open the database\n2. Opening triggers migrations with invariant checks\n3. Invariant check fails due to orphaned refs\n4. Fix never runs because database won't open\n\n## Root Cause\n\nAggressive tombstone deletion (e.g., deleting ~1000 old tombstones) left behind orphaned:\n- 218+ dependencies where issue_id not in issues\n- 222+ dependencies where depends_on_id not in issues \n- 30+ labels where issue_id not in issues\n\n## Current Workaround\n\nDirect SQL to clean up before bd can run:\n```sql\nDELETE FROM dependencies WHERE NOT EXISTS (SELECT 1 FROM issues WHERE id = issue_id);\nDELETE FROM dependencies WHERE NOT EXISTS (SELECT 1 FROM issues WHERE id = depends_on_id) AND depends_on_id NOT LIKE 'external:%';\nDELETE FROM labels WHERE NOT EXISTS (SELECT 1 FROM issues WHERE id = issue_id);\n```\n\n## Proposed Fix\n\nAdd a pre-migration cleanup step that runs BEFORE invariant checks:\n1. Option A: Run orphan cleanup as part of migrations (before invariant check)\n2. Option B: Add `bd doctor --force-fix` that bypasses invariant checks\n3. Option C: Have invariant check auto-clean orphans instead of failing\n\nOption A is cleanest - orphan cleanup should be part of normal migration.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-28T23:18:24.65227-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-29T13:46:30.625571-08:00","closed_at":"2025-12-29T13:46:30.625571-08:00","close_reason":"Implemented Option A: CleanOrphanedRefs runs before captureSnapshot in RunMigrations, preventing chicken-and-egg problem"}
{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
{"id":"bd-en43","title":"Evaluate agent fields on Issue struct","description":"Investigate and decide what to do with Gas Town-specific fields on Issue struct.\n\n## Fields to evaluate\n- HookBead (current work on agent's hook)\n- RoleBead (role definition bead)\n- AgentState (idle|running|stuck|stopped)\n- LastActivity (timestamp for timeout detection)\n- RoleType (polecat|crew|witness|refinery|mayor|deacon)\n- Rig (rig name)\n\n## Options\n1. Keep as optional fields (pragmatic, non-breaking)\n2. Move to separate agent_state table (clean but complex)\n3. Store in description/notes as JSON (hacky)\n4. Document as 'extension fields' for now\n\n## Files\n- internal/types/types.go\n- internal/storage/sqlite/migrations/030_agent_fields.go","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:40:50.93332-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:19:20.753048-08:00","closed_at":"2026-01-06T22:19:20.753048-08:00","close_reason":"Decision: Keep agent fields as optional extension fields. They're already in the schema, don't hurt if unused, and Gas Town depends on them. Moving them would be unnecessary complexity.","dependencies":[{"issue_id":"bd-en43","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.739178-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-eph-5h2","title":"beads-release","description":"Beads release workflow","status":"tombstone","priority":2,"issue_type":"epic","created_at":"2025-12-30T21:17:38.213979-08:00","updated_at":"2026-01-04T23:41:06.945589-08:00","close_reason":"Cleanup: stale molecule","deleted_at":"2026-01-01T11:14:44.070596-08:00","deleted_by":"beads/crew/wolf","delete_reason":"misfiled - should have been a wisp","original_type":"epic"}
{"id":"bd-epww","title":"Document pinned status in CLI_REFERENCE.md","description":"## Task\n\nThe `pinned` status is a valid issue status but is not documented in CLI_REFERENCE.md.\n\n## Current Status Values (from types.go:295-301)\n\n- open\n- in_progress\n- blocked\n- deferred\n- closed\n- tombstone\n- **pinned** ← undocumented\n\n## Definition\n\n`StatusPinned Status = \"pinned\" // Persistent bead that stays open indefinitely (bd-6v2)`\n\n## Where to Document\n\nAdd to the 'Issue Types' or create a new 'Issue Statuses' section in docs/CLI_REFERENCE.md.\n\n## Related\n\nThe pinned status is heavily used by gt for hook management (`--status=pinned`).","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T17:12:35.296002-08:00","created_by":"gastown/crew/joe","updated_at":"2025-12-27T19:13:05.640767-08:00","closed_at":"2025-12-27T19:13:05.640767-08:00"}
{"id":"bd-etyv","title":"Smart --var detection for mol distill","description":"Implemented bidirectional syntax support for mol distill --var flag.\n\n**Problem:**\n- spawn uses: --var variable=value (assignment style)\n- distill used: --var value=variable (substitution style)\n- Agents would naturally guess spawn-style for both\n\n**Solution:**\nSmart detection that accepts BOTH syntaxes by checking which side appears in the epic text:\n- --var branch=feature-auth → finds 'feature-auth' in text → works\n- --var feature-auth=branch → finds 'feature-auth' in text → also works\n\n**Changes:**\n- Added parseDistillVar() with smart detection\n- Added collectSubgraphText() helper\n- Restructured runMolDistill to load subgraph before parsing vars\n- Updated help text to document both syntaxes\n- Added comprehensive tests in mol_test.go\n\n**Edge cases handled:**\n- Both sides found: prefers spawn-style (more common guess)\n- Neither found: helpful error message\n- Empty sides: validation error\n- Values containing '=' (e.g., KEY=VALUE): works via SplitN\n\nEmbodies the Beads philosophy: watch what agents do, make their guess correct.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T11:08:50.83923-08:00","updated_at":"2025-12-21T11:08:56.432536-08:00","closed_at":"2025-12-21T11:08:56.432536-08:00"}
@@ -434,10 +443,12 @@
{"id":"bd-fa1q","title":"bd swarm create command","description":"Add bd swarm create to create a swarm molecule from an epic.\n\n## Context\nSwarms ARE persistent molecules - not separate JSON state. This command creates\na swarm molecule that:\n- Links to the epic it orchestrates\n- Has mol_type=swarm\n- Specifies a coordinator\n- Can be discovered by any agent\n\n## Core Principle: Discovery Over Tracking\nThe swarm molecule doesn't track step-by-step state. Instead:\n- Query bd ready --parent=\u003cepic\u003e to find the ready front\n- Query bd list --parent=\u003cepic\u003e --status=closed to find completed\n- Derive progress from children's statuses\n\n## Implementation\n1. New command: bd swarm create \u003cepic-id\u003e [--coordinator=\u003caddr\u003e]\n2. Validate epic structure first (call bd swarm validate)\n3. Create molecule bead:\n - mol_type: swarm\n - epic: \u003cepic-id\u003e\n - coordinator: \u003caddr\u003e\n - status: open\n4. Return the swarm molecule ID\n\n## Single-Issue Wrapping\nIf given a single issue (not epic), auto-wrap:\n- Create an epic with that issue as child\n- Then create swarm molecule\n\n## Reference\n~/gt/docs/swarm-architecture.md - 'Swarm Structure' section\n\n## Acceptance\n- bd swarm create \u003cepic\u003e creates a swarm molecule\n- Molecule has mol_type=swarm\n- Links to epic via epic field\n- Validates structure before creation","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T19:11:35.067432-08:00","created_by":"mayor","updated_at":"2025-12-28T21:34:32.026937-08:00","closed_at":"2025-12-28T21:34:32.026937-08:00","dependencies":[{"issue_id":"bd-fa1q","depends_on_id":"bd-oxgi","type":"blocks","created_at":"2025-12-28T19:11:52.428038-08:00","created_by":"daemon"},{"issue_id":"bd-fa1q","depends_on_id":"bd-nkqx","type":"blocks","created_at":"2025-12-28T19:11:52.446532-08:00","created_by":"daemon"}]}
{"id":"bd-fa2h","title":"🤝 HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate → bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-21T17:52:18.467069-08:00","closed_at":"2025-12-21T17:52:18.467069-08:00"}
{"id":"bd-fber","title":"Work on gt-8tmz.31: Formula validation specification. Wri...","description":"Work on gt-8tmz.31: Formula validation specification. Write docs/formula-validation.md specifying all validation rules for formulas. When done: 1) bd close gt-8tmz.31, 2) bd sync, 3) git push, 4) gt mq submit","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T19:26:36.741916-08:00","updated_at":"2025-12-25T19:32:10.788141-08:00","closed_at":"2025-12-25T19:32:10.788141-08:00"}
{"id":"bd-fbkd","title":"Gate check should auto-discover non-numeric await_id","description":"When `bd gate check` encounters a gh:run gate with a non-numeric await_id (workflow name hint like 'release.yml'), it currently returns:\n\n```\nawaiting discovery (workflow hint: release.yml) - run 'bd gate discover'\n```\n\nThis requires manual intervention. The fix committed in 8528fcaa added the message, but didn't add auto-discovery.\n\n**Proposal:** `checkGHRun` should automatically call the discovery logic when it encounters a workflow name hint, rather than requiring a separate command.\n\n**Why this matters:**\n- The beads-release formula creates gates with `id = 'release.yml'`\n- Agents running the formula shouldn't need to know about the discover command\n- The chicken-and-egg problem: you can't release the version that fixes the release process\n\n**Implementation:**\n1. In `checkGHRun`, when `!isNumericID(gate.AwaitID)`:\n - Query recent GitHub runs\n - Match using `workflowNameMatches`\n - Auto-update the gate's await_id\n - Then proceed with the normal check","status":"open","priority":1,"issue_type":"feature","created_at":"2026-01-07T00:20:21.829762-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-07T00:20:21.829762-08:00"}
{"id":"bd-fbl9","title":"Test parent task","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T23:26:53.012747-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-27T23:27:40.44858-08:00","closed_at":"2025-12-27T23:27:40.44858-08:00"}
{"id":"bd-fcl1","title":"Merge: bd-au0.5","description":"branch: polecat/Searcher\ntarget: main\nsource_issue: bd-au0.5\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:39:11.946667-08:00","updated_at":"2025-12-23T19:12:08.346454-08:00","closed_at":"2025-12-23T19:12:08.346454-08:00"}
{"id":"bd-fedb","title":"Polecats should spawn with auto-accept mode enabled","description":"During swarm bd-784c, polecats (Toast, Nux) were spawned without --dangerously-skip-permissions or equivalent auto-accept mode.\n\n**Problem:**\nEvery edit, bash command, and tool use required manual confirmation via tmux send-keys. This defeats the purpose of autonomous polecat operation.\n\n**Expected:**\nPolecats in a swarm should run with permissions bypassed so they can work autonomously.\n\n**Workaround used:**\n- Manually sent Enter keys via tmux to accept prompts\n- Eventually polecats entered 'bypass permissions on' mode after restart\n\n**Suggestion:**\n- gt sling should pass --dangerously-skip-permissions by default for polecats\n- Or polecats should have a .claude/settings.local.json pre-configured for auto-accept","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-28T16:17:47.061327-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T22:14:19.109728-08:00","closed_at":"2025-12-28T22:14:19.109728-08:00"}
{"id":"bd-fej5","title":"bd hook: detect agent from cwd instead of defaulting to $USER","description":"**Problem:**\n`bd hook` without `--agent` defaults to `$USER` (e.g., \"stevey\") instead of detecting the agent identity from the current working directory.\n\n**Expected behavior:**\nWhen running from `/Users/stevey/gt/beads/crew/dave`, the agent should be detected as `beads/crew/dave`.\n\n**Current behavior:**\n```bash\n$ pwd\n/Users/stevey/gt/beads/crew/dave\n$ bd hook\nHook: stevey\n (empty)\n\n$ bd hook --agent beads/crew/dave\nHook: beads/crew/dave\n 📌 bd-hobo (mol) - open\n```\n\n**Fix:**\nbd hook should use the same cwd-based agent detection that other commands use (similar to how `gt mail` determines identity from cwd).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-24T20:01:27.613892-08:00","updated_at":"2025-12-25T12:41:10.65257-08:00","closed_at":"2025-12-25T12:41:10.65257-08:00"}
{"id":"bd-fen8","title":"Remove Gas Town types from IssueType enum","description":"Remove agent, role, rig, convoy, slot from built-in IssueType constants.\n\n## Work\n- Remove TypeAgent, TypeRole, TypeRig, TypeConvoy, TypeSlot constants\n- Update IsValid() switch statement to remove these types\n- Update RequiredSections() to remove agent/role/convoy references in default case comment\n\n## Files\n- internal/types/types.go","status":"closed","priority":1,"issue_type":"task","created_at":"2026-01-06T20:40:18.97767-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:17:27.356036-08:00","closed_at":"2026-01-06T22:17:27.356036-08:00","close_reason":"Removed Gas Town types (agent, role, rig, convoy, slot) from IssueType enum and updated all tests","dependencies":[{"issue_id":"bd-fen8","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.547683-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-fen8","depends_on_id":"bd-649s","type":"blocks","created_at":"2026-01-06T20:41:20.894067-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-fen8","depends_on_id":"bd-16z7","type":"blocks","created_at":"2026-01-06T22:06:03.350893-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-fen8","depends_on_id":"bd-4jxh","type":"blocks","created_at":"2026-01-06T22:06:03.379232-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-fen8","depends_on_id":"bd-cn56","type":"blocks","created_at":"2026-01-06T22:06:03.40727-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-fen8","depends_on_id":"bd-4kp2","type":"blocks","created_at":"2026-01-06T22:06:15.543349-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-fen8","depends_on_id":"bd-mgt2","type":"blocks","created_at":"2026-01-06T22:06:15.571831-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-ffjt","title":"Unify template.go and mol.go under bd mol","description":"Consolidate the two DAG-template systems into one under the mol command. mol.go (on rictus branch) has the right UX (catalog/show/bond), template.go has the mechanics. Merge them, deprecate bd template commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T23:52:13.208972-08:00","updated_at":"2025-12-21T00:01:59.283765-08:00","closed_at":"2025-12-21T00:01:59.283765-08:00"}
{"id":"bd-ffp5","title":"Review PR #908: feat(doctor) external hook managers","description":"dispatched_by: beads/crew/emma\n\nReview and merge PR #908 from roelofb.\n\nPR: https://github.com/anthropics/beads/pull/908\nChanges: +1364/-5, 4 files (doctor/fix/hooks.go, hooks_test.go, git.go, CHANGELOG.md)\n\nFeature: detect external hook managers and check bd integration\n\nReview checklist:\n- [ ] Code quality and style\n- [ ] Tests pass\n- [ ] Feature works as intended\n- [ ] Approve or request changes","status":"closed","priority":2,"issue_type":"task","assignee":"beads/crew/giles","created_at":"2026-01-05T19:09:22.112242-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-05T19:12:29.744463-08:00","closed_at":"2026-01-05T19:12:29.744463-08:00","close_reason":"PR #908 reviewed, approved, and merged"}
{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]}
@@ -454,6 +465,7 @@
{"id":"bd-g7ay","title":"Merge: obsidian-mjwn3dvc","description":"branch: polecat/obsidian-mjwn3dvc\ntarget: main\nsource_issue: obsidian-mjwn3dvc\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2026-01-02T02:03:39.189973-08:00","created_by":"mayor","updated_at":"2026-01-02T13:41:56.629738-08:00","closed_at":"2026-01-02T13:41:56.629738-08:00","close_reason":"Branches merged, cleaning up stale MR beads"}
{"id":"bd-g7eq","title":"Agent beads: structured labels for filtering","description":"## Agent Beads Need Queryable Labels\n\nCurrently agent beads have role_type/rig in description text, not as labels. This breaks @group resolution in gt mail.\n\n## Current State\n\n```json\n{\n \"id\": \"gt-gastown-witness\",\n \"issue_type\": \"agent\",\n \"description\": \"...\\\\nrole_type: witness\\\\nrig: gastown\\\\n...\"\n}\n```\n\nCannot query: `bd list --type=agent --label=role_type:witness` returns nothing.\n\n## Required\n\nAgent bead creation should add labels:\n- `role_type:\u003ctype\u003e` (witness, refinery, crew, polecat, dog, mayor, deacon)\n- `rig:\u003crig\u003e` (gastown, beads, or \"town\" for town-level)\n\n## Where to Fix\n\ngt polecat/crew/agent creation commands should add labels:\n```bash\nbd create --type=agent ... --labels=\"role_type:witness,rig:gastown\"\n```\n\n## Queries Enabled\n\n```bash\nbd list --type=agent --label=role_type:witness # All witnesses\nbd list --type=agent --label=rig:gastown # All gastown agents\nbd list --type=agent --label=role_type:dog # All dogs\n```\n\n## Acceptance\n- New agent beads created with role_type/rig labels\n- Existing agent beads backfilled (one-time script)\n- @group patterns work in gt mail router","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-29T20:47:33.950733-08:00","created_by":"gastown/crew/joe","updated_at":"2025-12-29T21:16:00.746383-08:00","closed_at":"2025-12-29T21:16:00.746383-08:00","close_reason":"Implemented: role_type/rig labels for agent beads, auto-labeling on create/update, backfill command"}
{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-12-23T23:49:49.11706-08:00","closed_at":"2025-12-23T23:49:49.11706-08:00"}
{"id":"bd-gc9r","title":"Session ended: gt-beads-crew-emma","status":"closed","priority":2,"issue_type":"event","created_at":"2026-01-07T00:11:45.467727-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-07T00:11:45.50256-08:00","closed_at":"2026-01-07T00:11:45.50256-08:00","close_reason":"auto-closed session event"}
{"id":"bd-gfo3","title":"Merge: bd-ykd9","description":"branch: polecat/Doctor\ntarget: main\nsource_issue: bd-ykd9\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T13:34:43.778808-08:00","updated_at":"2025-12-23T19:12:08.353427-08:00","closed_at":"2025-12-23T19:12:08.353427-08:00"}
{"id":"bd-gigi","title":"bd admin compact --older-than=0 ignores the flag, uses default 30 days","description":"When running bd admin compact --prune --older-than=0, the output says 'No expired tombstones to prune (TTL: 30 days)' - the flag value is ignored.\n\nRoot cause: In runCompactPrune() in compact_tombstone.go:180, the check 'if compactOlderThan \u003e 0' means that --older-than=0 is treated the same as not passing the flag, defaulting to 30 days.\n\nFix: Change the default flag value in compact.go:785 to -1 (sentinel for 'use default'), and treat 0 as 'expire all tombstones' by passing a negative TTL to pruneExpiredTombstones().\n\nMoved from gt-65gwa (gastown) - was filed in wrong rig.","status":"closed","priority":2,"issue_type":"bug","assignee":"beads/crew/emma","created_at":"2025-12-29T23:34:41.255352-08:00","created_by":"gastown/polecats/dementus","updated_at":"2025-12-30T00:00:43.476085-08:00","closed_at":"2025-12-30T00:00:43.476085-08:00","close_reason":"Fixed: flag default changed to -1 sentinel, 0 now means expire all"}
{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"}
@@ -497,7 +509,7 @@
{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]}
{"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T23:17:26.993744-08:00","closed_at":"2025-12-20T23:17:26.993744-08:00"}
{"id":"bd-i3ed","title":"Refactor bd setup to recipe-based architecture (GH#898)","description":"## Summary\n\nReplace tool-specific setup commands (cursor, claude, etc.) with a generic recipe-based system. New tools become config entries, not code changes.\n\n## Motivation\n\nGH#898 requests Kilo Code integration. Current approach requires new Go code for each tool:\n- `cmd/bd/setup/cursor.go`\n- `cmd/bd/setup/kilocode.go` (proposed)\n- `cmd/bd/setup/windsurf.go` (future?)\n- ...\n\nThis does not scale. All these integrations do the same thing:\n1. Generate markdown content (beads workflow instructions)\n2. Write to tool-specific path\n\nThe **content** is identical. Only the **destination path** varies.\n\n## Design\n\n### Core Insight\n\nBeads does not need to know anything about Kilo Code, Cursor, or Claude Code beyond where they read their rules files. That is a path mapping—data, not code.\n\n### Recipe Format\n\n```toml\n# .beads/recipes.toml (user additions/overrides)\n[cursor]\npath = \".cursor/rules/bd.md\"\n\n[claude]\npath = \"CLAUDE.md\"\n\n[kilocode]\npath = \".kilocode/rules/bd.md\"\n\n[my-custom-editor]\npath = \".myeditor/config/bd.md\"\n```\n\n### Built-in Defaults\n\nShip sensible defaults compiled into binary:\n- cursor → `.cursor/rules/bd.md`\n- claude → `CLAUDE.md`\n- windsurf → `.windsurf/rules/bd.md`\n- cody → `.cody/rules/bd.md` (verify path)\n\nUser file overrides/extends built-in defaults.\n\n### Commands\n\n| Command | Description |\n|---------|-------------|\n| `bd setup \u003crecipe\u003e` | Write template to recipe path |\n| `bd setup --list` | Show available recipes (built-in + user) |\n| `bd setup --print` | Dump template to stdout |\n| `bd setup -o \u003cpath\u003e` | Write to arbitrary path (escape hatch) |\n| `bd setup \u003crecipe\u003e --check` | Verify if installed |\n| `bd setup \u003crecipe\u003e --remove` | Delete the file |\n| `bd setup --add \u003cname\u003e \u003cpath\u003e` | Save custom recipe |\n\n### Template\n\nSingle markdown template embedded in binary. Contains:\n- What beads is\n- Key commands (`bd ready`, `bd create`, `bd close`, etc.)\n- Workflow guidance\n- JSON flags for programmatic use\n\n### Implementation Plan\n\n1. Add `--print` and `-o` flags to existing setup command\n2. Create `internal/recipes/` package\n - Built-in recipes (Go map or embed)\n - Load/merge user `.beads/recipes.toml`\n3. Refactor `cmd/bd/setup/setup.go` to use recipes\n4. Remove tool-specific files (`cursor.go`, etc.)\n5. Add `--add` command to save custom recipes\n6. Update documentation\n\n### Migration\n\nExisting `bd setup cursor` continues to work—just backed by recipe lookup instead of dedicated code.\n\n## Out of Scope (for now)\n\n- `--global` flag (user-level config paths) — use `-o` escape hatch\n- `mode: append` (add to existing file) — wait until requested\n- GitHub recipe registry — overkill for path mappings\n- TOML migration for config.yaml — separate initiative\n\n## Response to GH#898\n\nOnce implemented, respond to PR:\n\n\u003e Thanks for the contribution! We are refactoring `bd setup` to a recipe-based approach where new tools are config entries, not code changes.\n\u003e\n\u003e Instead of new Go files, please submit a PR adding Kilo Code to the built-in recipes in `internal/recipes/builtin.go` (or equivalent). Happy to help if you have questions!\n\n## References\n\n- GH#898: Kilo Code integration request\n- Current setup code: `cmd/bd/setup/`\n","status":"closed","priority":1,"issue_type":"feature","created_at":"2026-01-04T20:05:44.32166-08:00","created_by":"beads/crew/fang","updated_at":"2026-01-04T21:57:21.225792-08:00","closed_at":"2026-01-04T21:57:21.225792-08:00","close_reason":"Implemented recipe-based architecture for bd setup"}
{"id":"bd-i54l","title":"Extract Gas Town-specific issue types from beads core","description":"## Problem\n\nBeads has accumulated issue types that are specific to Gas Town's orchestration model:\n\n```go\nTypeAgent IssueType = \"agent\" // Agent identity bead\nTypeRole IssueType = \"role\" // Agent role definition \nTypeRig IssueType = \"rig\" // Rig identity bead (project container)\nTypeConvoy IssueType = \"convoy\" // Cross-project tracking\nTypeSlot IssueType = \"slot\" // Exclusive access slot (merge-slot gate)\n```\n\nThis violates separation of concerns. Beads is supposed to be a **generic AI-friendly issue tracker** that Gas Town happens to use - not \"Gas Town's issue tracker.\"\n\n## Impact\n\n- **Credibility**: Beads can't be presented as a standalone tool when it has hardcoded knowledge of a specific orchestration system\n- **Coupling**: Changes to Gas Town's identity model require beads releases\n- **Confusion**: Users outside Gas Town see types that don't apply to them\n\n## Solution\n\n### Option A: Labels instead of types\nGas Town uses labels like `gt:agent`, `gt:role`, `gt:rig` instead of dedicated types. Beads stays generic.\n\n### Option B: Type extension mechanism\nBeads supports custom type registration via config. Gas Town registers its types at init time.\n\n### Option C: Separate identity store\nGas Town maintains agent/role/rig identity outside beads entirely. Beads only tracks work items.\n\n## Types to evaluate\n\n| Type | Keep in beads? | Rationale |\n|------|----------------|-----------|\n| `gate` | Yes | Generic workflow concept (async waits) |\n| `molecule` | Yes | Generic workflow templates |\n| `agent` | **No** | Gas Town identity |\n| `role` | **No** | Gas Town identity |\n| `rig` | **No** | Gas Town identity |\n| `convoy` | **No** | Gas Town cross-rig tracking |\n| `slot` | Maybe | Could be generic \"mutex\" concept |\n\n## Files affected\n\n- `internal/types/types.go` - Type definitions\n- `cmd/bd/create.go` - Type validation\n- `cmd/bd/update.go` - Type validation \n- `internal/storage/sqlite/migrations/030_agent_fields.go` - Schema fields\n- Possibly others with type switch statements","status":"open","priority":1,"issue_type":"bug","created_at":"2026-01-06T20:26:52.332746-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T20:26:52.332746-08:00"}
{"id":"bd-i54l","title":"Extract Gas Town-specific issue types from beads core","description":"dispatched_by: beads/crew/dave\n\n## Problem\n\nBeads has accumulated issue types that are specific to Gas Town's orchestration model:\n\n```go\nTypeAgent IssueType = \"agent\" // Agent identity bead\nTypeRole IssueType = \"role\" // Agent role definition \nTypeRig IssueType = \"rig\" // Rig identity bead (project container)\nTypeConvoy IssueType = \"convoy\" // Cross-project tracking\nTypeSlot IssueType = \"slot\" // Exclusive access slot (merge-slot gate)\n```\n\nThis violates separation of concerns. Beads is supposed to be a **generic AI-friendly issue tracker** that Gas Town happens to use - not \"Gas Town's issue tracker.\"\n\n## Impact\n\n- **Credibility**: Beads can't be presented as a standalone tool when it has hardcoded knowledge of a specific orchestration system\n- **Coupling**: Changes to Gas Town's identity model require beads releases\n- **Confusion**: Users outside Gas Town see types that don't apply to them\n\n## Solution\n\n### Option A: Labels instead of types\nGas Town uses labels like `gt:agent`, `gt:role`, `gt:rig` instead of dedicated types. Beads stays generic.\n\n### Option B: Type extension mechanism\nBeads supports custom type registration via config. Gas Town registers its types at init time.\n\n### Option C: Separate identity store\nGas Town maintains agent/role/rig identity outside beads entirely. Beads only tracks work items.\n\n## Types to evaluate\n\n| Type | Keep in beads? | Rationale |\n|------|----------------|-----------|\n| `gate` | Yes | Generic workflow concept (async waits) |\n| `molecule` | Yes | Generic workflow templates |\n| `agent` | **No** | Gas Town identity |\n| `role` | **No** | Gas Town identity |\n| `rig` | **No** | Gas Town identity |\n| `convoy` | **No** | Gas Town cross-rig tracking |\n| `slot` | Maybe | Could be generic \"mutex\" concept |\n\n## Files affected\n\n- `internal/types/types.go` - Type definitions\n- `cmd/bd/create.go` - Type validation\n- `cmd/bd/update.go` - Type validation \n- `internal/storage/sqlite/migrations/030_agent_fields.go` - Schema fields\n- Possibly others with type switch statements","status":"closed","priority":1,"issue_type":"epic","assignee":"beads/crew/dave","created_at":"2026-01-06T20:26:52.332746-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:19:33.376638-08:00","closed_at":"2026-01-06T22:19:33.376638-08:00","close_reason":"Core type extraction complete. All Gas Town types (agent, role, rig, convoy, slot) removed from beads core and replaced with label-based identification. Remaining task bd-jybi is a data migration for existing beads, which is a deployment concern.","labels":["architecture","separation-of-concerns"]}
{"id":"bd-i5l","title":"Witness Patrol","description":"Per-rig worker monitor patrol loop with progressive nudging.","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T21:20:47.650732-08:00","created_by":"deacon","updated_at":"2025-12-27T00:10:54.176287-08:00","deleted_at":"2025-12-27T00:10:54.176287-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
{"id":"bd-i7a6","title":"Test actor flag","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-26T20:47:28.470006-08:00","updated_at":"2025-12-28T09:26:06.084894-08:00","closed_at":"2025-12-28T09:26:06.084894-08:00"}
{"id":"bd-ia3g","title":"BondRef.ProtoID field name is misleading for mol+mol bonds","description":"In bondMolMol, the BondRef.ProtoID field is used to store molecule IDs:\n\n```go\nBondedFrom: append(molA.BondedFrom, types.BondRef{\n ProtoID: molB.ID, // This is a molecule, not a proto\n ...\n})\n```\n\nThis is semantically confusing since ProtoID suggests it should only hold proto references.\n\n**Options:**\n1. Rename ProtoID to SourceID (breaking change, needs migration)\n2. Add documentation clarifying ProtoID can hold molecule IDs in bond context\n3. Leave as-is, accept the naming is imprecise\n\nLow priority since it's just naming, not functionality.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T10:23:00.755067-08:00","updated_at":"2025-12-30T15:44:43.355533-08:00","closed_at":"2025-12-30T00:40:56.399444-08:00","close_reason":"Merged via refinery"}
@@ -523,6 +535,7 @@
{"id":"bd-is6m","title":"Add gate checking to Deacon patrol loop","description":"Integrate gate checking into Deacon's patrol cycle.\n\n## Patrol Integration\n```go\nfunc (d *Deacon) checkGates(ctx context.Context) {\n gates, _ := d.store.ListOpenGates(ctx)\n \n for _, gate := range gates {\n // Check timeout\n if time.Since(gate.CreatedAt) \u003e gate.Timeout {\n d.notifyWaiters(gate, \"timeout\")\n d.closeGate(gate, \"timed out\")\n continue\n }\n \n // Check condition\n if d.checkCondition(gate.AwaitType, gate.AwaitID) {\n d.notifyWaiters(gate, \"cleared\")\n d.closeGate(gate, \"condition met\")\n }\n }\n}\n```\n\n## Note\nThis task is in Gas Town (gt), not beads. May need to be moved there.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:36.839709-08:00","updated_at":"2025-12-23T12:19:44.204647-08:00","closed_at":"2025-12-23T12:19:44.204647-08:00","dependencies":[{"issue_id":"bd-is6m","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.909253-08:00","created_by":"daemon"},{"issue_id":"bd-is6m","depends_on_id":"bd-u66e","type":"blocks","created_at":"2025-12-23T11:44:56.428084-08:00","created_by":"daemon"}]}
{"id":"bd-it19","title":"Code smell: show.go is 1592 lines - needs splitting","description":"cmd/bd/show.go is 1592 lines mixing data fetching, transformation, output formatting, and thread reconstruction.\n\n**Problem:**\n- Too large to understand and maintain\n- Poor separation of concerns\n- Hard to test individual components\n\n**Acceptance Criteria:**\n- [ ] Extract formatting into show_formatter.go\n- [ ] Extract thread reconstruction into show_threads.go\n- [ ] Each file under 500 lines\n- [ ] No functionality changes\n- [ ] Tests pass","status":"closed","priority":2,"issue_type":"chore","created_at":"2025-12-28T18:59:00.865612-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T19:01:18.42196-08:00","closed_at":"2025-12-28T19:01:18.42196-08:00","dependencies":[{"issue_id":"bd-it19","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.61907-08:00","created_by":"daemon"}]}
{"id":"bd-iutu","title":"Test comment display","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T17:50:24.269413-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T17:53:39.950742-08:00","comments":[{"id":5,"issue_id":"bd-iutu","author":"beads/crew/dave","text":"This is a test comment","created_at":"2025-12-28T01:50:30Z"}],"deleted_at":"2025-12-27T17:53:39.950742-08:00","deleted_by":"beads/crew/dave","delete_reason":"manual delete","original_type":"task"}
{"id":"bd-iw11","title":"Fix TestCheckMetadataVersionTracking test threshold","description":"The test 'TestCheckMetadataVersionTracking/slightly_outdated_version' fails because:\n\n- Test uses version 0.35.0 as 'slightly outdated'\n- Current version is 0.45.0 (10 minor versions ahead)\n- The 'slightly outdated' threshold has been exceeded, so it now reports 'very old'\n\nThe test's version threshold needs updating, or the threshold logic needs adjusting.\n\n## Error\n```\ndoctor_test.go:984: Expected status ok, got warning (message: Last recorded version is very old: 0.35.0 (current: 0.45.0))\n```\n\n## Fix options\n1. Update test version from 0.35.0 to 0.43.0 (within threshold)\n2. Make test threshold calculation relative to current version","status":"closed","priority":3,"issue_type":"bug","created_at":"2026-01-06T22:47:02.397237-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-06T23:31:14.785508-08:00","closed_at":"2026-01-06T23:31:14.785508-08:00","close_reason":"Fixed by updating test version from 0.35.0 to 0.43.0"}
{"id":"bd-iw4z","title":"Compound visualization in bd mol show","description":"Enhance bd mol show to display compound structure.\n\nENHANCEMENTS:\n- Show constituent protos and how they're bonded\n- Display bond type (sequential/parallel) between components\n- Indicate attachment points\n- Show combined variable requirements across all protos\n\nEXAMPLE OUTPUT:\n\n Compound: proto-feature-with-tests\n Bonded from:\n └─ proto-feature (root)\n └─ proto-testing (sequential, after completion)\n \n Variables: {{name}}, {{version}}, {{test_suite}}\n \n Structure:\n proto-feature-with-tests\n ├─ Design feature {{name}}\n ├─ Implement core\n ├─ Write unit tests ← from proto-testing\n └─ Run test suite {{test_suite}} ← from proto-testing","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T00:59:26.71318-08:00","updated_at":"2026-01-02T13:42:51.390118-08:00","closed_at":"2026-01-02T13:42:51.390118-08:00","close_reason":"Implemented compound visualization in mol show. Added showCompoundBondingInfo() to display bonded-from lineage with bond types. Updated both showMolecule() and showMoleculeWithParallel() to detect compounds and show the 'Bonded from:' section. Added JSON output fields is_compound and bonded_from. Added unit tests for IsCompound(), GetConstituents(), and formatBondType().","dependencies":[{"issue_id":"bd-iw4z","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.500865-08:00","created_by":"daemon"},{"issue_id":"bd-iw4z","depends_on_id":"bd-rnnr","type":"blocks","created_at":"2025-12-21T00:59:51.891643-08:00","created_by":"daemon"}]}
{"id":"bd-iz5t","title":"Swarm: 13 beads backlog issues for polecat execution","description":"## Swarm Overview\n\n13 issues prepared for parallel polecat execution. All issues have been enhanced with concrete implementation guidance, file lists, and success criteria.\n\n## Issue List\n\n### Bug (1) - HIGH PRIORITY\n| ID | Priority | Title |\n|----|----------|-------|\n| bd-phtv | P1 | Pinned field overwritten by subsequent commands |\n\n### Test Coverage (3)\n| ID | Package | Target |\n|----|---------|--------|\n| bd-io8c | internal/syncbranch | 27% → 70% |\n| bd-thgk | internal/compact | 17% → 70% |\n| bd-tvu3 | internal/beads | 48% → 70% |\n\n### Code Quality (3)\n| ID | Task |\n|----|------|\n| bd-qioh | FatalError pattern standardization |\n| bd-rgyd | Split queries.go (1704 lines → 5 files) |\n| bd-u2sc.3 | Split cmd/bd files (sync/init/show/compact) |\n\n### Features (4)\n| ID | Task |\n|----|------|\n| bd-au0.5 | Search date/priority filters |\n| bd-ykd9 | Doctor --fix auto-repair |\n| bd-g4b4 | Close hooks system |\n| bd-likt | Gate daemon RPC |\n\n### Polish (2)\n| ID | Task |\n|----|------|\n| bd-4qfb | Doctor output formatting |\n| bd-u2sc.4 | slog structured logging |\n\n## Issue Details\n\nAll issues have been enhanced with:\n- Concrete file lists to modify\n- Code snippets and patterns\n- Success criteria\n- Test commands\n\nRun `bd show \u003cid\u003e` for full details on any issue.\n\n## Execution Notes\n\n- All issues are independent (no blockers between them)\n- bd-phtv (P1 bug) should get priority - affects bd pin functionality\n- Test coverage tasks are straightforward but time-consuming\n- File split tasks (bd-rgyd, bd-u2sc.3) are mechanical but important\n\n## Completed During Prep\n\n- bd-ucgz (P2 bug) - Fixed inline: external deps orphan check (commit f2db0a1d)\n- Moved 5 gastown issues out of beads backlog (gt-dh65, gt-ng6g, gt-fqcz, gt-gswn, gt-rw2z)\n- Deferred 4 premature/post-1.0 issues\n- Closed bd-udsi epic (core implementation complete)","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-23T12:43:58.427835-08:00","updated_at":"2025-12-23T20:26:50.629471-08:00","closed_at":"2025-12-23T20:26:50.629471-08:00"}
{"id":"bd-j0tr","title":"Phase 1.3: Basic TOON read/write operations","description":"Add basic TOON read/write operations to bdt executable. Implement create, list, and show commands that use the internal/toon package for encoding/decoding to TOON format.\n\n## Subtasks\n1. Implement bdt create command - Create issues and serialize to TOON format\n2. Implement bdt list command - Read issues.toon and display all issues\n3. Implement bdt show command - Display single issue by ID\n4. Add file I/O operations for issues.toon\n5. Integrate internal/toon package (EncodeTOON, DecodeJSON)\n6. Write tests for create, list, show operations\n\n## Files to Create/Modify\n- cmd/bdt/create.go - Create command\n- cmd/bdt/list.go - List command \n- cmd/bdt/show.go - Show command\n- cmd/bdt/storage.go - File I/O helper\n\n## Success Criteria\n- bdt create \"Issue title\" creates and saves to issues.toon\n- bdt list displays all issues in human-readable format\n- bdt list --json shows JSON output\n- bdt show \u003cid\u003e displays single issue\n- Issues round-trip correctly: create → list → show\n- All tests passing with \u003e80% coverage","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T12:59:54.270296918-07:00","updated_at":"2025-12-19T13:09:00.196045685-07:00","closed_at":"2025-12-19T13:09:00.196045685-07:00"}
@@ -541,6 +554,7 @@
{"id":"bd-jv4w","title":"Phase 1.2: Separate bdt executable - Initial structure","description":"Create minimal bdt command structure completely separate from bd. Must not share code, config, or database.\n\n## Subtasks\n1. Create cmd/bdt/ directory with main.go\n2. Implement bdt version, help, and status commands\n3. Configure separate database location: $HOME/.bdt/ (not $HOME/.beads/)\n4. Create separate issues file: issues.toon (not issues.jsonl)\n5. Update build system:\n - Makefile: Add bdt target\n - .goreleaser.yml: Add bdt binary config\n\n## Files to Create\n- cmd/bdt/main.go - Entry point\n- cmd/bdt/version.go - Version handling\n- cmd/bdt/help.go - Help text (separate from bd)\n\n## Success Criteria\n- `make build` produces both `bd` and `bdt` executables\n- `bdt version` shows distinct version output from bd\n- `bdt --help` shows distinct help text\n- bdt uses $HOME/.bdt/ directory (verify with `bdt info`)\n- bd and bdt completely isolated (no shared imports beyond stdlib)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T11:48:34.866877282-07:00","updated_at":"2025-12-19T12:59:11.389296015-07:00","closed_at":"2025-12-19T12:59:11.389296015-07:00"}
{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"tombstone","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
{"id":"bd-jxp6","title":"Merge: jasper-1767142011373","description":"branch: polecat/jasper-1767142011373\ntarget: main\nsource_issue: jasper-1767142011373\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:57:20.349497-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T18:12:30.965618-08:00","closed_at":"2025-12-30T18:11:07.859316-08:00"}
{"id":"bd-jybi","title":"Migration: add gt:* labels to existing Gas Town beads","description":"One-time migration to add gt:* labels to existing Gas Town beads.\n\n## Work\n- Create migration command or script\n- Find all beads with type=agent, add label gt:agent\n- Find all beads with type=role, add label gt:role\n- Find all beads with type=rig, add label gt:rig\n- Find all beads with type=convoy, add label gt:convoy\n- Find all beads with type=slot, add label gt:slot\n\n## Notes\nThis runs in Gas Town, not in beads core. May be a gt command rather than bd command.","status":"open","priority":3,"issue_type":"task","created_at":"2026-01-06T20:40:54.0364-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T20:40:54.0364-08:00","dependencies":[{"issue_id":"bd-jybi","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.801895-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-jybi","depends_on_id":"bd-7xd7","type":"blocks","created_at":"2026-01-06T20:41:29.183759-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-k4ww","title":"Merge: pearl-mjtmd27a","description":"branch: polecat/pearl-mjtmd27a\ntarget: main\nsource_issue: pearl-mjtmd27a\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T22:16:38.232474-08:00","created_by":"beads/polecats/pearl","updated_at":"2026-01-01T10:43:18.623861-08:00","closed_at":"2026-01-01T10:43:18.623861-08:00","close_reason":"Stale MR - branch no longer exists on remote"}
{"id":"bd-kbfn","title":"Phase 2: Timer Gates (Witness integration)","description":"Implement timer gate evaluation in Witness patrol.\n\n## Behavior\n- Witness patrol includes `bd gate check --type=timer`\n- Gate metadata: timeout, created_at stored on gate issue\n- Expired gates escalate to Deacon/Overseer (not auto-close)\n\n## Implementation\n1. Add timer gate check to mol-witness-patrol.formula.toml\n2. `bd gate check --type=timer` evaluates: now \u003e created_at + timeout\n3. Expired gates: escalate via `gt escalate --type gate_timeout`\n4. Non-expired gates: skip (will check next patrol)\n\n## Acceptance Criteria\n- [ ] `bd gate check --type=timer` works\n- [ ] Witness patrol runs timer check each cycle\n- [ ] Expired gates trigger escalation\n- [ ] Gate timeout configurable per-gate","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecats/quartz","created_at":"2026-01-02T01:55:40.113565-08:00","created_by":"mayor","updated_at":"2026-01-02T12:48:35.498928-08:00","closed_at":"2026-01-02T12:48:35.498928-08:00","close_reason":"Implemented bd gate check --type=timer with escalation support","dependencies":[{"issue_id":"bd-kbfn","depends_on_id":"bd-mcva","type":"parent-child","created_at":"2026-01-02T01:55:53.92126-08:00","created_by":"mayor"}]}
{"id":"bd-kblo","title":"bd prime should mention when beads is redirected","description":"## Problem\n\nAgents running in a redirected clone don't know they're sharing beads with other clones. This can cause confusion when molecules or issues seem to 'appear' or 'disappear'.\n\n## Proposed Solution\n\nWhen `bd prime` runs and detects a redirect, include it in the output:\n\n```\nBeads: /Users/stevey/gt/beads/mayor/rig/.beads\n (redirected from crew/dave - you share issues with other clones)\n```\n\n## Why\n\nVisibility over magic. If agents can see the redirect, they can reason about it.\n\n## Related\n\n- bd where command (shows this on demand)\n- gt redirect following (ensures gt matches bd behavior)","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-27T21:15:55.026907-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T21:33:33.765635-08:00","closed_at":"2025-12-27T21:33:33.765635-08:00"}
@@ -608,11 +622,12 @@
{"id":"bd-m164","title":"Add 0.33.2 to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"0.33.2\",\n Date: \"2025-12-21\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.761218-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
{"id":"bd-m6r3","title":"Refactor: Extract shared getEpicChildren helper for swarm commands","description":"## Context\n`getSwarmStatus` and `analyzeEpicForSwarm` in cmd/bd/swarm.go have nearly identical code for:\n- Getting epic dependents via GetDependents\n- Filtering to parent-child relationships\n- Building childIDSet map\n- Building dependency maps\n\n## Implementation\n1. Extract `getEpicChildren(ctx, store, epicID)` that returns:\n - `[]*types.Issue` - child issues\n - `map[string]bool` - child ID set\n - `map[string][]string` - dependency map (within children)\n - `error`\n\n2. Refactor both `analyzeEpicForSwarm` and `getSwarmStatus` to use it\n\n3. Consider defining a named interface for the store methods:\n ```go\n type SwarmStore interface {\n GetIssue(context.Context, string) (*types.Issue, error)\n GetDependents(context.Context, string) ([]*types.Issue, error)\n GetDependencyRecords(context.Context, string) ([]*types.Dependency, error)\n }\n ```\n\n## Files\n- cmd/bd/swarm.go (lines 150-248, 616-682)\n\n## Acceptance\n- No duplicated code for fetching epic children\n- Both commands produce identical results as before","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T21:30:55.55377-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T21:43:50.759453-08:00","closed_at":"2025-12-28T21:43:50.759453-08:00"}
{"id":"bd-m7ib","title":"Add creator field to Issue struct","description":"Add Creator *EntityRef field to Issue. Tracks who created the issue. Optional, omitted if nil in JSONL. This enables CV chain tracking - every piece of work is attributed to its creator.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T17:53:31.599447-08:00","updated_at":"2025-12-22T20:03:24.264672-08:00","closed_at":"2025-12-22T20:03:24.264672-08:00","dependencies":[{"issue_id":"bd-m7ib","depends_on_id":"bd-7pwh","type":"parent-child","created_at":"2025-12-22T17:53:43.39957-08:00","created_by":"daemon"},{"issue_id":"bd-m7ib","depends_on_id":"bd-nmch","type":"blocks","created_at":"2025-12-22T17:53:47.826309-08:00","created_by":"daemon"}]}
{"id":"bd-m8ew","title":"Fix release molecule gate discovery and validation","description":"## Problem\n\nThe beads-release molecule has critical issues that cause it to report success when everything fails:\n\n### 1. Gate Discovery Mismatch (Critical)\n\nThe formula declares:\n```toml\n[steps.gate]\ntype = \"gh:run\"\nid = \"release.yml\" # workflow NAME\n```\n\nThis creates a gate with `AwaitID=\"release.yml\"`. But:\n- `bd gate discover` only finds gates where `AwaitID == \"\"` (empty)\n- `bd gate check` passes `release.yml` to `gh run view release.yml` which fails (expects numeric run ID)\n\n**Result**: Gate can never be automatically resolved. Agent either bypasses it manually or gets stuck.\n\n### 2. No Validation on Step Completion\n\nFormula steps are prose instructions. Nothing validates:\n- Commands actually ran successfully (exit codes)\n- Expected changes actually occurred\n- Verification assertions passed\n\nAgent can mark any step complete regardless of actual success.\n\n## Solution\n\n### Gate Fix Options\n- **Option A**: Store workflow name in separate field, discover populates await_id from matching run\n- **Option B**: Detect non-numeric await_id as workflow name hint, use it to filter gh run list\n\n### Validation Improvements\n- Steps with ```bash``` blocks should capture exit codes\n- Verification steps should have machine-checkable assertions\n- Consider script gates that run validation commands\n\n## Related\n- bd-mcva (Gate Evaluation epic) - infrastructure is done, usage pattern is broken\n- Continues design toward event-driven releases","status":"open","priority":0,"issue_type":"bug","created_at":"2026-01-06T20:07:09.055747-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T20:07:09.055747-08:00","labels":["design","release-workflow"]}
{"id":"bd-m8ew","title":"Fix release molecule gate discovery and validation","description":"## Problem\n\nThe beads-release molecule has critical issues that cause it to report success when everything fails:\n\n### 1. Gate Discovery Mismatch (Critical)\n\nThe formula declares:\n```toml\n[steps.gate]\ntype = \"gh:run\"\nid = \"release.yml\" # workflow NAME\n```\n\nThis creates a gate with `AwaitID=\"release.yml\"`. But:\n- `bd gate discover` only finds gates where `AwaitID == \"\"` (empty)\n- `bd gate check` passes `release.yml` to `gh run view release.yml` which fails (expects numeric run ID)\n\n**Result**: Gate can never be automatically resolved. Agent either bypasses it manually or gets stuck.\n\n### 2. No Validation on Step Completion\n\nFormula steps are prose instructions. Nothing validates:\n- Commands actually ran successfully (exit codes)\n- Expected changes actually occurred\n- Verification assertions passed\n\nAgent can mark any step complete regardless of actual success.\n\n## Solution\n\n### Gate Fix Options\n- **Option A**: Store workflow name in separate field, discover populates await_id from matching run\n- **Option B**: Detect non-numeric await_id as workflow name hint, use it to filter gh run list\n\n### Validation Improvements\n- Steps with ```bash``` blocks should capture exit codes\n- Verification steps should have machine-checkable assertions\n- Consider script gates that run validation commands\n\n## Related\n- bd-mcva (Gate Evaluation epic) - infrastructure is done, usage pattern is broken\n- Continues design toward event-driven releases","status":"closed","priority":0,"issue_type":"bug","created_at":"2026-01-06T20:07:09.055747-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T23:33:46.422048-08:00","closed_at":"2026-01-06T23:33:46.422048-08:00","close_reason":"Fixed gate discovery to handle workflow name hints in AwaitID. Gates with non-numeric AwaitID (e.g., 'release.yml') are now discovered and matched to runs by workflow name. Gate check also handles this gracefully. Created bd-u0fn for step validation improvements.","labels":["design","release-workflow"]}
{"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% → 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-23T22:42:11.921388-08:00","closed_at":"2025-12-23T22:42:11.921388-08:00"}
{"id":"bd-m964","title":"Consider FTS5 for text search at scale","description":"SearchIssues uses LIKE patterns for text search which can't use indexes.\n\n**Current query (queries.go:1475-1477):**\n```sql\n(title LIKE ? OR description LIKE ? OR id LIKE ?)\n```\n\n**Problem:** Full table scan on every text search. At 100K+ issues, this becomes slow.\n\n**SQLite FTS5 solution:**\n```sql\nCREATE VIRTUAL TABLE issues_fts USING fts5(\n id, title, description, design, notes,\n content='issues',\n content_rowid='rowid'\n);\n\n-- Triggers to keep FTS in sync\nCREATE TRIGGER issues_ai AFTER INSERT ON issues BEGIN\n INSERT INTO issues_fts(rowid, id, title, description, design, notes)\n VALUES (new.rowid, new.id, new.title, new.description, new.design, new.notes);\nEND;\n-- (similar for UPDATE, DELETE)\n```\n\n**Trade-offs:**\n- Database size increase (~30-50% for text content)\n- Additional write overhead (trigger execution)\n- Better search capabilities (ranking, phrase search)\n\n**Decision needed:** Is full-text search a priority feature? Current LIKE search may be acceptable for most use cases.\n\n**Benchmark first:** Measure SearchIssues at 100K scale before implementing.","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-22T22:58:56.466121-08:00","updated_at":"2026-01-02T00:17:14.332908-08:00","dependencies":[{"issue_id":"bd-m964","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:56.466764-08:00","created_by":"daemon"}]}
{"id":"bd-mcva","title":"Gate Evaluation: Phases 2-4 (Timer, GitHub, Cross-Rig)","description":"Complete gate evaluation implementation started in bd-7zka.2 (Phase 1: Human Gates).\n\n## Background\nPhase 1 implemented gate issues as beads that block dependent steps. Phases 2-4 add automatic gate resolution.\n\n## Gate Types and Watchers\n\n| Gate Type | Watcher | Trigger |\n|-----------|---------|---------|\n| timer | Witness | Patrol cycle |\n| gh:run | Refinery | Patrol poll |\n| gh:pr | Refinery | Patrol poll |\n| bead (cross-rig) | Existing dep resolution | Sync |\n\n## Commands\n```bash\nbd gate list # Show open gates\nbd gate check # Evaluate all gates\nbd gate check --type=timer # Check only timer gates\nbd gate check --type=gh # Check only GitHub gates\nbd gate resolve \u003cid\u003e [--reason] # Force-close a gate\n```\n\n## Related\n- bd-7zka.2: Phase 1 implementation (closed)\n- gt-dh65: Deacon patrol gate checking integration","status":"closed","priority":2,"issue_type":"epic","created_at":"2026-01-02T01:55:17.373041-08:00","created_by":"mayor","updated_at":"2026-01-02T17:04:10.4889-08:00","closed_at":"2026-01-02T17:04:10.4889-08:00","close_reason":"All phases complete: Timer gates (bd-kbfn), GitHub gates (bd-oos3), Cross-rig bead gates (bd-w3rh). bd gate check command fully implemented."}
{"id":"bd-mczr","title":"bd init inherits from parent hub instead of starting empty (GH#896)","description":"When running bd init in a subdirectory of a hub, the new database gets populated with parent hub's issues and repo UUID, causing DATABASE MISMATCH errors. Root cause: FindBeadsDir() walks up to parent directories and finds parent hub's .beads. Need to ensure bd init only looks at LOCAL git repo's history, not parent hub.","status":"closed","priority":1,"issue_type":"bug","created_at":"2026-01-04T15:22:44.025097-08:00","created_by":"beads/crew/grip","updated_at":"2026-01-04T15:43:38.801825-08:00","closed_at":"2026-01-04T15:43:38.801825-08:00","close_reason":"Fixed in 243263dd - added guard to reject beadsDir outside gitRoot"}
{"id":"bd-mgt2","title":"Update UI styles for removed types","description":"Update or remove type-specific styling for agent/role/rig types.\n\n## Work\n- Remove ColorTypeAgent, ColorTypeRole, ColorTypeRig constants\n- Remove TypeAgentStyle, TypeRoleStyle, TypeRigStyle\n- Update RenderIssueType() switch to remove these cases\n- Consider: add label-based styling for gt:* labels\n\n## Files\n- internal/ui/styles.go","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-06T20:40:47.950601-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T22:11:58.42622-08:00","closed_at":"2026-01-06T22:11:58.42622-08:00","close_reason":"Removed Gas Town type colors and styles from UI","dependencies":[{"issue_id":"bd-mgt2","depends_on_id":"bd-i54l","type":"parent-child","created_at":"2026-01-06T20:41:11.677237-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-mh4w","title":"Rename 'bond' to 'spawn' for instantiation","description":"Rename the bd mol bond command to bd mol spawn for instantiating protos.\n \n- Rename molBondCmd to molSpawnCmd\n- Update command Use/Short/Long descriptions \n- Keep 'bond' available for the new bonding feature\n- Update all documentation references\n- Add 'protomolecule' as easter egg alias for 'proto'","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T00:58:44.529026-08:00","updated_at":"2025-12-21T01:19:42.942819-08:00","closed_at":"2025-12-21T01:19:42.942819-08:00","dependencies":[{"issue_id":"bd-mh4w","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.167902-08:00","created_by":"daemon"}]}
{"id":"bd-mhhb","title":"Read operations should not modify database file","description":"Read-only operations (bd list, bd ready, bd show) modify the database file. Every open sets WAL pragma, runs schema/migrations, and checkpoints on close. Need sqlite.NewReadOnly() that opens with mode=ro, skips WAL/schema/migrations, and skips checkpoint. See GH#804.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-30T16:27:13.416643-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-30T16:46:49.921614-08:00","closed_at":"2025-12-30T16:46:49.921614-08:00","close_reason":"Implemented read-only mode for SQLite. Read commands now use NewReadOnly() which opens with mode=ro, skips WAL pragma/schema/migrations, and skips checkpoint on close."}
{"id":"bd-mol-02i","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go.\n\nThis powers `bd info --whats-new` for agents.\n\n```go\n\"0.44.0\": {\n \"summary\": \"Brief description\",\n \"changes\": []string{\n \"Key change 1\",\n \"Key change 2\",\n },\n},\n```\n\nFocus on workflow-impacting changes agents need to know.\n","status":"tombstone","priority":2,"issue_type":"task","created_at":"2026-01-04T23:05:15.391697-08:00","updated_at":"2026-01-04T23:49:29.777567-08:00","close_reason":"Added versionChanges for 0.43.0 and 0.44.0","dependencies":[{"issue_id":"bd-mol-02i","depends_on_id":"bd-mol-wba","type":"parent-child","created_at":"2026-01-04T23:05:15.397246-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-mol-02i","depends_on_id":"bd-mol-bgp","type":"blocks","created_at":"2026-01-04T23:05:15.40805-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2026-01-04T23:49:29.777567-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
@@ -854,6 +869,7 @@
{"id":"bd-rinx","title":"Witness should auto-nuke idle polecats, not escalate","description":"When witness detects an idle polecat with no work, it escalates to Mayor asking what to do.\n\nExpected: Witness should nuke idle polecats automatically if:\n1. No work hooked\n2. No uncommitted/unpushed changes (cleanup_status=clean)\n3. Idle for \u003ethreshold (e.g., 5 minutes)\n\nOnly escalate if polecat has unsaved work that needs recovery.\n\nCurrent behavior creates unnecessary mail noise for the Mayor.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-30T21:21:57.918823-08:00","created_by":"mayor","updated_at":"2025-12-31T00:21:22.701781-08:00","closed_at":"2025-12-31T00:21:22.701781-08:00","close_reason":"Added Step 3a to witness patrol formula for auto-nuke of idle polecats with clean git state"}
{"id":"bd-rl5t","title":"Integration test: agent waits for CI via gate","description":"End-to-end test of the gate workflow.\n\n## Test Scenario\n1. Agent creates gate: bd gate create --await gh:run:123 --timeout 5m --notify beads/dave\n2. Agent writes handoff and exits\n3. Deacon patrol checks gate condition\n4. (Mock) GitHub run completes\n5. Deacon notifies waiter and closes gate\n6. New agent session reads mail and resumes\n\n## Test Requirements\n- Mock GitHub API responses\n- Test timeout path\n- Test multiple waiters\n- Verify mail notifications sent","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:41.725752-08:00","updated_at":"2025-12-23T12:24:08.346347-08:00","closed_at":"2025-12-23T12:24:08.346347-08:00","dependencies":[{"issue_id":"bd-rl5t","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:53.157037-08:00","created_by":"daemon"},{"issue_id":"bd-rl5t","depends_on_id":"bd-2l03","type":"blocks","created_at":"2025-12-23T11:44:56.674866-08:00","created_by":"daemon"},{"issue_id":"bd-rl5t","depends_on_id":"bd-ykqu","type":"blocks","created_at":"2025-12-23T11:44:56.753264-08:00","created_by":"daemon"}]}
{"id":"bd-rm8m","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-30T19:23:45.503188-08:00","created_by":"deacon","updated_at":"2025-12-30T19:23:45.503188-08:00"}
{"id":"bd-rnle","title":"Session ended: gt-beads-crew-emma","status":"closed","priority":2,"issue_type":"event","created_at":"2026-01-07T00:17:08.220689-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-07T00:17:08.258596-08:00","closed_at":"2026-01-07T00:17:08.258596-08:00","close_reason":"auto-closed session event"}
{"id":"bd-rnnr","title":"BondRef data model for compound lineage","description":"Add data model support for tracking compound molecule lineage.\n\nNEW FIELDS on Issue:\n bonded_from: []BondRef // For compounds: constituent protos\n\nNEW TYPE:\n type BondRef struct {\n ProtoID string // Source proto ID\n BondType string // sequential, parallel, conditional\n BondPoint string // Attachment site (issue ID or empty for root)\n }\n\nJSONL SERIALIZATION:\n {\n \"id\": \"proto-feature-tested\",\n \"title\": \"Feature with tests\",\n \"bonded_from\": [\n {\"proto_id\": \"proto-feature\", \"bond_type\": \"root\"},\n {\"proto_id\": \"proto-testing\", \"bond_type\": \"sequential\"}\n ],\n ...\n }\n\nQUERIES:\n- GetCompoundConstituents(id) → []BondRef\n- IsCompound(id) → bool\n- GetCompoundsUsing(protoID) → []Issue // Reverse lookup","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T00:59:38.582509-08:00","updated_at":"2025-12-21T01:19:43.922416-08:00","closed_at":"2025-12-21T01:19:43.922416-08:00","dependencies":[{"issue_id":"bd-rnnr","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.234246-08:00","created_by":"daemon"}]}
{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-rrjo","title":"Swarm: Test coordinator display","description":"Swarm molecule orchestrating epic bd-2rkr.\n\nEpic: bd-2rkr\nCoordinator: ","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-28T22:00:50.527754-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-29T13:40:29.71176-08:00","closed_at":"2025-12-29T13:40:29.71176-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates","dependencies":[{"issue_id":"bd-rrjo","depends_on_id":"bd-2rkr","type":"relates-to","created_at":"2025-12-28T22:00:50.528518-08:00","created_by":"beads/crew/dave"}]}
@@ -908,6 +924,7 @@
{"id":"bd-tvus","title":"bd import reports success but writes nothing to empty database","description":"## Problem\n\nIn a fresh crew clone with no database, `bd import` and `bd sync --import-only` report:\n```\nImport complete: 0 created, 0 updated, 416 unchanged, 203 skipped\n```\n\nBut the database remains empty:\n```\nsqlite3 .beads/beads.db 'SELECT COUNT(*) FROM issues'\n0\n```\n\n## Reproduction Steps\n\n1. Fresh clone (crew/dave) with .beads/issues.jsonl containing 619 issues\n2. `bd init --skip-hooks` creates empty database\n3. `bd import -i .beads/issues.jsonl` reports 416 unchanged\n4. Database still has 0 issues\n\n## Expected\n\nImport should create 416 issues in the database.\n\n## Root Cause Hypothesis\n\nThe 'unchanged' count suggests it's comparing against something (maybe in-memory state?) rather than the actual database. The daemon running from a different clone (mayor/rig) may be confusing the import logic.\n\n## Context\n\nDiscovered during v0.39.0 release. Worked around by doing the release manually instead of using the beads-release molecule.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-27T19:56:15.42338-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T20:56:24.023684-08:00","closed_at":"2025-12-27T20:56:24.023684-08:00"}
{"id":"bd-twbi","title":"Relocate quickstart to bd help quickstart or docs","description":"## Task\nMove `bd quickstart` → `bd help quickstart` or convert to documentation.\n\n## Options\n\n### Option A: Move to bd help quickstart\n- Create a custom help topic\n- Cobra supports additional help topics\n\n### Option B: Convert to docs only\n- Keep content in docs/QUICKSTART.md\n- Remove the command entirely\n- Update references to point to docs\n\n## Recommendation\nOption B - quickstart is essentially documentation, not a functional command.\nThe command just prints formatted text that could live in docs.\n\n## Implementation (Option B)\n1. Ensure docs/QUICKSTART.md has equivalent content\n2. Add hidden alias that prints \"See docs/QUICKSTART.md or bd help\"\n3. Update all references:\n - README.md\n - docs/INSTALLING.md\n - docs/EXTENDING.md\n - npm-package/INTEGRATION_GUIDE.md\n - .beads/README.md\n\n## Files to modify\n- cmd/bd/quickstart.go (hide or remove)\n- Multiple docs (update references)\n","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-27T15:11:10.238898-08:00","created_by":"mayor","updated_at":"2025-12-27T16:09:23.140978-08:00","closed_at":"2025-12-27T16:09:23.140978-08:00"}
{"id":"bd-txds","title":"Merge: obsidian-1767142004753","description":"branch: polecat/obsidian-1767142004753\ntarget: main\nsource_issue: obsidian-1767142004753\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:57:13.543979-08:00","created_by":"beads/polecats/obsidian","updated_at":"2025-12-30T18:12:30.976992-08:00","closed_at":"2025-12-30T18:11:07.875365-08:00"}
{"id":"bd-u0fn","title":"Add validation for formula step completion","description":"Formula steps are prose instructions with no automatic validation. Consider:\n- Steps with ```bash``` blocks should capture exit codes\n- Verification steps should have machine-checkable assertions\n- Consider script gates that run validation commands\n\nRelated to bd-m8ew (gate discovery fix).","status":"open","priority":3,"issue_type":"feature","created_at":"2026-01-06T23:33:34.325057-08:00","created_by":"beads/crew/dave","updated_at":"2026-01-06T23:33:34.325057-08:00","dependencies":[{"issue_id":"bd-u0fn","depends_on_id":"bd-m8ew","type":"related","created_at":"2026-01-06T23:33:40.041371-08:00","created_by":"beads/crew/dave"}]}
{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T23:17:26.994875-08:00","closed_at":"2025-12-20T23:17:26.994875-08:00"}
{"id":"bd-u2sc","title":"GH#692: Code quality and refactoring improvements","description":"Epic for implementing refactoring suggestions from GitHub issue #692 (rsnodgrass). These are code quality improvements that don't change functionality but improve maintainability, type safety, and performance.\n\nOriginal issue: https://github.com/steveyegge/beads/issues/692\n\nHigh priority items:\n1. Replace map[string]interface{} with typed structs for JSON output\n2. Adopt slices.SortFunc instead of sort.Slice (Go 1.21+)\n3. Split large files (sync.go, init.go, show.go)\n4. Introduce slog for structured logging in daemon\n\nLower priority:\n5. Further CLI helper extraction\n6. Preallocate slices in hot paths\n7. Polish items (error wrapping, table-driven parsing)","status":"closed","priority":3,"issue_type":"epic","created_at":"2025-12-22T14:26:31.630004-08:00","updated_at":"2025-12-23T22:07:32.477628-08:00","closed_at":"2025-12-23T22:07:32.477628-08:00"}
@@ -932,6 +949,7 @@
{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"}
{"id":"bd-uwkp","title":"Phase 2.4: Git merge driver optimization for TOON format","description":"Optimize git 3-way merge for TOON line-oriented format.\n\n## Overview\nTOON is line-oriented (unlike binary formats), enabling smarter git merge strategies. Implement custom merge driver to handle TOON-specific merge patterns.\n\n## Required Work\n\n### 2.4.1 TOON Merge Driver\n- [ ] Create .git/info/attributes entry for *.toon files\n- [ ] Implement custom merge driver script/command\n- [ ] Handle tabular format row merges (line-based 3-way)\n- [ ] Handle YAML-style format merges\n- [ ] Conflict markers for unsolvable conflicts\n\n### 2.4.2 Merge Patterns\n- [ ] Row addition: both branches add different rows → union\n- [ ] Row deletion: one branch deletes, other modifies → conflict (manual review)\n- [ ] Row modification: concurrent field changes → intelligent merge or conflict\n- [ ] Field ordering changes: ignore (TOON format resilient to order)\n\n### 2.4.3 Testing \u0026 Documentation\n- [ ] Unit tests for merge scenarios (3-way merge logic)\n- [ ] Integration tests with actual git merges\n- [ ] Conflict scenario testing\n- [ ] Documentation of merge strategy\n\n## Success Criteria\n- Git merge handles TOON conflicts intelligently\n- Fewer manual merge conflicts than JSONL\n- Round-trip preserved through merges\n- All 70+ tests still passing\n- Git history stays clean (minimal conflict markers)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:43:14.339238776-07:00","updated_at":"2025-12-21T14:42:26.434306-08:00","closed_at":"2025-12-21T14:42:26.434306-08:00","dependencies":[{"issue_id":"bd-uwkp","depends_on_id":"bd-iic1","type":"discovered-from","created_at":"2025-12-19T14:43:14.34427988-07:00","created_by":"daemon"}]}
{"id":"bd-uxlb","title":"Add bd agent state command for ZFC-compliant state reporting","description":"Add command for agents to write their own state to agent beads.\n\n```bash\nbd agent state \u003cagent-id\u003e \u003cstate\u003e\n# Example: bd agent state gt-mayor running\n# States: idle | running | stuck | stopped | dead\n```\n\nImplementation:\n1. Lookup agent bead by ID (type=agent)\n2. Update agent_state field in description\n3. Update last_activity timestamp\n4. Trigger bd sync if configured\n\nAlso add:\n- bd agent heartbeat \u003cagent-id\u003e - just updates last_activity\n- bd agent show \u003cagent-id\u003e - show agent bead details\n\nThis is the ZFC-compliant way for agents to self-report state.\n\nCross-ref: gt-p2vyo in gastown","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T01:49:46.325964-08:00","created_by":"mayor","updated_at":"2025-12-28T01:57:05.839623-08:00","closed_at":"2025-12-28T01:57:05.839623-08:00"}
{"id":"bd-uyf3","title":"Session ended: gt-beads-crew-emma","status":"closed","priority":2,"issue_type":"event","created_at":"2026-01-06T23:52:08.520371-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-06T23:52:08.556361-08:00","closed_at":"2026-01-06T23:52:08.556361-08:00","close_reason":"auto-closed session event"}
{"id":"bd-uz8r","title":"Phase 2.3: TOON deletion tracking","description":"Implement deletion tracking in TOON format.\n\n## Overview\nPhase 2.2 switched storage to TOON format. Phase 2.3 adds deletion tracking in TOON format for propagating deletions across clones.\n\n## Required Work\n\n### 2.3.1 Deletion Tracking (TOON Format)\n- [ ] Implement deletions.toon file (tracking deleted issue records)\n- [ ] Add DeleteTracker struct to record deleted issue IDs and metadata\n- [ ] Update bdt delete command to record in deletions.toon\n- [ ] Design deletion record format (ID, timestamp, reason, hash)\n- [ ] Implement auto-prune of old deletion records (configurable TTL)\n\n### 2.3.2 Sync Propagation\n- [ ] Load deletions.toon during import\n- [ ] Remove deleted issues from local database when imported from remote\n- [ ] Handle edge cases (delete same issue in multiple clones)\n- [ ] Deletion ordering and conflict resolution\n\n### 2.3.3 Testing\n- [ ] Unit tests for deletion tracking\n- [ ] Integration tests for deletion propagation\n- [ ] Multi-clone deletion scenarios\n- [ ] TTL expiration tests\n\n## Success Criteria\n- deletions.toon stores deletion records in TOON format\n- Deletions propagate across clones via git sync\n- Old records auto-prune after TTL\n- All 70+ tests still passing\n- bdt delete command works seamlessly","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:37:23.722066816-07:00","updated_at":"2025-12-21T14:42:27.491932-08:00","closed_at":"2025-12-21T14:42:27.491932-08:00","dependencies":[{"issue_id":"bd-uz8r","depends_on_id":"bd-iic1","type":"discovered-from","created_at":"2025-12-19T14:37:23.726825771-07:00","created_by":"daemon"}]}
{"id":"bd-v2mr","title":"Add RequiredSections() method to IssueType","description":"Add method to internal/types that returns recommended sections per issue type (bug, task, feature, epic). This is the foundation for validation.","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-01T11:19:06.129337-08:00","created_by":"beads/crew/grip","updated_at":"2026-01-01T11:28:00.829607-08:00","closed_at":"2026-01-01T11:28:00.829607-08:00","close_reason":"Implemented RequiredSections() method on IssueType with tests","dependencies":[{"issue_id":"bd-v2mr","depends_on_id":"bd-ou35","type":"parent-child","created_at":"2026-01-01T11:19:22.697598-08:00","created_by":"beads/crew/grip"}]}
{"id":"bd-v43g","title":"bd move: Cross-rig bead relocation","description":"## Problem\n\nBeads sometimes get filed in the wrong rig (e.g., hq-* instead of gt-* or bd-*). There's no way to move them without manual recreation.\n\n## Current Misfiled Examples\n\n| ID | Title | Should Be |\n|----|-------|-----------|\n| hq-c21fj | bd init --from-jsonl | bd-* |\n| hq-q3tki | gt convoy list --tree | gt-* |\n| hq-1h2to | Stranded convoy detection | gt-* |\n| hq-2wy2i | Circuit breaker for stuck agents | gt-* |\n| hq-zs2t8 | Handoff mail bug | gt-* |\n| hq-ufiy | Formula semantics | gt-* |\n\n## Proposed Solution\n\nAdd `bd move \u003cid\u003e --to \u003cprefix|rig\u003e` command:\n\n```bash\nbd move hq-c21fj --to bd- # Move to beads rig\nbd move hq-q3tki --to gt- # Move to gastown rig\nbd move hq-1h2to --to gastown # Rig name also works\n```\n\n## Implementation\n\n1. Resolve target rig from prefix or name via routes.jsonl\n2. Generate new ID with target prefix\n3. Create bead in target rig's .beads/\n4. Tombstone original with redirect note: \"Moved to \u003cnew-id\u003e\"\n5. Update dependencies:\n - Rewrite deps pointing TO moved bead\n - Rewrite deps pointing FROM moved bead\n6. Print mapping: hq-c21fj -\u003e bd-xxxxx\n\n## Edge Cases\n\n- **Cross-repo moves**: May need bd sync on both sides\n- **Blocked-by chains**: All references need remapping\n- **Assignees**: Preserve or clear? (probably preserve)\n- **Ephemeral beads**: Block move? (ephemeral shouldn't be relocated)\n\n## Alternative: bd clone\n\nCould also support `bd clone \u003cid\u003e --to \u003cprefix\u003e` for copying without tombstoning, useful for templates.","status":"closed","priority":2,"issue_type":"feature","created_at":"2026-01-02T01:15:54.43056-08:00","created_by":"gastown/crew/joe","updated_at":"2026-01-02T01:37:42.736136-08:00","closed_at":"2026-01-02T01:37:42.736136-08:00","close_reason":"Implemented by Dave, used to relocate 6 misfiled beads"}
@@ -978,6 +996,7 @@
{"id":"bd-wisp-bkf","title":"Restart daemons","description":"Restart bd daemons to pick up new version.\n\n```bash\nbd daemons killall\n```\n\nDaemons will auto-restart with new version on next bd command.\n\nVerify:\n```bash\nbd daemons list\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:07:32.259461-08:00","updated_at":"2026-01-06T20:18:20.108169-08:00","closed_at":"2026-01-06T20:18:20.108169-08:00","close_reason":"Release v0.45.0 complete","dependencies":[{"issue_id":"bd-wisp-bkf","depends_on_id":"bd-wisp-lo8","type":"parent-child","created_at":"2026-01-06T20:07:32.270963-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-wisp-bkf","depends_on_id":"bd-wisp-fm4","type":"blocks","created_at":"2026-01-06T20:07:32.290802-08:00","created_by":"beads/crew/dave"}],"ephemeral":true}
{"id":"bd-wisp-bye","title":"Run bump-version.sh","description":"Update all component versions atomically.\n\n```bash\n./scripts/bump-version.sh 0.45.0\n```\n\nThis updates:\n- cmd/bd/version.go\n- .claude-plugin/*.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- npm-package/package.json\n- Hook templates\n- README.md\n- CHANGELOG.md (adds date)\n","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:07:32.257161-08:00","updated_at":"2026-01-06T20:11:24.896526-08:00","closed_at":"2026-01-06T20:11:24.896526-08:00","close_reason":"Version bumped and verified: 0.45.0","dependencies":[{"issue_id":"bd-wisp-bye","depends_on_id":"bd-wisp-lo8","type":"parent-child","created_at":"2026-01-06T20:07:32.263681-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-wisp-bye","depends_on_id":"bd-wisp-9kb","type":"blocks","created_at":"2026-01-06T20:07:32.275432-08:00","created_by":"beads/crew/dave"}],"ephemeral":true}
{"id":"bd-wisp-cf3","title":"Create release tag","description":"Create annotated git tag.\n\n```bash\ngit tag -a v0.45.0 -m \"Release v0.45.0\"\n```\n\nVerify: `git tag -l | tail -5`\n","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:07:32.257743-08:00","updated_at":"2026-01-06T20:12:04.079541-08:00","closed_at":"2026-01-06T20:12:04.079541-08:00","close_reason":"Tag v0.45.0 created","dependencies":[{"issue_id":"bd-wisp-cf3","depends_on_id":"bd-wisp-lo8","type":"parent-child","created_at":"2026-01-06T20:07:32.26534-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-wisp-cf3","depends_on_id":"bd-wisp-9ka","type":"blocks","created_at":"2026-01-06T20:07:32.278265-08:00","created_by":"beads/crew/dave"}],"ephemeral":true}
{"id":"bd-wisp-dj0","title":"beads-release","description":"Beads release workflow v2 - gate-aware async release.\n\nThis formula orchestrates a complete release cycle with async gates:\n\nPhase 1 (Polecat Work):\n 1. Preflight checks (clean git, up to date)\n 2. Documentation updates (CHANGELOG, info.go)\n 3. Version bump (all components)\n 4. Git operations (commit, tag, push)\n\nGate (Async Wait):\n 5. await-ci: Gate on GitHub Actions release.yml completion\n\nPhase 2 (Parallel Verification):\n 6. Verify GitHub release, npm package, PyPI package (concurrent)\n\nPhase 3 (Installation):\n 7. Local installation update\n 8. Daemon restart\n\n## Usage\n\n```bash\nbd mol wisp create beads-release --var version=0.44.0\n```\n\nOr assign to a polecat:\n```bash\ngt sling beads/polecats/p1 --formula beads-release --var version=0.44.0\n```\n\nThe polecat will complete Phase 1, then signal phase-complete. The gate blocks\nuntil release.yml finishes. A new polecat (or the same one) resumes for Phases 2-3.\n","status":"closed","priority":2,"issue_type":"epic","created_at":"2026-01-07T00:02:11.335159-08:00","updated_at":"2026-01-07T00:11:26.667806-08:00","closed_at":"2026-01-07T00:11:26.667806-08:00","close_reason":"Release v0.46.0 published: GitHub, npm, PyPI all verified","ephemeral":true}
{"id":"bd-wisp-eh4","title":"Verify npm package","description":"Confirm npm package published.\n\n```bash\nnpm show @beads/bd version\n```\n\nShould show 0.45.0.\n\nAlso check: https://www.npmjs.com/package/@beads/bd\n\nNote: npm registry may have a small propagation delay (1-2 min).\n","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:07:32.258891-08:00","updated_at":"2026-01-06T20:17:52.238932-08:00","closed_at":"2026-01-06T20:17:52.238932-08:00","close_reason":"All release artifacts verified: GitHub (9 assets), npm 0.45.0, PyPI 0.45.0","dependencies":[{"issue_id":"bd-wisp-eh4","depends_on_id":"bd-wisp-lo8","type":"parent-child","created_at":"2026-01-06T20:07:32.269222-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-wisp-eh4","depends_on_id":"bd-wisp-u9o","type":"blocks","created_at":"2026-01-06T20:07:32.283957-08:00","created_by":"beads/crew/dave"}],"ephemeral":true}
{"id":"bd-wisp-fm4","title":"Update local installation","description":"Update local bd to the new version.\n\nOption 1 - Homebrew:\n```bash\nbrew upgrade bd\n```\n\nOption 2 - Install script:\n```bash\ncurl -fsSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash\n```\n\nVerify:\n```bash\nbd --version\n```\n\nShould show 0.45.0.\n","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:07:32.259261-08:00","updated_at":"2026-01-06T20:18:20.106709-08:00","closed_at":"2026-01-06T20:18:20.106709-08:00","close_reason":"Release v0.45.0 complete","dependencies":[{"issue_id":"bd-wisp-fm4","depends_on_id":"bd-wisp-lo8","type":"parent-child","created_at":"2026-01-06T20:07:32.270383-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-wisp-fm4","depends_on_id":"bd-wisp-gnr","type":"blocks","created_at":"2026-01-06T20:07:32.286541-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-wisp-fm4","depends_on_id":"bd-wisp-eh4","type":"blocks","created_at":"2026-01-06T20:07:32.287962-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-wisp-fm4","depends_on_id":"bd-wisp-04d","type":"blocks","created_at":"2026-01-06T20:07:32.289399-08:00","created_by":"beads/crew/dave"}],"ephemeral":true}
{"id":"bd-wisp-gnr","title":"Verify GitHub release","description":"Check the GitHub releases page.\n\nhttps://github.com/steveyegge/beads/releases/tag/v0.45.0\n\nVerify:\n- Release created\n- Binaries attached (linux, darwin, windows)\n- Checksums present\n\n```bash\ngh release view v0.45.0 --json assets --jq '.assets[].name'\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-06T20:07:32.258704-08:00","updated_at":"2026-01-06T20:17:52.237306-08:00","closed_at":"2026-01-06T20:17:52.237306-08:00","close_reason":"All release artifacts verified: GitHub (9 assets), npm 0.45.0, PyPI 0.45.0","dependencies":[{"issue_id":"bd-wisp-gnr","depends_on_id":"bd-wisp-lo8","type":"parent-child","created_at":"2026-01-06T20:07:32.268607-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-wisp-gnr","depends_on_id":"bd-wisp-u9o","type":"blocks","created_at":"2026-01-06T20:07:32.282733-08:00","created_by":"beads/crew/dave"}],"ephemeral":true}
@@ -1040,6 +1059,7 @@
{"id":"bd-z830","title":"Test child task","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T23:26:58.246573-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-27T23:27:40.451603-08:00","closed_at":"2025-12-27T23:27:40.451603-08:00","dependencies":[{"issue_id":"bd-z830","depends_on_id":"bd-fbl9","type":"parent-child","created_at":"2025-12-27T23:27:02.984294-08:00","created_by":"daemon"}]}
{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- ✅ CloseIssue now updates both close_reason and closed_at\n- ✅ ReOpenIssue clears both close_reason and closed_at\n- ✅ Comprehensive tests added for both storage and CLI layers\n- ✅ Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\n✅ Tests cover both storage layer and CLI JSON output\n✅ Handles reopen case (clearing close_reason)\n✅ Good comments explaining dual-storage design\n✅ No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-29T13:40:29.724656-08:00","closed_at":"2025-12-29T13:40:29.724656-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates"}
{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
{"id":"bd-z8xz","title":"beads-release formula: add gate discover step and fix local-install","description":"The beads-release formula has several issues discovered during the v0.46.0 release:\n\n## Problem 1: Missing gate discover step\n\nThe formula creates a gate with `id = 'release.yml'` (workflow name hint), but there's no step to run `bd gate discover` after pushing the tag.\n\nCurrent flow:\n1. push-tag (triggers CI)\n2. await-ci (gate with await_id='release.yml')\n\nThe gate check fails with 404 because 'release.yml' isn't a run ID.\n\n**Fix:** Add explicit discover step, or rely on bd-fbkd (auto-discover in gate check).\n\n## Problem 2: local-install step missing dev path\n\nThe formula's local-install step says:\n- Option 1: brew upgrade bd\n- Option 2: curl ... | bash\n\nNeither is appropriate for a developer releasing from source. Missing:\n```bash\n# Option 3 - Build from source (dev):\ngo build -o bd ./cmd/bd\ncp bd ~/.local/bin/bd\n[[ $(uname) == 'Darwin' ]] \u0026\u0026 codesign --force --sign - ~/.local/bin/bd\n```\n\nThe macOS codesigning is critical - without it, the binary gets SIGKILL'd.\n\n## Problem 3: Formula calls bump-version.sh\n\nThe formula's run-bump-script step delegates to bump-version.sh. This means:\n- Two implementations of release logic (formula + script)\n- Script has codesigning; formula documentation doesn't mention it\n- Hybrid approach is confusing\n\n**Recommendation:** Either make bump-version.sh the authority (formula is just wrapper), or migrate script logic into formula steps with explicit commands.","status":"open","priority":1,"issue_type":"bug","created_at":"2026-01-07T00:20:38.312564-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-07T00:20:38.312564-08:00","dependencies":[{"issue_id":"bd-z8xz","depends_on_id":"bd-fbkd","type":"related","created_at":"2026-01-07T00:20:49.331713-08:00","created_by":"beads/crew/emma"}]}
{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-21T11:30:01.484978-08:00","closed_at":"2025-12-21T11:30:01.484978-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]}
{"id":"bd-zf5w","title":"bd mail uses git user.name for sender instead of BEADS_AGENT_NAME","description":"When sending mail via `bd mail send`, the sender field in the stored issue uses git config user.name instead of the BEADS_AGENT_NAME environment variable.\n\nReproduction:\n1. Set BEADS_AGENT_NAME=gastown-alpha\n2. Run: bd mail send mayor/ -s 'Test' -m 'Body'\n3. Check the issue.jsonl: sender is 'Steve Yegge' (git user.name) not 'gastown-alpha'\n\nExpected: The sender field should use BEADS_AGENT_NAME when set.\n\nThis breaks the mail system for multi-agent workflows where agents need to identify themselves by their role (polecat, refinery, etc.) rather than the human user's git identity.\n\nRelated: gt mail routing integration with Gas Town","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-20T21:46:33.646746-08:00","updated_at":"2025-12-20T21:59:25.771325-08:00","closed_at":"2025-12-20T21:59:25.771325-08:00"}
{"id":"bd-zgb9","title":"gt polecat done should auto-stop running session","description":"Currently 'gt polecat done' fails if session is running, requiring a separate 'gt session stop' first. This is unnecessary friction - done should just stop the session automatically since that's always what you want.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T04:11:23.899653-08:00","updated_at":"2025-12-23T04:12:13.029479-08:00","closed_at":"2025-12-23T04:12:13.029479-08:00"}