Adds #nosec G204 annotations to exec.Command calls that use
hardcoded paths. Fixes pre-existing lint failure exposed by PR #832.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
* test(daemon): Prove autoPull reads sync.branch from SQLite
- Verify daemon reads sync.branch from SQLite config source
- Show config.yaml sync-branch is ignored (YAML-only key)
- Add skipped tracer bullet test for issue #831
Coverage: daemon autoPull config resolution
* fix(daemon): Use syncbranch.IsConfigured() for autoPull
Problem:
- Daemon's periodic sync never activated when sync-branch configured in config.yaml
- autoPull check only read sync.branch from SQLite, missing YAML-only configuration
Solution:
- Replace SQLite-only check with syncbranch.IsConfigured()
- Update test to validate correct detection of YAML-configured sync branch
Impact:
- Periodic sync now activates correctly when sync-branch is configured in config.yaml
- Fixes daemon hanging issue for users with YAML-only configuration
When .beads/redirect exists, bd sync was using GetRepoRoot(cwd) to find
the git worktree location. This failed because the worktree should be
in the same repo as the beads directory, not the current working directory.
Fix: Use getRepoRootFromPath(beadsDir) to derive the repo root from
the actual beads location after following the redirect.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds closed_by_session tracking for entity CV building per Gas Town
decision 009-session-events-architecture.md.
Changes:
- Add ClosedBySession field to Issue struct
- Add closed_by_session column to issues table (migration 034)
- Add --session flag to bd close command
- Support CLAUDE_SESSION_ID env var as fallback
- Add --session flag to bd update for status=closed
- Display closed_by_session in bd show output
- Update Storage interface to include session parameter in CloseIssue
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
For molecules with >100 steps, shows summary instead of full step list:
- Counts children first using efficient GetMoleculeProgress query
- Shows progress summary with pointer to bd mol progress
- Add --limit flag to cap output (e.g., --limit 50)
- Add --range flag for specific ranges (e.g., --range 1-50)
Also closes epic bd-5nu1 (mega-molecule progress support).
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Replace findInProgressMolecules (which loads full subgraphs) with
findInProgressMoleculeIDs (which only returns IDs). This ensures
auto-discovery is efficient for mega-molecules.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Root cause: When a bd daemon crashes, its daemon.lock file remains with
the old PID. If that PID gets reused by an unrelated process, the code
would wait 5 seconds for a socket that will never appear.
Fix: Use flock-based check as authoritative source for daemon liveness.
The OS releases flocks when a process dies, so this is immune to PID reuse.
Changes:
- handleExistingSocket: Check daemon flock before waiting for socket
- acquireStartLock: Verify daemon lock is held before waiting
- handleStaleLock: Use flock check to detect stale startlocks
- lockfile/process_*.go: Add pid <= 0 check to prevent false positives
(PID 0 signals process group on Unix, not a specific process)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Warn if source issue is already closed
- Copy all issue fields (SourceRepo, Ephemeral, MolType, RoleType, Rig)
- Log warnings on label copy failures instead of silently ignoring
- Schedule auto-flush when source is local store
- Remove stale comment
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Users with conflicting git hooks (e.g., hooks that read the staging
area like GGA) can now set BEADS_NO_AUTO_STAGE=1 to disable auto-staging
and get check-and-block behavior instead.
Default behavior unchanged - auto-staging still works for most users.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds a new `bd mol progress` command that shows molecule progress using
indexed queries instead of loading all steps into memory. This makes it
suitable for mega-molecules with millions of steps.
Features:
- Efficient SQL-based counting via idx_dependencies_depends_on_type index
- Progress display: completed / total (percentage)
- Current step identification
- Rate calculation from closure timestamps
- ETA estimation
- JSON output support
New storage interface method: GetMoleculeProgress(ctx, moleculeID)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implements `bd refile <source-id> <target-rig>` which:
- Gets source issue via routing
- Creates new issue in target rig with same content
- Closes source with "Refiled to <new-id>"
- Appends "(Refiled from <old-id>)" to description
Target rig accepts rig names (beads), prefixes (bd-), or prefix shorthand (bd).
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Code review found that deleteBatchFallback was missing the text
reference update step (replacing "issue-id" with "[deleted:issue-id]"
in connected issues). This aligns the fallback path with the SQLite
batch delete behavior.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add CreateTombstone() to MemoryStorage and deleteBatchFallback() to
handle deletion when SQLite is not available. This fixes the error
"tombstone operation not supported by this storage backend" when
using bd delete with --no-db flag.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Merge PR #819 from justbry with improvements:
- Add --format obsidian option to bd export
- Generate Obsidian Tasks-compatible markdown
- Default output to ai_docs/changes-log.md
- Map status to checkboxes, priority to emoji, type to tags
- Support parent-child hierarchy with indentation
- Use official Obsidian Tasks format (🆔, ⛔ emojis)
Improvement over PR: replaced O(n²) bubble sort with slices.SortFunc
for date ordering.
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Co-Authored-By: justbry <justbu42@proton.me>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Two fixes for real-world Jira Cloud usage:
1. Add fields=*all to API request - v3 search/jql endpoint returns
only issue IDs by default, causing empty title/description imports
2. Add adf_to_text() converter for Atlassian Document Format - API v3
returns rich text fields as ADF JSON instead of plain text/HTML
Also documented:
- Silent auth failure gotcha (200 with empty results vs 401)
- ADF format explanation with conversion examples
Adds "!{{var}}" syntax for negated truthy checks in Step.Condition.
Useful for "skip this step if feature is enabled" patterns.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add compile-time step filtering based on formula variables:
- New EvaluateStepCondition function for {{var}} truthy and equality checks
- FilterStepsByCondition to exclude steps based on conditions
- Integration into pour, wisp, and mol bond commands
- Supports: {{var}}, {{var}} == value, {{var}} != value
Steps with conditions that evaluate to false are excluded from the
cooked formula, along with their children.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Implement runVersionSyncCheck() to compare version.go and default.nix
- Reports version mismatch as hard failure
- Gracefully skips if default.nix is missing
- Fix version mismatch: update default.nix from 0.37.0 to 0.42.0
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
- Add Warning field to CheckResult for soft failures
- Implement runNixHashCheck() that detects go.sum changes
- Warnings (⚠) shown separately from failures (✗)
- Warnings don't fail the overall preflight result
- Summary shows warning count separately
- Add test for warning state
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
- Add Skipped field to CheckResult for graceful handling of missing tools
- Implement runLintCheck() that runs golangci-lint run ./...
- Skip lint check gracefully if golangci-lint not in PATH
- Update summary to show skipped count separately
- Add test for skipped state
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
Fix test file to match the actual preflight.go implementation:
- Remove capitalizeFirst test (function doesn't exist)
- Rename PreflightResults -> PreflightResult
- Update truncation test to use actual truncateOutput function
- Update test data to match current Name format
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
- Add CheckResult and PreflightResults structs for check outcomes
- Implement runTestCheck() to execute go test -short ./...
- Wire up --check flag to actually run tests instead of placeholder
- Add ✓/✗ output formatting with command and truncated output
- Support --json flag for programmatic consumption
- Exit with non-zero code when tests fail
- Add tests for new preflight functionality
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add robustness improvements based on v0.42.0 release experience:
- Add preflight-sync step to catch beads issues early
- Split local-install into install + verify-local-install gate
- Add dev build instructions (go build + cp to ~/.local/bin)
- Improve daemon restart with version verification
- Add post-release-sync step for clean state
- Add verification checklist to release-complete step
Formula version bumped to 2.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
bd cook previously treated its argument as a file path only. Now it first
tries to load by name from the formula registry (.beads/formulas/), and
only falls back to parsing as a file path if that fails.
This enables commands like `bd cook beads-release` to work without
specifying the full path to the formula file.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Added lookupIssueMeta helper to fetch title and assignee before emitting
mutation events. This makes bd activity and gt feed show informative entries
like "gt-xxx updated · Title..." instead of just "gt-xxx updated".
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When .beads/redirect points to another location that crosses directory
boundaries, isExternalBeadsDir() can return true even when both paths
are in the same git repo. Previously, this would trigger the direct
commit mode, bypassing the configured sync.branch workflow.
Now we check hasSyncBranchConfig before entering the external path.
When sync.branch is configured, we skip direct-commit mode and use
the sync.branch worktree workflow instead, which properly handles
copying JSONL files regardless of where the source .beads lives.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Two fixes:
1. `bd init` chaining was broken - the code referenced `.old` hooks but
never actually renamed the existing hooks. Added the missing os.Rename().
2. `bd hooks install` now supports --chain flag to chain with existing hooks
(e.g., pre-commit framework). When used, existing hooks are renamed to
.old and bd hooks run will call them before the bd logic.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add redirect to GitignoreTemplate with explanatory comment
- Add redirect to requiredPatterns for outdated gitignore detection
- Add CheckRedirectNotTracked() to detect already-tracked redirect files
- Add FixRedirectTracking() to untrack via git rm --cached
- Register check in bd doctor under Git Integration category
- Add 6 tests for the new functionality
The redirect file contains a relative path that only works in the
original worktree. When committed, it causes warnings in other clones:
"Warning: redirect target does not exist"
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Cherry-picked website/, scripts/generate-llms-full.sh, and deploy-docs.yml
from joyshmitz's PR. Fixed workflow to trigger on main branch instead of
docs/docusaurus-site.
Features:
- Docusaurus documentation site with llms.txt support
- Environment-variable driven config (defaults to steveyegge org)
- Automated llms-full.txt generation from docs
- GitHub Pages deployment workflow
Co-authored-by: joyshmitz <joyshmitz@users.noreply.github.com>
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
Follow-up to #812 fix. When useSyncBranch is true, we always call
CommitToSyncBranch (bypassing gitHasBeadsChanges). If the worktree
has no actual changes, we now show "→ No changes to commit" for
consistent UX with the non-sync-branch code path.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add TestSet cases for main/master rejection in syncbranch_test.go
- Add TestInitWithSyncBranch to verify --branch flag works
- Add TestInitWithoutBranchFlag to verify no auto-detection (root cause)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Agent beads are identity/state tracking beads for agents, not actionable work items.
Cherry-picked from fix/actor-on-status-events
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Scaffolds bd preflight for PR readiness checks. Currently prints a
static checklist of common pre-PR validation items:
- Tests pass
- Lint passes
- No beads pollution
- Nix hash current
- Version sync
--check and --fix flags are documented but not yet implemented
(see bd-lfak.2 through bd-lfak.5 for roadmap).
(bd-lfak.1)
Cherry-picked from polecat/amber-1767146829144
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The root cause was isExternalBeadsDir() incorrectly identifying bare repo
worktrees as "external" repos. This caused bd sync to take the "external
beads dir" code path instead of the worktree-based sync branch path.
The bug: isExternalBeadsDir() compared syncbranch.GetRepoRoot() (which returns
incorrect values for bare repo worktrees) with getRepoRootFromPath() (which
uses --show-toplevel). These returned different values for bare repo
worktrees, causing local worktrees to be treated as external.
The fix: Use git rev-parse --git-common-dir for comparison instead of repo
root. This correctly identifies that worktrees of the same repo share the
same git directory, regardless of bare repo setup.
Also added:
- getGitCommonDir() helper function
- Tests for both getGitCommonDir and isExternalBeadsDir
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds atomic claim operation for work queue messages:
- New --claim flag on bd update command
- Sets assignee to claimer and status to in_progress
- Fails with clear error if already claimed by someone else
- Works in both daemon and direct modes
- Includes comprehensive tests for claim functionality
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
