Implements support for installing git hooks to a versioned directory
(.beads-hooks/) that can be committed to the repository and shared with
team members. This solves the team collaboration issue where hooks need
to be installed in pre-built containers.
Changes:
- Add --shared flag to 'bd hooks install' command
- Install hooks to .beads-hooks/ when --shared is used
- Automatically configure git config core.hooksPath
- Update help text to explain shared mode
Fixes#229
Fixes daemon and bd sync to honor BEADS_SYNC_BRANCH environment variable
as documented in PROTECTED_BRANCHES.md for CI/CD temporary overrides.
Changes:
- Updated internal/syncbranch.Get() to prioritize env var over DB config
- Both daemon sync and bd sync CLI now use syncbranch.Get()
- Added comprehensive tests for env var override behavior
- Validates branch names using git-style rules
This enables CI/CD workflows to override sync branch per-job without
mutating database config.
Based on PR #364 by Charles P. Cross <cpdata@users.noreply.github.com>
Co-authored-by: Charles P. Cross <cpdata@users.noreply.github.com>
Fixes#359
The daemon's sync branch logic was hardcoding the JSONL path to .beads/beads.jsonl, ignoring the dynamic discovery logic used elsewhere. This caused sync failures in repositories where the JSONL file has a different name (e.g., beads.base.jsonl, issues.jsonl).
Changes:
- Updated cmd/bd/daemon_sync_branch.go to use findJSONLPath() instead of hardcoded path
- Implemented relative path calculation for correct worktree placement
- Applied fix to both push (sync to worktree) and pull (sync from worktree) operations
This works together with PR #360 to fix team/protected branch sync issues.
Co-authored-by: Charles P. Cross <cpdata@users.noreply.github.com>
Fixes#358
The daemon was ignoring daemon.auto_commit and daemon.auto_push configuration values stored in the database unless the corresponding CLI flags were explicitly provided. This prevented bd init --team configuration from working as expected.
Changes:
- Modified cmd/bd/daemon.go to check database config when flags are not explicitly set
- Uses beads.FindDatabasePath() to locate the database and sqlite.New() to read config
- Only applies when starting daemon (skips for --stop, --status, --health, etc.)
Co-authored-by: Charles P. Cross <cpdata@users.noreply.github.com>
Fixes#362
The test TestCleanupMergeArtifacts_CommandInjectionPrevention was failing on Windows because it checks for /etc/passwd, which is a Unix-specific file that doesn't exist on Windows.
Added runtime.GOOS check to skip the /etc/passwd verification on Windows while maintaining the security check on Unix systems.
Windows test fixes (bd-web8):
- Add sanitizeMetadataKey() to replace colons with underscores
- Windows absolute paths (e.g., C:\...) contain colons that conflict with
metadata key separator ':'
- Update tests to use sanitized keys when checking metadata
- Tests now pass on Windows by auto-sanitizing path-based keys
Nix flake fixes (bd-8y1a):
- Update vendorHash in default.nix to match current Go module dependencies
- Hash mismatch was causing Nix build failures in CI
Test improvements:
- Rename TestUpdateExportMetadataInvalidKeySuffix to reflect new behavior
- Test now verifies sanitization instead of rejection
- All tests pass locally
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Previously bd doctor warned about using beads.jsonl vs issues.jsonl, but
users should be free to configure any name they want. The real problems are:
1. Having multiple JSONL files (sync/merge conflicts)
2. Configuration not matching reality
Changes:
- Rewrote CheckLegacyJSONLFilename to scan for ALL .jsonl files
- Now filters out merge artifacts (backup, .orig, .bak, etc.)
- Warns only when multiple real JSONL files exist
- Added CheckDatabaseConfig to detect when configured paths do not match
what actually exists on disk
- Updated tests to verify backup files are ignored
- Added test cases for custom JSONL filenames
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
The canonical beads database name is issues.jsonl. Tens of thousands of users
have issues.jsonl, and beads.jsonl was only used by the Beads project itself
due to git history pollution.
Changes:
- Updated bd doctor to warn about beads.jsonl instead of issues.jsonl
- Changed default config from beads.jsonl to issues.jsonl
- Reversed precedence in checkGitForIssues to prefer issues.jsonl
- Updated git merge driver config to use issues.jsonl
- Updated all tests to expect issues.jsonl as the default
issues.jsonl is now the canonical default; beads.jsonl is legacy
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Failure Type: Real
Root Cause: Test was not initializing the global rootCtx variable that getAssignedStatus depends on, causing it to return nil
Fix Applied: Added rootCtx initialization with proper cleanup using defer, matching the pattern used in other tests
Verification: All tests now pass (go test ./...)
Fixes bd-9f86-baseline-test
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Problem:
- TestFallbackToDirectModeEnablesFlush hung with database deadlock
- TestIdempotentImportNoTimestampChurn and TestImportMultipleUnchangedIssues also hung
- All three tests call flushToJSONL() or autoImportIfNewer() which require rootCtx
Solution:
Applied the same rootCtx initialization pattern from v0.24.1 (commit 822baa0)
to the remaining hanging tests:
- TestFallbackToDirectModeEnablesFlush in direct_mode_test.go
- TestIdempotentImportNoTimestampChurn in import_idempotent_test.go
- TestImportMultipleUnchangedIssues in import_idempotent_test.go
Results:
- Before: Tests hung for 5+ minutes with database deadlock
- After: All tests pass in ~0.1s each
Fixes#355🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Adds missing date range and priority filtering to bd search for feature
parity with bd list. Part of command standardization epic (bd-au0).
Changes:
- Add date range flags: --created-after/before, --updated-after/before,
--closed-after/before
- Add priority range flags: --priority-min, --priority-max
- Support multiple date formats (RFC3339, YYYY-MM-DD, etc.)
- Apply filters in both direct mode and daemon RPC mode
- Add comprehensive tests for new filters
Examples:
bd search "security" --priority-min 0 --priority-max 2
bd search "bug" --created-after 2025-01-01
bd search "refactor" --updated-after 2025-01-01 --priority-min 1
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Implements bd-au0.2, completing all P0 tasks in the command standardization epic.
Changes:
- Add --add-label, --remove-label, --set-labels flags to bd update
- Support multiple labels via repeatable flags
- Implement in both daemon and direct modes
- Add comprehensive tests for all label operations
The bd update command now supports:
bd update <id> --add-label <label> # Add one or more labels
bd update <id> --remove-label <label> # Remove one or more labels
bd update <id> --set-labels <labels> # Replace all labels
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Implements bd-au0.4: Standardize priority flag parsing across all commands.
Changes:
- Use registerPriorityFlag() for main priority flag (was IntP)
- Change priority-min/max from Int to String flags
- Add validation import and use ValidatePriority() for all priority parsing
- Update both direct mode and daemon RPC code paths
Now supports both formats consistently:
- Numeric: --priority 0, --priority-min 1, --priority-max 2
- P-format: --priority P0, --priority-min P1, --priority-max P2
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Git merge drivers only support three placeholders:
- %O (ancestor/base)
- %A (current version)
- %B (other branch's version)
The code was incorrectly using %L and %R, which don't exist in git,
causing them to be passed through literally and breaking JSONL merges.
Changes:
- Fixed merge driver config in init.go, merge.go, README.md, docs
- Added detection in bd doctor with clear error messages
- Added auto-fix in bd doctor --fix
- Added proactive warning in bd sync before git pull
- Added reactive error detection after merge failures
- Updated all tests to use correct placeholders
Now users get helpful guidance at every step:
1. bd doctor detects the issue
2. bd doctor --fix auto-corrects it
3. bd sync warns before pulling if misconfigured
4. Error messages suggest bd doctor --fix when merge fails
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Relocate documentation files to centralize all .md files in docs/ directory
(except those with historical precedent in specific locations like commands/,
examples/, integrations/, etc.).
Files moved:
- cmd/bd/doctor/claude.md -> docs/CLAUDE_INTEGRATION.md
- cmd/bd/MAIN_TEST_REFACTOR_NOTES.md -> docs/MAIN_TEST_REFACTOR_NOTES.md
- cmd/bd/TEST_SUITE_AUDIT.md -> docs/TEST_SUITE_AUDIT.md
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Adds --body as a hidden alias for --description in create/update commands,
following GitHub CLI convention for better agent ergonomics.
The --body flag:
- Works alongside existing --description and -d flags
- Hidden from help output to avoid clutter
- Validates conflicts when both flags used with different values
- Available in both 'bd create' and 'bd update' commands
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Implements a new 'bd count' command that provides efficient issue counting
with filtering and grouping capabilities.
Features:
- Basic count: Returns total count of issues matching filters
- All filtering options from 'bd list' (status, priority, type, assignee, labels, dates, etc.)
- Grouping via --by-* flags: status, priority, type, assignee, label
- JSON output support for both simple and grouped counts
- Both daemon and direct mode support
Implementation:
- Added OpCount operation and CountArgs to RPC protocol
- Added Count() method to RPC client
- Implemented handleCount() server-side handler with optimized bulk label fetching
- Created cmd/bd/count.go with full CLI implementation
Performance optimization:
- Pre-fetches all labels in a single query when using --by-label to avoid N+1 queries
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Updated TODO comments with proper beads issue IDs:
- bd-hdt: Implement auto-merge functionality
- bd-gqo: Implement daemon health checks
- bd-r46: Support --reason flag in daemon mode for reopen
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Debouncing functionality has been refactored from module-level variables
to the FlushManager, which is thoroughly tested in flush_manager_test.go.
The TestAutoFlushDebounce test referenced old variables (flushDebounce, etc.)
that no longer exist in the codebase. Rather than rewriting it to test the old
auto-flush code paths, we skip it and rely on the comprehensive FlushManager tests.
Fixes + Opts completed from MAIN_TEST_OPTIMIZATION_PLAN.md:
- ✅ Fix 1: rootCtx initialization (already done)
- ✅ Fix 2: Reduced sleep durations (already done)
- ✅ Opt 3: Fixed TestAutoFlushDebounce (marked obsolete)
All TestAuto* tests now pass in 1.9s.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Implements three quick fixes for users stuck in sandboxed environments
(e.g., Codex) where daemon cannot be stopped:
1. **--force flag for bd import**
- Forces metadata update even when DB is synced with JSONL
- Fixes stuck state caused by stale daemon cache
- Shows: "Metadata updated (database already in sync with JSONL)"
2. **--allow-stale global flag**
- Emergency escape hatch to bypass staleness check
- Shows warning: "⚠️ Staleness check skipped (--allow-stale)"
- Allows operations on potentially stale data
3. **Improved error message**
- Added sandbox-specific guidance to staleness error
- Suggests --sandbox, --force, and --allow-stale flags
- Provides clear fix steps for different scenarios
Also fixed:
- Removed unused import in cmd/bd/duplicates_test.go
Follow-up work filed:
- bd-u3t: Phase 2 - Sandbox auto-detection
- bd-e0o: Phase 3 - Daemon robustness enhancements
- bd-9nw: Documentation updates
Fixes#353 (Phase 1)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Analysis shows main_test.go is NOT a good candidate for shared DB pattern
due to global state manipulation and integration test characteristics.
Changes:
- Added MAIN_TEST_REFACTOR_NOTES.md documenting findings
- Fixed unused import in duplicates_test.go (from recent pull)
Key findings:
- 18 tests with 14 newTestStore() calls
- Tests manipulate global state (autoFlushEnabled, isDirty, etc.)
- Tests simulate workflows (flush, import) not just CRUD
- Shared DB causes deadlocks between flush ops and cleanup
- Integration tests need process-level isolation
Recommendation: Leave as-is or use Option 2 (grouped tests without
shared DB). Focus P2 efforts on integrity_test.go instead.
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
METRICS:
- Tests: 5 tests
- DB setups removed: 1 → 1 shared
- Tests needing DB: 1/5
- Savings: setupTestDB() → newTestStore()
DETAILS:
- TestFindDuplicateGroups: Pure in-memory logic (no DB)
- TestChooseMergeTarget: Pure in-memory logic (no DB)
- TestCountReferences: Pure in-memory logic (no DB)
- TestDuplicateGroupsWithDifferentStatuses: Pure in-memory (no DB)
- TestDuplicatesIntegration: Uses shared DB (was: setupTestDB)
Also fixed: Removed hardcoded IDs, let DB assign them.
All 5 tests pass!
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Refactored 3 smaller test files for test suite optimization:
FILES ANALYZED:
- validate_test.go (9 tests): NO DB needed - pure validation logic
- epic_test.go (3 tests): 2 DB setups → 1 shared pattern
- duplicates_test.go (5 tests): 1 old setupTestDB → newTestStore
CHANGES:
epic_test.go:
- Replaced 2× manual sqlite.New() with newTestStore()
- Removed duplicate SetConfig calls
- Removed manual Close/defer (handled by helper)
- -40 lines, +6 lines = net -34 lines
duplicates_test.go:
- Replaced old setupTestDB pattern with newTestStore
- Updated test data: bd-1/2/3 → test-1/2/3 (matches prefix)
- Added filepath import
- Removed cleanup() function pattern
- Net changes: proper shared pattern adoption
METRICS:
- Total files changed: 2/3 (validate_test.go needs no DB!)
- DB setups eliminated: 3 → 1 (epic: 2→1, duplicates: 1→0+shared)
- Lines saved: 30 net reduction
- Tests passing: 13/13 ✓
validate_test.go required NO changes - all tests are pure functions
with in-memory data. Even git conflict tests use temp files, not DB.
Part of Phase 2/3 test suite optimization.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Part of Phase 2/3 test suite optimization.
BEFORE:
- 10 separate test functions
- Each creating its own database
- 6 tests with DB setup overhead
- Total: 10 test executions
AFTER:
- 1 TestCompactSuite with 6 shared-DB subtests
- 4 standalone tests (no DB needed)
- Single DB setup for suite
- Total: 5 test functions
IMPACT:
- Lines: -135 (-22.4%)
- DB setups: 6 → 1 (6x reduction)
- Tests passing: 10/10 ✓
- Runtime: ~0.33s
The suite consolidates all DB-dependent tests:
- DryRun: eligibility check on closed issue
- Stats: mix of eligible/ineligible issues
- RunCompactStats: tests both normal and JSON output
- CompactStatsJSON: JSON formatting path
- RunCompactSingleDryRun: single issue eligibility
- RunCompactAllDryRun: multiple issue eligibility
Standalone tests (no DB):
- TestCompactValidation: flag validation logic
- TestCompactProgressBar: progress bar formatting
- TestFormatUptime: uptime display formatting
- TestCompactInitCommand: command initialization
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
CHANGES:
- Reduced from 15 DB setups to 4 shared DBs
- TestValidatePreExportSuite: 1 shared DB, 5 subtests
- TestValidatePostImport: No DB needed, kept as-is
- TestCountDBIssuesSuite: 1 shared DB, 1 subtest
- TestHasJSONLChangedSuite: 1 shared DB, 7 subtests (with unique keySuffixes)
- TestComputeJSONLHash: No DB needed, kept as-is
- TestCheckOrphanedDepsSuite: 1 shared DB, 2 subtests
PERFORMANCE:
- Before: 0.455s avg (15 DB setups)
- After: 0.373s avg (4 DB setups)
- Speedup: 1.22x (18% faster)
KEY LEARNINGS:
- Used unique keySuffix values for hasJSONLChanged subtests to avoid metadata pollution
- Metadata keys like last_import_hash are shared across subtests unless keySuffix is used
- TestValidatePostImport and TestComputeJSONLHash do not need DB at all
PATTERN:
Following create_test.go and dep_test.go pattern with shared DB setup
Part of Phase 2 test suite optimization (bd-1rh follow-up)
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
Refactored 6 high-priority test files to reduce database initializations
and improve test suite performance:
- create_test.go: Combined 11 tests into TestCreateSuite (11 DBs → 1 DB)
- dep_test.go: Combined into TestDependencySuite (4 DBs → 1 DB)
- comments_test.go: Combined into TestCommentsSuite (2 DBs → 1 DB)
- list_test.go: Split into 2 suites to avoid data pollution (2 DBs → 2 DBs)
- ready_test.go: Combined into TestReadySuite (3 DBs → 1 DB)
- stale_test.go: Kept as individual functions due to data isolation needs
Added TEST_SUITE_AUDIT.md documenting the refactoring plan, results,
and key learnings for future test development.
Results:
- P1 tests now run in 0.43 seconds
- Estimated 10-20x speedup
- All tests passing
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Identified and tagged obviously-slow integration tests with
`//go:build integration` to exclude them from default test runs.
This is step 1 of fixing test performance. The real fix is in
bd-1rh: refactoring tests to use shared DB setup instead of
creating 279 separate databases.
Tagged files:
- cmd/bd: 8 files (CLI tests, git ops, performance benchmarks)
- internal: 8 files (integration tests, E2E tests)
Issues:
- bd-1rh: Main issue tracking test performance
- bd-c49: Audit all tests and create grouping plan (next step)
- bd-y6d: POC refactor of create_test.go
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
This commit addresses critical code review findings from bd-dvd and bd-ymj fixes:
## Completed Tasks
### bd-ar2.1: Extract duplicated metadata update code
- Created `updateExportMetadata()` helper function
- Eliminated 22-line duplication between createExportFunc and createSyncFunc
- Single source of truth for metadata updates
### bd-ar2.2: Add multi-repo support to export metadata updates
- Added per-repo metadata key tracking with keySuffix parameter
- Both export and sync functions now update metadata for all repos
### bd-ar2.3: Fix tests to use actual daemon functions
- TestExportUpdatesMetadata now calls updateExportMetadata() directly
- Added TestUpdateExportMetadataMultiRepo() for multi-repo testing
- Fixed export_mtime_test.go tests to call updateExportMetadata()
### bd-ar2.9: Fix variable shadowing in GetNextChildID
- Changed `err` to `resurrectErr` to avoid shadowing
- Improves code clarity and passes linter checks
### bd-ar2.10: Fix hasJSONLChanged to support per-repo keys
- Updated hasJSONLChanged() to accept keySuffix parameter
- Reads metadata with correct per-repo keys
- All callers updated (validatePreExport, daemon import, sync command)
### bd-ar2.11: Use stable repo identifiers instead of paths
- Added getRepoKeyForPath() helper function
- Uses stable identifiers like ".", "../frontend" instead of absolute paths
- Metadata keys now portable across machines and clones
- Prevents orphaned metadata when repos are moved
## Files Changed
- cmd/bd/daemon_sync.go: Helper functions, metadata updates
- cmd/bd/integrity.go: hasJSONLChanged() with keySuffix support
- cmd/bd/sync.go: Updated to use getRepoKeyForPath()
- cmd/bd/*_test.go: Tests updated for new signatures
- internal/storage/sqlite/hash_ids.go: Fixed variable shadowing
## Testing
All export, sync, and integrity tests pass.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Bug 1 (bd-dvd): GetNextChildID now attempts parent resurrection from JSONL
before failing. Added TryResurrectParent call to match CreateIssue behavior.
Bug 2 (bd-ymj): Export now updates last_import_hash metadata to prevent
'JSONL content has changed' errors on subsequent exports.
Files changed:
- internal/storage/sqlite/hash_ids.go: Add resurrection attempt
- cmd/bd/daemon_sync.go: Add metadata updates after export
- Tests added for both fixes
- Fixed pre-existing bug in integrity_content_test.go
Follow-up work tracked in epic bd-ar2 (9 issues for improvements).
Fixes GH #334
Adds a new `bd search` command optimized for quick text searches,
addressing the issue where Claude using MCP bd list consumes 30k tokens.
Features:
- Searches across title, description, and ID with OR logic
- Default limit of 50 results (vs unlimited for bd list)
- Supports key filters: --status, --assignee, --type, --label
- Works in both daemon and direct modes
- Provides --json and --long output formats
Examples:
bd search "performance" --status open
bd search "database" --label backend --limit 10
bd search "bd-5q" # Search by partial ID
This provides a more efficient alternative to bd list when users
just want to find issues quickly without loading all results.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
The function was declared twice:
- Line 80: New version (simpler, no error wrapping)
- Line 390: Old version (with error wrapping)
This caused compilation failure in CI. Removed the old declaration at line 390.
Also fixed integrity_content_test.go to pass context.Context to sqlite.New()
as required by the updated API.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
