The sync.branch workflow copies JSONL to main working dir without
committing, which blocked bd sync --merge (required clean working dir).
Changes:
- Exclude .beads/ from dirty check in mergeSyncBranch
- Restore .beads/ to HEAD before merge to prevent conflicts
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Root cause: The merge driver matched issues by IssueKey (ID+CreatedAt+CreatedBy).
When timestamp precision differed (e.g., with/without nanoseconds), the same
issue was treated as two different issues, causing both tombstone and closed
versions to appear in the merge result.
Fix: Added ID-based fallback matching in merge3WayWithTTL. When key-based
matching fails but the same ID exists in the other side, use that for merging.
Also track processed IDs to prevent duplicates.
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- IsExpired(): Negative TTL means immediately expired (for --hard mode)
- IsExpired(): ClockSkewGrace only added for TTLs > 1 hour
- bd cleanup --hard: Use negative TTL to prune freshly created tombstones
- bd delete --hard: New flag to immediately prune tombstones from JSONL
- Import: Add early tombstone check before all phases to prevent resurrection
The early tombstone check prevents ghost issues from being created when
tombstones exist in the DB. However, a deeper git merge issue (bd-ncwo)
can still cause resurrection when remote's status:closed wins the merge.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add bd cleanup --ephemeral flag for transient message cleanup (bd-kwro.9)
- Add Ephemeral filter to IssueFilter type
- Add ephemeral filtering to SQLite storage queries
Tests (bd-kwro.10):
- Add internal/hooks/hooks_test.go for hook system
- Add cmd/bd/mail_test.go for mail commands
- Add internal/storage/sqlite/graph_links_test.go for graph links
Documentation (bd-kwro.11):
- Add docs/messaging.md for full messaging reference
- Add docs/graph-links.md for graph link types
- Update AGENTS.md with inter-agent messaging section
- Update CHANGELOG.md with all bd-kwro features
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- bd mail reply: reply to messages with thread linking via replies_to
- bd show --thread: display full conversation threads
- bd relate/unrelate: bidirectional relates_to links for knowledge graph
- bd duplicate --of: mark issues as duplicates with auto-close
- bd supersede --with: mark issues as superseded with auto-close
- Hooks system: on_create, on_update, on_close, on_message in .beads/hooks/
- RPC protocol: added Sender, Ephemeral, RepliesTo fields to CreateArgs/UpdateArgs
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add `bd mail send/inbox/read/ack` commands for inter-agent messaging
- Implement GetIdentity() with priority chain: flag > BEADS_IDENTITY env > config.yaml > git user.name > hostname
- Messages are stored as issues with type=message for git-native communication
- Support both daemon and direct mode for all mail operations
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- errcheck: explicitly discard error returns for git config --unset
- gosec G304: add nolint for safe file read from hardcoded list
- gosec G306: add nolint for .gitattributes (must be world-readable)
- unparam: remove unused gitDir param, use _ for unused ctx
- unparam: change functions with always-nil error returns to void
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The 0.30.2 bump was done manually and missed several files:
- .claude-plugin/plugin.json (was 0.30.0)
- .claude-plugin/marketplace.json (was 0.30.0)
- npm-package/package.json (was 0.30.1)
- integrations/beads-mcp/pyproject.toml (was 0.30.1)
- integrations/beads-mcp/src/beads_mcp/__init__.py (was 0.30.1)
Added scripts/check-versions.sh and CI job to prevent this in future.
Always use scripts/bump-version.sh for version bumps.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Update version in version.go, default.nix, hook templates
- Add CHANGELOG.md entry for v0.30.2
- Add v0.30.1 and v0.30.2 to versionChanges in info.go
- Remove stale internal/deletions import from integration test
(fixes CI failure from bd-fom refactor)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Changes bd prime output from "no TodoWrite" to a nuanced hybrid approach
that matches skills/beads/SKILL.md guidance:
- Track strategic work in beads (multi-session, dependencies, discovered work)
- TodoWrite is fine for simple single-session linear tasks
- When in doubt, prefer bd—persistence you don't need beats lost context
Fixes#499🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Fixes Windows build by adding platform-specific inode handling via build tags. Also fixes gosec lint warnings in migrate_tombstones.go.
Thanks @deblasis!
Refine ExtractIssuePrefix to better distinguish hash IDs from English
words in multi-part issue IDs. Hash suffixes now require digits or be
exactly 3 chars, preventing "test", "gate", "part" from being treated
as hashes. This fixes prefix extraction for IDs like "vc-baseline-test".
Also updates git hooks to use -q flag and adds AGENTS.md documentation.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The deletions.jsonl file contained merge conflicts and was causing
bd init/reset failures on fresh clones. Since we've migrated to
tombstones, these files are no longer needed.
Fixes GH#590
Co-Authored-By: Matt Wilkie <maphew@gmail.com>
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- Add TypeMessage issue type for inter-agent communication
- Add 6 new Issue fields: Sender, Ephemeral, RepliesTo, RelatesTo,
DuplicateOf, SupersededBy
- Add 4 new dependency types: replies-to, relates-to, duplicates, supersedes
- Create migration 019_messaging_fields with indexes
- Update all CRUD operations across storage layer
- Fix reset_test.go to use correct function names
- Fix redundant newline lint error in sync.go
Closes: bd-kwro.1
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Update version across all packages:
- Go CLI (cmd/bd/version.go)
- Python MCP server (pyproject.toml, __init__.py)
- npm package (package.json)
Add comprehensive CHANGELOG entry with 14 features, 14 fixes,
security updates, and community contributor credits.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Two swarm merge bugs fixed:
1. StatusResponse in protocol.go lost daemon config fields (AutoCommit, AutoPush,
LocalMode, SyncInterval, DaemonMode) during merge 60ae6586. These were added in
4e87ae18 but lost when merging bd-zbyb-gusher which had an outdated protocol.go.
2. Duplicate --type flag definition on updateCmd in show.go causing panic on startup.
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Co-Authored-By: Claude <noreply@anthropic.com>
Adds the ability to permanently remove tombstones before the default 30-day TTL:
- bd cleanup --hard --older-than N: prune tombstones older than N days
- bd cleanup --hard: prune all tombstones
This bypasses sync safety for scenarios like cleaning house after extended
absence where resurrection from old clones is not a concern.
Closes: bd-adoe
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Co-Authored-By: Claude <noreply@anthropic.com>
Add bd sync --check command that performs pre-sync integrity checks
without modifying state:
1. Force push detection: Detects when sync branch has diverged from
remote, indicating a potential force push
2. Prefix mismatch detection: Scans JSONL for issues that don't match
the configured prefix
3. Orphaned children detection: Finds issues with parent references
to non-existent issues
Outputs diagnostic with actionable suggestions for each problem found.
Exits with code 1 if any problems are detected.
Implements bd-hlsw.1: Pre-sync integrity check
The ExtractIssuePrefix function was falling back to first-hyphen
extraction when the suffix didn't look like a hash (e.g., 4+ char
words without digits). This broke prefixes like 'hacker-news' where
an issue ID 'hacker-news-test' would incorrectly extract 'hacker'.
Fix: Always use last-hyphen extraction for alphanumeric suffixes.
Only fall back to first-hyphen for non-alphanumeric suffixes.
Examples:
- 'hacker-news-test' -> 'hacker-news' (was: 'hacker')
- 'me-py-toolkit-abc' -> 'me-py-toolkit' (was: 'me')
- 'vc-baseline-hello' -> 'vc-baseline' (was: 'vc')
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When bd sync pushes from the sync-branch worktree, the pre-push hook
would detect uncommitted JSONL changes and suggest running bd sync -
which is circular since that's what the user is already doing.
Fix: Set BD_SYNC_IN_PROGRESS=1 environment variable when pushing from
worktree, and update pre-push hook to skip checks when this var is set.
Updated files:
- internal/syncbranch/worktree.go: Set env var on push command
- cmd/bd/templates/hooks/pre-push: Check for env var and exit early
- examples/git-hooks/pre-push: Same check
- .beads-hooks/pre-push: Same check
Adds a new `bd reset` command that completely removes beads from a
repository, automating the manual uninstall process.
The command:
1. Stops any running daemon
2. Removes git hooks installed by beads
3. Removes the merge driver configuration
4. Removes beads entry from .gitattributes
5. Deletes the .beads directory (ALL ISSUE DATA)
6. Removes the sync worktree (if exists)
Safety features:
- Requires --confirm <remote> to prevent accidental data loss
- Supports --dry-run to preview what would be removed
- Provides clear warnings about permanent data deletion
Closes GH#505
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When sync.branch is set to the current branch (e.g., main), bd sync
now commits directly instead of failing with a worktree error.
Changes:
- sync.go: Detect when current branch == sync branch and skip worktree
- sync.go: Show appropriate messages for direct-mode commits/pulls
- doctor.go: Change from Error to OK status when on sync branch
The fix allows users to work directly on the sync branch without
having to switch to a different branch for bd sync to work.
Closes: GH#519
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Fixes GH#409 - Documentation inconsistently referred to beads.jsonl
as the canonical filename when issues.jsonl has been the default
since v0.25.1 (bd-6xd).
Updated files:
- docs/ARCHITECTURE.md
- docs/CLI_REFERENCE.md
- docs/PROTECTED_BRANCHES.md
- docs/ADVANCED.md
- docs/GIT_INTEGRATION.md
- docs/MULTI_REPO_AGENTS.md
- docs/MULTI_REPO_MIGRATION.md
- docs/TROUBLESHOOTING.md
- examples/*/README.md
- skills/beads/references/CLI_REFERENCE.md
Note: beads.jsonl is still supported for backward compatibility.
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