Created 7 new beads to track TODOs that were previously inline comments:
- bd-7l27: Integrate migration detection into bd doctor (5 files)
- bd-6x6g: Add multi-repo target repo switching in bd create
- bd-ag35: Add daemon RPC endpoints for config and stale check
- bd-2dwo: Remove deprecated daemon logger function
- bd-0qx5: Implement Jira issue timestamp comparison for sync
- bd-7zka: Implement formula features (repeat, for_each, branch, gate, split)
- bd-h048: Refactor sync_test to use direct import logic
Updated 16 TODO comments to include bead ID references for tracking.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Extracted 8 helper functions from the monolithic flushToJSONLWithState:
- recordFlushFailure/recordFlushSuccess: Failure tracking and counter management
- readExistingJSONL: Parse existing JSONL file for incremental merging
- fetchAndMergeIssues: Fetch dirty issues from DB and merge into map
- filterWisps: Remove ephemeral (wisp) issues from export
- filterByMultiRepoPrefix: Multi-repo prefix filtering for non-primary repos
- updateFlushExportMetadata: Store hashes and timestamps after export
- getIssuesToExport: Determine full vs incremental export issue list
Main function now reads as a clear pipeline:
1. Validate integrity -> 2. Get issues -> 3. Read existing JSONL
4. Merge from DB -> 5. Filter wisps -> 6. Filter by prefix
7. Write atomically -> 8. Update metadata
Benefits:
- Each helper is single-responsibility and testable
- Main function reduced from ~280 to ~94 lines
- Logic is clearly separated and documented
- Easier to understand and maintain
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Replaced three near-identical functions with a single unified collectSteps()
that uses a callback strategy for label handling:
- Removed collectStepsRecursive() (DB version)
- Removed collectStepsToSubgraph() (in-memory version)
- Removed collectStepIDMappings() (now handled by unified function)
The new collectSteps() function:
- Takes optional labelHandler callback for DB path (extracts labels separately)
- Takes optional issueMap for in-memory path
- Always builds idMapping for dependency resolution
- Eliminates ~60 lines of duplicated code
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Extracted duplicated switch statement for mapping step type strings to
types.IssueType into a single helper function. This removes code
duplication between collectStepsToSubgraph() and collectStepsRecursive().
The new stepTypeToIssueType() function:
- Converts 'task', 'bug', 'feature', 'epic', 'chore' to types
- Returns types.TypeTask for empty or unrecognized types
- Used by both functions with children-override-to-epic logic preserved
Clarifies the relationship between bd CLI, Claude Code Plugin,
and MCP server. Most users only need the CLI.
Closes#782🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Clarifies trade-offs between Homebrew, npm, script, go install,
and source builds. Homebrew is recommended as the default.
Closes#779🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- migrate-* commands → subcommands of `bd migrate`
- relate/unrelate → subcommands of `bd dep`
- daemons subcommands → available under `bd daemon`
- comment alias → hidden with deprecation warning
All old commands still work with deprecation warnings for backwards
compatibility. Reduces visible top-level commands from ~73 to 66.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Perles is built using Go not Node.js this got mixed up in the recent
migration to the community tools page. Also slights changes to the tools
description.
New commands and features:
- bd worktree for parallel development
- bd slot commands for agent bead slot management
- bd agent state for ZFC-compliant state reporting
- bd doctor --deep for full graph integrity validation
- Agent bead support (type=agent, type=role, migration 030)
- Computed .parent field in JSON output
- Auto-bypass daemon for wisp operations
- Pour warning for vapor-phase formulas
Performance:
- O(2^n) → O(V+E) cycle detection (GH#775)
Fixes:
- Import hash mismatch warnings
- Test updates for version tracking thresholds
- Migration test updated for new agent schema fields
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Now shows:
- Truncated title (40 chars max) after issue ID
- Assignee with @ prefix when present
- Format: 'bd-xxx completed · Title here... @assignee'
Also changed 'in_progress' to 'started' for cleaner output.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Strip (bd-xxx), (gt-xxx) suffixes from code comments and changelog
entries. The descriptions remain meaningful without the ephemeral
issue IDs.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Create docs/COMMUNITY_TOOLS.md with curated list of community-built tools ranked by activity
- Include tools from README.md and GitHub discussion #276
- Organize into categories: Terminal UIs, Web UIs, Editor Extensions, Native Apps, Historical
- Update README.md to reference the new dedicated page
Replace the recursive SQL CTE in DetectCycles with Go-layer DFS using
shared visited set. The previous implementation enumerated all paths
through the dependency graph, causing exponential blowup with diamond
patterns (multiple issues depending on the same target).
Changes:
- Add loadDependencyGraph() to load deps as adjacency list in one query
- Implement DFS cycle detection with recStack for back-edge detection
- Add normalizeCycle() for consistent cycle deduplication
- Add DetectCycles-specific benchmarks (Linear, Dense, Tree graphs)
- Use direct SQL INSERT in benchmarks to bypass AddDependency overhead
Performance improvement on dense graph (500 nodes, 2500 edges):
- Before: >120s timeout
- After: 1.6ms
Benchmarks:
- DetectCycles_Linear_1000: 0.84ms (1000 nodes, 999 edges)
- DetectCycles_Dense_500: 1.59ms (500 nodes, ~2500 edges)
- DetectCycles_Tree_1000: 0.85ms (1000 nodes, 999 edges)
Add a --deep flag to bd doctor that runs comprehensive graph integrity
checks on the beads database:
- Parent consistency: verify parent-child deps point to existing issues
- Dependency integrity: all dependencies reference valid issues
- Epic completeness: find epics ready to close (all children closed)
- Agent bead integrity: validate agent beads have valid state values
- Mail thread integrity: verify thread_id references exist
- Molecule integrity: check molecules have valid parent-child structures
The deep validation mode warns about potential slowness on large databases
and provides both human-readable and JSON output formats.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Wisp operations (mol wisp *, mol burn, mol squash) and commands operating on
ephemeral issue IDs (bd-eph-*, gt-eph-*, eph-*) now auto-bypass the daemon.
Since wisps are ephemeral (Ephemeral=true) and never exported to JSONL,
the daemon cannot help with them anyway. This eliminates the need to manually
add --no-daemon for every wisp operation.
Changes:
- Add isWispOperation() helper to detect wisp commands and ephemeral IDs
- Add FallbackWispOperation constant for daemon status tracking
- Insert wisp detection in PersistentPreRunE daemon connection logic
- Update error messages in wisp.go, mol_burn.go, mol_squash.go
- Add comprehensive unit tests for isWispOperation()
Add agent commands for self-reporting state:
- bd agent state <agent> <state>: Update agent state and last_activity
- bd agent heartbeat <agent>: Update last_activity timestamp only
- bd agent show <agent>: Display agent bead details
States: idle, spawning, running, working, stuck, done, stopped, dead
Also adds AgentState and LastActivity fields to UpdateArgs in RPC protocol.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add Phase field to Formula type to indicate recommended instantiation phase
- Add warning in 'bd mol pour' when formula has phase="vapor"
- Improve pour/wisp help text with clear comparison of when to use each
- Add CheckPersistentMolIssues doctor check to detect mol- issues in JSONL
- Update beads-release.formula.json with phase="vapor"
This helps prevent accidental persistence of ephemeral workflow issues.
- Add CheckReadonly calls to create/remove commands
- Add cleanup on partial failure (remove worktree if beads setup fails)
- Prevent removing main repository as worktree
- Fix gitignore entry to use relative path from repo root
- Remove misleading stash check (stashes are repo-wide, not per-worktree)
- Populate Name field in WorktreeInfo struct
- Add #nosec comments for exec.Command and file reads
🤖 Generated with Claude Code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds user-facing worktree management commands:
- bd worktree create <name> - creates worktree with beads redirect
- bd worktree list - shows all worktrees and their beads state
- bd worktree remove <name> - removes worktree with safety checks
- bd worktree info - shows current worktree info
The create command automatically sets up .beads/redirect to point to
the main repos .beads directory, ensuring all worktrees share
the same issue database. This enables parallel development with
multiple agents or features.
🤖 Generated with Claude Code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add slot management commands:
- bd slot set <agent> <slot> <bead> - set slot (error if occupied)
- bd slot clear <agent> <slot> - clear slot
- bd slot show <agent> - show all slots
These enforce cardinality constraints for agent bead slots.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Update ParseIssueType to use canonical types.IsValid() (includes agent, role, gate, message)
- Add ValidateAgentID function to validate gt-<role>[-<rig>[-<name>]] pattern
- Wire up validation in create.go when --type=agent with explicit ID
- Update --type flag help text to include agent and role types
- Add comprehensive test coverage for agent ID validation
Agent identity fields on Issue struct:
- HookBead: reference to current work (0..1 cardinality)
- RoleBead: reference to role definition bead
- AgentState: self-reported state (idle|spawning|running|working|stuck|done|stopped|dead)
- LastActivity: timestamp for heartbeat/timeout detection
- RoleType: agent type (polecat|crew|witness|refinery|mayor|deacon)
- Rig: rig name (empty for town-level agents)
Also adds:
- AgentState type with IsValid() method
- Validation for agent state in Issue.Validate()
- Agent fields included in content hash
This enables the agent-as-bead architecture where agents are tracked
as first-class beads with self-reported state.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add TypeAgent and TypeRole to IssueType enum in types.go
- Update IsValid() to include new types
- Add UI styles with distinct colors (cyan for agent, green for role)
- Add RenderType cases for consistent display
This enables creating agent beads (identity) and role beads (behavior
definitions) as part of the agent-as-bead architecture.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When running the release workflow, users often stage CHANGELOG.md and info.go
changes before running bump-version.sh. Previously, the script would error
on uncommitted changes with --commit.
Now:
- --allow-staged permits pre-staged CHANGELOG.md and cmd/bd/info.go
- Script detects these as expected release files and includes them in commit
- Provides helpful error message if other files are staged
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The import command was only updating jsonl_content_hash, not jsonl_file_hash.
After sync imports JSONL but skips re-export (because DB matches JSONL),
the jsonl_file_hash remained stale, causing validateJSONLIntegrity() to
emit spurious "JSONL file hash mismatch" warnings on subsequent operations.
Now import also calls SetJSONLFileHash with the same hash value, keeping
both hashes in sync and eliminating the false warnings.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
