When BEADS_DIR environment variable points to a separate git repository,
bd sync previously failed with "fatal: 'main' is already used by worktree"
because it computed repoRoot from cwd instead of the beads directory.
This fix detects when beads dir is in a different git repo than cwd and
uses direct git operations (add/commit/push/pull) instead of worktree-based
sync, bypassing the problematic worktree creation entirely.
Cherry-picked from PR #533 (cleaned up unrelated changes).
Co-Authored-By: dand-oss <dand-oss@users.noreply.github.com>
The sanitizeJSONLWithDeletions function was incorrectly removing ALL issues
whose ID appeared in deletions.jsonl, including tombstones. This caused:
1. Second sync after delete: tombstone removed from JSONL by sanitize
2. Import sees ID in deletions.jsonl but no tombstone in JSONL
3. Import creates new tombstone via convertDeletionToTombstone
4. UNIQUE constraint error: tombstone already exists in DB
The fix checks the issue status and only removes non-tombstone issues.
Tombstones are the proper representation of deletions and must be preserved.
Added test: TestSanitizeJSONLWithDeletions_PreservesTombstones
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The importer was not seeing tombstones when building the dbByID map,
causing it to treat tombstone IDs as "new" issues. This led to UNIQUE
constraint violations during INSERT.
- Include tombstones in SearchIssues call (IncludeTombstones: true)
- Skip tombstones when matching by ID instead of trying to update them
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add two new doctor checks for tombstone health:
1. Updated Deletions Manifest check:
- Warns when legacy deletions.jsonl has entries (suggests migration)
- Shows "Migrated to tombstones" when .migrated file exists
- Shows "Using inline tombstones" for new repos
2. New Tombstones check:
- Reports total tombstone count
- Warns about expired tombstones (older than 30 days)
- Shows tombstones expiring within 7 days
- Suggests 'bd compact' to prune expired tombstones
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When CreateTombstone was called on a closed issue, the CHECK constraint
(status = closed) = (closed_at IS NOT NULL) was violated because
closed_at was not cleared. Now setting closed_at = NULL in the UPDATE.
Added regression test for creating tombstone from closed issue.
Fixes: bd-fi05
Generated with Claude Code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
RAM disk approach proved insufficient for Windows test speedup:
- t.Chdir() panics on ImDisk drives
- Temp-only RAM disk provides marginal improvement (~50%)
- Still times out at 30 minutes
Reverted to simple Windows tests with continue-on-error.
Created bd-bmev to replace with smoke tests instead.
Closed bd-5we as RAM disk approach didn't work.
Reorganize the claude-code-skill into a publishable plugin that can be
installed through the beads-marketplace. Users can now reference the
'beads' skill right after installing the marketplace.
Co-authored-by: Steve Yegge <steve.yegge@gmail.com>
The deleted_at column was defined as TEXT in the schema but code was
trying to scan into sql.NullTime. The ncruces/go-sqlite3 driver only
auto-converts TEXT to time.Time for columns declared as DATETIME/DATE/
TIME/TIMESTAMP. For TEXT columns, it returns raw strings which
sql.NullTime.Scan() cannot handle.
Added parseNullableTimeString() helper that manually parses time strings
and changed all deletedAt variables from sql.NullTime to sql.NullString.
Fixes import failure: "sql: Scan error on column index 22, name
deleted_at: unsupported Scan, storing driver.Value type string into
type *time.Time"
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The previous fix didn't handle the multi-repo case - it used bare
'jsonl_content_hash' key but daemon uses 'jsonl_content_hash:<repoKey>'.
Now properly computes repoKey for multi-repo support.
* fix(daemon): check for stale startlock before waiting 5 seconds
When a previous daemon startup left behind a bd.sock.startlock file
(e.g., from a crashed process), the code was waiting 5 seconds before
checking if the lock was stale. This caused unnecessary delays on
every bd command when the daemon wasn't running.
Now checks if the PID in the startlock file is alive BEFORE waiting.
If the PID is dead or unreadable, the stale lock is cleaned up
immediately and lock acquisition is retried.
Fixes ~5s delay when startlock file exists from crashed process.
* perf: add benchmarks for large descriptions, bulk operations, and sync merge
Added three new performance benchmarks to identify bottlenecks in common operations:
1. BenchmarkLargeDescription - Tests handling of 100KB+ issue descriptions
- Measures string allocation/parsing overhead
- Result: 3.3ms/op, 874KB/op allocation
2. BenchmarkBulkCloseIssues - Tests closing 100 issues sequentially
- Measures batch write performance
- Result: 1.9s total, shows write amplification
3. BenchmarkSyncMerge - Tests JSONL merge cycle with creates/updates
- Simulates real sync operations (10 creates + 10 updates per iteration)
- Result: 29ms/op, identifies sync bottlenecks
Added BENCHMARKS.md documentation describing:
- How to run benchmarks with various options
- All available benchmark categories
- Performance targets on M2 Pro hardware
- Dataset caching strategy
- CPU profiling integration
- Optimization workflow
This completes performance testing coverage for previously unmeasured scenarios.
* docs: clarify daemon lock acquisition logic in comments
Improve comments to clarify that acquireStartLock does both:
1. Immediately check for stale locks from crashed processes (avoids 5s delay)
2. If PID is alive, properly wait for legitimate daemon startup (5s timeout)
No code changes - only clarified comment documentation for maintainability.
---------
Co-authored-by: Steve Yegge <steve.yegge@gmail.com>
After bd sync completes with sync.branch mode, the daemon or next CLI
command could see a hash mismatch between the restored JSONL file and
the DB metadata, triggering auto-import which then schedules re-export,
dirtying the working directory.
Two fixes:
1. sync.go: Update jsonl_content_hash after restoreBeadsDirFromBranch
to match the restored file hash
2. daemon_sync.go: Update jsonl_content_hash after performAutoImport
succeeds (was missing, unlike CLI import path)
Fixes: bd-lw0x, bd-hxou
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Can't checkout directly to R: drive. Instead:
1. Checkout normally
2. Use copy-workspace: true to copy to RAM disk
3. Run build/tests from R: working directory
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Move everything to RAM disk for maximum I/O speedup:
- Setup RAM disk BEFORE checkout
- Checkout source code directly to R:\work
- Set TEMP/TMP/GOCACHE/GOMODCACHE at job level
- Run build and tests from RAM disk working directory
This ensures ALL file operations happen on RAM, not just temp files.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat(config): add no-install-hooks config to disable git hook installation
Add `no-install-hooks` boolean config that prevents git hook installation
during `bd init`. This can be set via:
- Environment variable: BD_NO_INSTALL_HOOKS=1
- Global config: ~/.config/bd/config.yaml with `no-install-hooks: true`
- Local config: .beads/config.yaml with `no-install-hooks: true`
The existing `--skip-hooks` flag continues to work and takes precedence.
Default behavior unchanged: hooks install by default.
* docs: add no-install-hooks to configuration documentation
- Add no-install-hooks to Supported Settings table in CONFIG.md
- Add example in config file section
- Add "Disabling Hook Installation" section to GIT_INTEGRATION.md
with examples for flag, env var, and config file methods
Use chad-golden/setup-ramdisk@v1 to create a 4GB RAM disk (R:) on
Windows runners. Benchmarks show ~1750x faster IOPS compared to
the C: drive (247k vs 140 IOPS).
Redirect all test temp files, GOCACHE, and GOMODCACHE to the RAM
disk. This should dramatically speed up SQLite tests and other
disk-intensive operations that were causing 30+ minute timeouts.
Closes bd-5we
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The .beads/.gitignore now ignores everything by default and explicitly
whitelists tracked files. This fixes confusion about which files to
commit when using protected branches workflow.
Changes:
- Use `*` to ignore all by default, then `!file` to whitelist
- Fix config.json -> config.yaml (wrong filename in negation)
- Update doctor check to validate new patterns
- Update PROTECTED_BRANCHES.md documentation
- Simplify git add instructions to just `git add .beads/`
Fixes#473🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
These tests fail on Windows because:
- os.Symlink requires elevated privileges
- Unix-style permissions (0700, 0600) don't apply
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Update Makefile install target to extract and pass git commit/branch via ldflags
- Add -X main.Commit and -X main.Branch to all build configurations in .goreleaser.yml
- Create scripts/install.sh helper for explicit version control during installation
- Add comprehensive tests for commit/branch resolution and output formatting
Fixes github #503: 'bd version' now reports as-built commit hash and branch
information regardless of installation method (make install, go install, or
released binaries from goreleaser).
Implements the bd reset command for GitHub issue #479:
- CLI command with flags: --hard, --force, --backup, --dry-run, --skip-init, --verbose
- Impact summary showing issues/tombstones to be deleted
- Confirmation prompt (skippable with --force)
- Colored output for better UX
- Unit tests for reset.go and git.go
- Fix: use --force flag in git rm to handle staged files
Part of epic bd-aydr.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
On macOS, downloaded binaries with ad-hoc signatures from other machines
trigger Gatekeeper malware checks on every invocation, causing slowness.
Re-signing with a local ad-hoc signature avoids this.
Fixes#466🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Clarify that `bd ready` shows issues ready to work on (#512)
- Update git hooks install command from deprecated script to `bd hooks install` (#513)
- Fix Claude Code plugin local install: use `./beads` not `.`, clarify shell vs CC commands (#514)
Fixes#512, #513, #514🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add mise (polyglot runtime manager) as an installation option using the
ubi backend to install from GitHub releases.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Update `/bd-create` and `/bd-ready` to `/beads:create` and `/beads:ready`
in the claude-code-skill README. This was missed in PR #467.
Relates to #463🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Marketplace-installed plugins use the beads: prefix instead of the
old bd- prefix. Updated all documentation and examples to reflect the
current slash command naming.
Fixes#463
- Remove Force from core ResetOptions (CLI concern)
- Clarify file locations (internal/reset/)
- Add ImpactSummary struct with open/closed counts
- Note backup dirs should be gitignored
- Add --verbose flag to CLI spec
- Clarify TDD approach for unit tests
- Add bd-aydr.9 for gitignore template update
