When running `bd sync --import-only` while the daemon is connected, the command
fails with "no database store available for inline import".
Root cause:
1. PersistentPreRun connects to daemon and returns early without initializing
the store global
2. sync command closes the daemon connection (for consistency)
3. sync --import-only calls importFromJSONLInline which requires store != nil
4. Without ensureStoreActive(), the store is never initialized after daemon disconnect
Fix: Call ensureStoreActive() after closing the daemon connection in sync.go.
This ensures the local SQLite store is initialized for all sync operations
that need direct database access.
- Add ensureStoreActive() call after daemon disconnect in sync.go
- Add test documenting the bug and verifying the fix
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add AllowStale field to ListArgs struct to support resilient hook detection.
When set, callers signal they accept potentially stale data rather than
failing on staleness check errors.
This enables gastown checkSlungWork() to fall back gracefully when the
beads database is out of sync with JSONL (common after concurrent agent syncs).
- Add AllowStale bool to ListArgs in internal/rpc/protocol.go
- Pass --allow-stale flag through to RPC in cmd/bd/list.go
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
Add new command to find molecules where a gate has closed and the workflow
is ready to resume:
- `bd ready --gated` - Flag on existing ready command
- `bd mol ready` - Subcommand for discoverability
The command finds molecules where:
1. A gate bead (type=gate) has been closed
2. The step blocked by that gate is now ready
3. The molecule is not currently hooked by any agent
This enables the Deacon patrol to discover and dispatch gate-ready
molecules without explicit waiter tracking, supporting async molecule
resume workflows.
Includes 5 tests verifying:
- No false positives when no gates exist
- Detection of molecules with closed gates
- Filtering out molecules with open gates
- Filtering out already-hooked molecules
- Handling multiple gate-ready molecules
Part of epic bd-ka761 (Gate-based async molecule resume).
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
bd list --tree:
- Use actual parent-child dependencies instead of dotted ID hierarchy
- Treat epic dependencies as parent-child relationships
- Sort children by priority (P0 first)
- Fix tree display in daemon mode with read-only store access
bd graph:
- Add --all flag to show dependency graph of all open issues
- Add --compact flag for tree-style rendering (reduces 44+ lines to 13)
- Fix "needs:N" cognitive noise by using semantic colors
- Add blocks:N indicator with semantic red coloring
bd show:
- Tufte-aligned header with status icon, priority, and type badges
- Add glamour markdown rendering with auto light/dark mode detection
- Cap markdown line width at 100 chars for readability
- Mute entire row for closed dependencies (work done, no attention needed)
Design system:
- Add shared status icons (○ ◐ ● ✓ ❄) with semantic colors
- Implement priority colors: P0 red, P1 orange, P2 muted gold, P3-P4 neutral
- Add TrueColor profile for distinct hex color rendering
- Type badges for epic (purple) and bug (red)
Design principles:
- Semantic colors only for actionable items
- Closed items fade (muted gray)
- Icons > text labels for better scanability
Co-Authored-By: SageOx <ox@sageox.ai>
- resolve_conflicts.go: Mark unused `num` parameter with `_`
- .golangci.yml: Add resolve_conflicts.go to G306 exclusion (JSONL files use 0644)
- .golangci.yml: Add doctor/git.go to G304 exclusion (safe path construction)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Problem:
- When dbPath is set to relative fallback (".beads/beads.db"),
findJSONLPath() returns a relative path
- daemon_sync_branch.go calls filepath.Rel(absolutePath, relativePath)
which fails with: "Rel: can't make .beads/issues.jsonl relative to ..."
Solution:
- Canonicalize dbPath at assignment in main.go:471 (source fix)
- Add defensive guard in findJSONLPath() (defense-in-depth)
- Use utils.CanonicalizePath() for OS-agnostic handling
(symlinks, case normalization on macOS)
Testing:
- Add TestFindJSONLPath_RelativeDbPath (tracer bullet for bug)
- Add edge case tests for BEADS_JSONL and empty dbPath
- All sync mode tests pass including daemon E2E
Reviewed by beads/crew/wolf. Fixes daemon mode silently ignoring --due and --defer flags. Adds comprehensive tests including TestDualPathParity for regression prevention.
