When beads is redirected (e.g., in Gas Town crew clones), bd prime now
shows a notice about the redirect. This helps agents understand why
they share issues with other clones.
CLI mode shows:
> ⚠️ **Redirected**: Local .beads → /path/to/target/.beads
> You share issues with other clones using this redirect.
MCP mode shows:
**Note**: Beads redirected to /path/to/target/.beads (shared with other clones)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds a new command that shows the active .beads directory path,
including redirect information for debugging. Supports --json output.
Example:
bd where
→ /Users/stevey/gt/beads/mayor/rig/.beads
(via redirect from /Users/stevey/gt/beads/crew/emma/.beads)
prefix: bd
database: /Users/stevey/gt/beads/mayor/rig/.beads/beads.db
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Extended bd-tvus fix to all doctor check functions that access .beads/
directory. In Gas Town multi-clone setups, crew/polecat clones use
.beads/redirect files to point to the shared mayor/rig beads directory.
Doctor checks now use resolveBeadsDir() to follow these redirects:
- daemon.go: CheckDaemonStatus
- git.go: CheckSyncBranchConfig, FindOrphanedIssues, CheckOrphanedIssues
- installation.go: CheckMultipleDatabases, CheckPermissions
- integrity.go: CheckIDFormat, CheckDependencyCycles, CheckTombstones,
CheckDeletionsManifest, CheckRepoFingerprint
- jsonl_integrity.go: CheckJSONLIntegrity
- legacy.go: CheckFreshClone
- maintenance.go: CheckStaleClosedIssues, CheckExpiredTombstones,
CheckCompactionCandidates
- perf.go: RunPerformanceDiagnostics, CollectPlatformInfo
- validation.go: CheckMergeArtifacts, CheckOrphanedDependencies,
CheckDuplicateIssues, CheckTestPollution, CheckChildParentDependencies,
CheckGitConflicts
- version.go: CheckMetadataVersionTracking
Intentionally NOT changed (check local files):
- CheckInstallation: checks local .beads/ exists
- CheckUntrackedBeadsFiles: checks git tracking of local files
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The bug was that doctor's database checks used the local .beads/beads.db
file directly, while import followed the redirect to the actual database.
This caused confusing output showing 0 issues when the actual database
had hundreds. Fixed by using resolveBeadsDir() in all database checks.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Changed from "preserved for reference" to "suppresses resurrections"
which better reflects the actual purpose.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Document all 7 issue statuses:
- open, in_progress, blocked, deferred, closed, tombstone, pinned
The pinned status was previously undocumented but is used by Gas Town
for hook management and persistent work items.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add nolint:unparam for readOnly param in sqlite_open.go
- Handle cmd.Help() error in wisp.go
- Handle rows.Close() error in migration 028
- Handle targetStore.Close() error in create.go
- Update Nix vendorHash for current dependencies
Cherry-picked from PR #769
Implements the 'bd orphans' command to identify issues referenced in commits
but still open in the database, and refactors to eliminate code duplication.
- Creates cmd/bd/orphans.go with Cobra command structure
- Identifies orphaned issues (referenced in git commits but still open/in_progress)
- Supports multiple output formats (human, JSON, detailed)
- Auto-close with --fix flag
DRY refactoring:
- Extracted FindOrphanedIssues() to cmd/bd/doctor/git.go as shared core logic
- Moved OrphanIssue type to cmd/bd/doctor/types.go
- Refactored CheckOrphanedIssues() to use FindOrphanedIssues()
Cherry-picked from PR #767
Co-authored-by: Amp <amp@ampcode.com>
docs: fix README and PLUGIN.md documentation issues
- Clarify that bd ready shows issues ready to work on (#512)
- Update git hooks install command from deprecated script to bd hooks install (#513)
- Fix Claude Code plugin local install: use ./beads not ., clarify shell vs CC commands (#514)
Fixes#512, #513, #514
Update docs to reflect CLI command restructuring:
- migrate-tombstones → migrate tombstones
- bd quickstart is now hidden, point to docs/QUICKSTART.md
- Add CLI consolidation section to CHANGELOG.md
- Remove quickstart from command tables
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Move cleanup, compact, and reset commands under `bd admin` namespace.
Creates hidden aliases for backwards compatibility that show deprecation
notice when used.
- Create cmd/bd/admin.go with parent command
- Create cmd/bd/admin_aliases.go for hidden backwards-compat aliases
- Update cleanup.go, compact.go, reset.go to remove rootCmd.AddCommand
- Update all documentation to use `bd admin <cmd>` syntax
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add --check flag to doctor for specific check modes
- Add --check=pollution to run detailed pollution detection
- Add --clean flag to delete detected test issues
- Mark detect-pollution command as hidden (deprecated)
- Update fix messages to point to new doctor --check=pollution
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add --thanks flag to bd info command
- Make bd thanks a hidden command (deprecated but still works)
- Part of CLI consolidation effort (bd-9115)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Analysis found these commands are dead code:
- gt never calls `bd pin` - uses `bd update --status=pinned` instead
- Beads.Pin() wrapper exists but is never called
- bd hook functionality duplicated by gt mol status
- Code comment says "pinned field is cosmetic for bd hook visibility"
Removed:
- cmd/bd/pin.go
- cmd/bd/unpin.go
- cmd/bd/hook.go
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add TestSpawnMoleculeEphemeralFlag: verifies DB-based spawn
- Add TestSpawnMoleculeFromFormulaEphemeral: verifies formula-based spawn
- Both tests confirm Ephemeral flag is set correctly
- Tests also verify ephemeral issues excluded from ready work
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Delete mol_catalog.go (duplicate functionality)
- Update mol.go help text to point to bd formula list
- Update CLI_REFERENCE.md and MOLECULES.md docs
- Update deprecated template.go references
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds --prefix as a forgiving alias to --rig flag. Accepts:
- Exact prefix: bd-, gt-
- Prefix without hyphen: bd, gt
- Rig name: beads, gastown
All resolve to the correct rig via routes.jsonl lookup.
This matches agents' mental model of prefix-based routing.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Without codesigning, the binary gets 'Killed: 9' on macOS due to
Gatekeeper security. This adds xattr -cr and codesign -f -s - after
building and after each copy to install locations.
Adds --rig flag to bd create that allows creating issues in a different
rig without having to cd to that directory.
Example: bd create --rig beads --title='Bug report'
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When `bd dep add` fails to resolve the dependency ID locally, it now
checks routes.jsonl for a matching prefix and auto-converts to an
external reference format (external:<project>:<id>).
This allows simpler syntax like:
bd dep add gt-xyz bd-abc
Instead of the verbose:
bd dep add gt-xyz external:beads:bd-abc
New functions in routing package:
- ExtractProjectFromPath: Gets project name from route path
- ResolveToExternalRef: Converts foreign ID to external ref using routes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The verb 'wisp' fits the chemistry metaphor (pour, bond, burn, squash)
while 'ephemeral' is an adjective. The internal API field remains
'Ephemeral' but the CLI command is now 'bd mol wisp'.
Commands:
bd mol wisp <proto> - create ephemeral wisp
bd mol wisp list - list wisps
bd mol wisp gc - garbage collect old wisps
For consistency, all molecule operations are now under bd mol:
- bd mol pour <proto> - create persistent mol
- bd mol ephemeral <proto> - create ephemeral mol
- bd mol ephemeral list - list ephemeral issues
- bd mol ephemeral gc - garbage collect old ephemeral issues
This aligns with existing mol subcommands: bond, squash, burn, etc.
