- Add TestSpawnMoleculeEphemeralFlag: verifies DB-based spawn
- Add TestSpawnMoleculeFromFormulaEphemeral: verifies formula-based spawn
- Both tests confirm Ephemeral flag is set correctly
- Tests also verify ephemeral issues excluded from ready work
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Delete mol_catalog.go (duplicate functionality)
- Update mol.go help text to point to bd formula list
- Update CLI_REFERENCE.md and MOLECULES.md docs
- Update deprecated template.go references
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds --prefix as a forgiving alias to --rig flag. Accepts:
- Exact prefix: bd-, gt-
- Prefix without hyphen: bd, gt
- Rig name: beads, gastown
All resolve to the correct rig via routes.jsonl lookup.
This matches agents' mental model of prefix-based routing.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Without codesigning, the binary gets 'Killed: 9' on macOS due to
Gatekeeper security. This adds xattr -cr and codesign -f -s - after
building and after each copy to install locations.
Adds --rig flag to bd create that allows creating issues in a different
rig without having to cd to that directory.
Example: bd create --rig beads --title='Bug report'
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When `bd dep add` fails to resolve the dependency ID locally, it now
checks routes.jsonl for a matching prefix and auto-converts to an
external reference format (external:<project>:<id>).
This allows simpler syntax like:
bd dep add gt-xyz bd-abc
Instead of the verbose:
bd dep add gt-xyz external:beads:bd-abc
New functions in routing package:
- ExtractProjectFromPath: Gets project name from route path
- ResolveToExternalRef: Converts foreign ID to external ref using routes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The verb 'wisp' fits the chemistry metaphor (pour, bond, burn, squash)
while 'ephemeral' is an adjective. The internal API field remains
'Ephemeral' but the CLI command is now 'bd mol wisp'.
Commands:
bd mol wisp <proto> - create ephemeral wisp
bd mol wisp list - list wisps
bd mol wisp gc - garbage collect old wisps
For consistency, all molecule operations are now under bd mol:
- bd mol pour <proto> - create persistent mol
- bd mol ephemeral <proto> - create ephemeral mol
- bd mol ephemeral list - list ephemeral issues
- bd mol ephemeral gc - garbage collect old ephemeral issues
This aligns with existing mol subcommands: bond, squash, burn, etc.
The migration was using SELECT * which fails when migrating databases
that predate the created_by column (34 columns vs 35). Now explicitly
lists columns and provides empty default for created_by if missing.
Also fixes missed Wisp→Ephemeral rename in multirepo_test.go.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The `bd comment --no-db` command was failing because
initializeNoDbMode() set the global `store` but never set
`storeActive = true`. When comments.go called ensureStoreActive(),
the guard check failed and it tried to find a SQLite database,
returning an ironic error telling the user to use --no-db.
Why only `comment` was affected:
- Commands like `create`, `update`, `close` use `store` directly
- The `comment` command calls `ensureStoreActive()` first as a safety check
- That function guards on `storeActive && store != nil`
- Since `storeActive` was never set, the guard failed and it looked for SQLite
The fix aligns no-db mode with what ensureStoreActive() expects.
Migration 028 lacked an idempotency check, causing it to fail on databases
where the migration had already been applied. The migration would attempt
to copy data from issues to issues_new, but both tables had the same CHECK
constraint, causing the insert to fail.
Added check for "status = 'tombstone'" in the table schema to detect if
the migration has already been applied and skip if so.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Wisps are ephemeral issues used for patrol/operational cycles and should
not appear in `bd ready` output as trackable work items. Added ephemeral
exclusion filter to both the GetReadyWork() function and ready_issues VIEW.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Migration 028 (tombstone_closed_at) recreates the issues table but was
missing the created_by column that exists in schema.go. This caused
`SELECT * FROM issues` to fail with column count mismatch on fresh DBs.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The --resolution flag was accidentally removed by a bd sync commit.
This restores the hidden alias for --reason, following Jira CLI convention.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Writes activity.json to ~/gt/daemon/ when bd runs inside a Gas Town
workspace. This enables the daemon to detect bd usage and adjust its
polling frequency with exponential backoff.
Best-effort: silently skips if not in Gas Town or on any error.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
created_by was recently added in c3ef1c3f38 but was missing support for passing in the CreatedBy through the RPC path so a create that was using the daemon was never having the created_by field set.
Adds chaos and E2E test running to the release process:
- New --run-chaos-tests flag runs chaos/corruption recovery tests
- Runs both chaos and e2e tagged tests before commit/tag
- Updated quick start to recommend chaos tests for releases
- Tests use 10m timeout for thorough coverage
Part of PR #752 integration.
Modern git (2.28+) uses 'main' as default branch, not 'master'.
Tests were failing because they assumed 'master' branch exists.
Changes:
- Use 'git init --initial-branch=main' instead of bare 'git init'
- Change 'git checkout master' to 'git checkout main'
- Add git.ResetCaches() after os.Chdir() to clear cached git state
- Ensures test isolation when changing directories
Adds automatic database recovery when bd doctor --fix detects corruption:
- Detects SQLite corruption (malformed database, SQLITE_CORRUPT errors)
- Backs up corrupted database before recovery attempt
- Rebuilds from JSONL if available (issues.jsonl, deletions.jsonl)
- Falls back to fresh database if JSONL unavailable
- Reports recovery results (issues imported, success/failure)
Recovery is triggered automatically by --fix when corruption is detected.
No manual intervention required.
