Root cause: Import and export commands tried to open the database directly
while the daemon already held the lock, causing indefinite blocking.
Solution: Both commands now explicitly close the daemon connection before
opening direct database access, avoiding SQLite lock contention.
Changes:
- import.go: Close daemon connection and open direct SQLite connection
- export.go: Close daemon connection before direct access
- Added debug logging to help diagnose similar issues
Tests: Existing TestImport and TestExport tests pass
Oracle identified a critical race condition in the initial fix:
- Pre-push hook checked for changes but didn't flush first
- Pending 5s-debounced flushes could land after the check
- Result: stale JSONL could still be pushed
Improvements:
1. Pre-push now flushes pending changes FIRST (bd sync --flush-only)
2. Uses git status --porcelain to catch ALL change types:
- Staged, unstaged, untracked, deleted, renamed, conflicts
3. Handles both beads.jsonl and issues.jsonl (backward compat)
4. Works even without bd installed (git-only check)
5. Pre-commit stages both JSONL files (simpler loop)
This completely eliminates the race condition.
The original pre-push hook tried to export DB → JSONL during the push,
then run 'git add', but this doesn't work because:
1. The commit is already created when pre-push runs
2. git add in pre-push stages files for a FUTURE commit
3. The current push sends the old commit with stale JSONL
4. Result: dirty git status after push
Fix:
- Pre-push now CHECKS for uncommitted JSONL changes
- If found, it FAILS the push with clear instructions
- User must commit JSONL before pushing
- This prevents stale JSONL from reaching remote
The pre-commit hook already properly flushes changes, so this
catch-all prevents changes made BETWEEN commit and push.
Amp-Thread-ID: https://ampcode.com/threads/T-39a89553-c301-4d4f-b39f-6df9c403d22b
Co-authored-by: Amp <amp@ampcode.com>
- Changed all test commands to 'go test -short ./...'
- Clarified that full tests run in CI
- Updated: Code Standards, Before Committing, Landing the Plane, Building and Testing, Release Process
- Agents should only run short tests; CI runs full suite
- Add 3-way merge deletion tracking using snapshot files
- Create .beads/beads.base.jsonl and .beads/beads.left.jsonl snapshots
- Integrate into both sync.go and daemon_sync.go
- Add comprehensive test suite in deletion_tracking_test.go
- Update .gitignore to exclude snapshot files
This fixes the resurrection bug where deleted issues come back after
multi-workspace git sync. Uses the beads-merge 3-way merge logic to
detect and apply deletions correctly.
- Add Short() guards to slow CLI tests (2-4s each)
- Add Short() guards to slow API/integration tests (3-11s)
- Add Short() guard to hanging daemon discovery test (29s timeout)
- Short test suite now runs in ~6s (down from 5+ minutes)
Run 'go test -short ./...' for fast iteration
Run 'go test ./...' for full coverage
Closes: bd-iov0
- Test auto-install in quiet mode (bd init --quiet)
- Test --skip-merge-driver flag
- Test detection of already-installed merge driver (no duplication)
- Test append to existing .gitattributes (preserve content)
- Test non-git repo gracefully skips merge driver
- Test git config has correct merge.beads.driver settings
Fixes: bd-csvy
Amp-Thread-ID: https://ampcode.com/threads/T-b237be26-6dd8-4d4e-9b9d-b460ace8ce72
Co-authored-by: Amp <amp@ampcode.com>
- Added merge_test.go with 797 lines of test coverage
- Tests for field merging, dependency merging, timestamp handling
- Tests for deletion detection and conflict generation
- Integration tests for merge driver auto-config in bd init
- Test helpers for git repository setup
Closes bd-kazt
All tests pass: go test ./internal/merge/... -v
Amp-Thread-ID: https://ampcode.com/threads/T-f0fe7c4c-13e7-486b-b073-fc64b81eeb4b
Co-authored-by: Amp <amp@ampcode.com>
- Check error returns from Fprintln and Sync
- Remove unused 'merged' parameter from hasConflict
- Remaining gosec G304 warnings are baseline (file paths from git, not user input)
- Vendored beads-merge algorithm into internal/merge/ with full MIT license attribution
- Created bd merge command as native wrapper (no external binary needed)
- Updated bd init to auto-configure git merge driver (both interactive and --quiet)
- Removed obsolete test files that were incompatible with vendored version
- Added merge to noDbCommands list so it can run standalone
- Tested: successful merge and conflict detection work correctly
Closes bd-bzfy
Thanks to @neongreen for permission to vendor!
See: https://github.com/neongreen/mono/issues/240
Original: https://github.com/neongreen/mono/tree/main/beads-merge
Amp-Thread-ID: https://ampcode.com/threads/T-f0fe7c4c-13e7-486b-b073-fc64b81eeb4b
Co-authored-by: Amp <amp@ampcode.com>
Created root-level beads.go that re-exports types and functions from
internal packages. This allows external projects (like VC) to import
from github.com/steveyegge/beads without violating Go's internal
package restrictions.
Exports:
- Storage interface and NewSQLiteStorage()
- Core types (Issue, Dependency, Label, etc.)
- Filter types (IssueFilter, WorkFilter)
- All relevant constants (Status, IssueType, DependencyType, etc.)
This matches the usage shown in docs/EXTENDING.md.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Fixes GH-234 by providing automatic resolution for duplicate external_ref
values instead of forcing manual JSONL editing.
Changes:
- Add ClearDuplicateExternalRefs option to importer.Options
- Modify validateNoDuplicateExternalRefs to clear duplicates when enabled
- Keep first occurrence, clear rest when flag is set
- Enhanced error message to suggest the flag
- Add comprehensive tests for the new behavior
Usage: bd import -i issues.jsonl --clear-duplicate-external-refs
Amp-Thread-ID: https://ampcode.com/threads/T-932dcf45-76f2-4994-9b5c-a6eb20a86036
Co-authored-by: Amp <amp@ampcode.com>
* Add script to automate Nix vendorHash updates
- Create update-nix-hash.sh to automate vendorHash calculation
- Update vendorHash (to be usedafter recent Go dependency changes)
- Script uses ed for OS agnostic in-place editing and extracts hash from nix output
Co-Authored-By: Claude <noreply@anthropic.com>
* Fix Test Nix Flake CI job
* Revert CI change - bd outputs help by default without 'help' arg
---------
Co-authored-by: Claude <noreply@anthropic.com>
Co-authored-by: Steve Yegge <stevey@sourcegraph.com>
Fixes#238 - The workflow was using a shell command
instead of extracting the linux checksums like it does for macOS.
Now extracts all platform hashes and uses them in the formula.
