Bug: updateDependencyReferences() was incorrectly updating ALL dependencies
in the database during collision resolution with --resolve-collisions,
including dependencies belonging to existing issues.
Root cause: The function checked if dep.IssueID was in idMapping keys
(old imported IDs like 'bd-1'), but those are also the IDs of existing
database issues. This caused existing dependencies to be incorrectly
modified or deleted.
Fix: Changed logic to only update dependencies where IssueID is in
idMapping VALUES (new remapped IDs like 'bd-295'). This ensures only
dependencies from remapped issues are updated, not existing ones.
During normal import flow, this is effectively a no-op since imported
dependencies haven't been added to the database yet when RemapCollisions
runs (they're added later in Phase 5 of import_shared.go).
Changes:
- Updated updateDependencyReferences() in collision.go to build a set
of new remapped IDs and only update dependencies with those IDs
- Added comprehensive documentation explaining the correct semantics
- Added regression tests: TestRemapCollisionsRemapsImportedNotExisting
and TestRemapCollisionsDoesNotUpdateNonexistentDependencies
- Skipped 3 tests that expected the old buggy behavior with clear
notes about why they need to be rewritten
Real-world impact: In one case, 125 dependencies were incorrectly
deleted from 157 existing issues during collision resolution.
Fixes https://github.com/steveyegge/beads/issues/120
Fixes bd-56
- Change validateBatchIssues() to only set timestamps if IsZero()
- Preserves historical timestamps from external systems (Jira, GitHub)
- Fixes dirty git repo after importing unchanged JSONL
- New issues still get current timestamps as before
- Add daemon.lock to .gitignore
Closes bd-55
Fixes#121
Amp-Thread-ID: https://ampcode.com/threads/T-e53c4a96-38dd-440a-9b8d-824992d33a40
Co-authored-by: Amp <amp@ampcode.com>
* Update skill installation path and document new features
Installation path changes:
- Update from ~/.claude/skills/bd to bd-issue-tracking
- Matches internal skill name for consistency with other skills
Documentation additions:
- Add 3 new reference files to documentation list
- Document compaction survival patterns (critical for Claude Code)
- Mention self-check checklists and quality guidelines
This prepares the README for upcoming skill content improvements.
* Add new reference files for enhanced skill guidance
New reference documentation:
1. ISSUE_CREATION.md - When to ask vs create issues
- Decision criteria for knowledge work vs technical work
- Issue quality guidelines and best practices
- Design vs acceptance criteria guidance
- Self-check questions for well-scoped issues
2. RESUMABILITY.md - Making issues resumable across sessions
- Patterns for complex technical work with APIs
- Working code examples and API response samples
- When enhanced documentation matters vs simple descriptions
- Critical for multi-session work and crash recovery
3. STATIC_DATA.md - Using bd for reference databases
- Alternative use case beyond work tracking
- Glossaries and terminology management
- Dual format patterns (database + markdown)
- When bd helps vs when simpler formats suffice
These additions emerged from real-world usage patterns and enable
Claude to make better decisions about issue structure and resumability.
* Enhance existing skill files with real-world usage patterns
SKILL.md major enhancements (~194 net lines added):
- Add "Test Yourself" decision framework with self-check questions
- Document compaction survival patterns (critical for Claude Code)
- Add Notes Quality Self-Check (future-me test, stranger test)
- Session Start Checklist with copy-paste templates
- Field Usage Reference table (when to use each bd field)
- Progress Checkpointing triggers and patterns
- Issue Creation Checklist with quality self-checks
- Enhanced session handoff protocols
WORKFLOWS.md enhancements (~114 lines added):
- Session handoff workflow with detailed checklists
- Collaborative handoff between Claude and user
- Compaction survival workflow
- Notes format guidelines (current state, not cumulative)
- Session start checklist expansion
BOUNDARIES.md updates (~49 lines removed):
- Streamlined content (moved detailed workflows to WORKFLOWS.md)
- Retained core decision criteria
- Improved examples and integration patterns
CLI_REFERENCE.md minor updates:
- Additional command examples
- Clarified flag usage
These improvements emerged from extensive real-world usage, particularly
around crash recovery, compaction events, and multi-session workflows.
The additions make the skill more practical for autonomous agent use.
- Implement robust worktree detection using git-dir vs git-common-dir comparison
- Add prominent warning when daemon mode is active in a worktree
- Warn in 3 places: initial connection, auto-start, and daemon start command
- Show shared database path and clarify BEADS_AUTO_START_DAEMON behavior
- Document limitations and solutions in README.md and AGENTS.md
- Add comprehensive tests for detection and path truncation
Fixes#55
Amp-Thread-ID: https://ampcode.com/threads/T-254eb9e3-1a42-42d7-afdf-b7ca2d2dcb8b
Co-authored-by: Amp <amp@ampcode.com>
Fixes missing ./default.nix path in flake.nix and adds smoke test to prevent future regressions.
Co-authored-by: zgagnon <zgagnon@users.noreply.github.com>
- Added comprehensive documentation with 5 safety rules and best practices
- Added atomic.Bool closed field for lifecycle tracking
- Added IsClosed() method to check storage state
- All existing tests pass with -race flag
Amp-Thread-ID: https://ampcode.com/threads/T-e10b5206-4acd-4b9c-915d-423f958e350b
Co-authored-by: Amp <amp@ampcode.com>
- Add recommended UnderlyingDB() usage pattern with examples
- Document safety warnings (never close, no pool changes, keep txns short)
- Add when to use UnderlyingDB() vs sql.Open() guidance
- Update VC example to show embedding pattern with UnderlyingDB()
- Cross-reference bd-64 safety requirements
Closes bd-65
Amp-Thread-ID: https://ampcode.com/threads/T-c2c18266-ccf2-4615-a2f1-be134e8f1c0d
Co-authored-by: Amp <amp@ampcode.com>
In PR #105, a regression was introduced into the nix flake
which disabled consumers from access the package.
This pr fixes that regression.
Additionally adds a nix smoke test for a backstop against this in the future
- Add daemon kill step before build/test
- Add local Go install update step
- Add TMPDIR=/tmp to all go commands
- Update Homebrew install instructions with --build-from-source
- Add git config setup for homebrew-beads repo
Renamed BdDaemonClient.close() cleanup method to cleanup() to eliminate
method name collision with async close(params) method for closing issues.
Root cause: Python method resolution meant the non-async close(self)
cleanup method was shadowing the async close(self, params) method that
closes issues, causing 'takes 1 positional argument but 2 were given'.
Changes:
- bd_daemon_client.py: Renamed close() -> cleanup()
- server.py: Updated cleanup code to call cleanup() instead of close()
- test_lifecycle.py: Updated tests to use cleanup()
All close-related tests pass. Fixes GitHub issue #107.
Tracked in bd-67 (closed).
Implements database platform layer for extensions like VC to create
their own tables in the same SQLite database.
Changes:
- Add UnderlyingDB() *sql.DB to Storage interface
- Implement in SQLiteStorage to expose underlying connection
- Add comprehensive test suite (5 tests, -race clean)
- Tests cover: basic access, extension tables, concurrency,
lifecycle safety, and transaction behavior
This allows VC to host its executor_instances and other tables
alongside beads core tables with proper FK enforcement.
Related issues: bd-57, bd-64, bd-65, bd-66
Amp-Thread-ID: https://ampcode.com/threads/T-a6715beb-fe92-4dee-b931-3c9327124875
Co-authored-by: Amp <amp@ampcode.com>
The sync command was crashing at sync.go:245 with a nil pointer
dereference when running in direct mode (without daemon). The
exportToJSONL function attempted to use store.SearchIssues()
without first ensuring the store was initialized.
This fix adds a call to ensureStoreActive() before accessing
the store, matching the pattern used by other commands like
export. This ensures the store is properly initialized whether
running with or without the daemon.
Fixes#106🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-authored-by: Claude <noreply@anthropic.com>
Expose full Storage interface and all types through public beads.go API,
enabling external Go projects (like VC) to import Beads directly instead
of spawning CLI processes.
Changes:
- Expanded beads.go with all public types (Issue, Dependency, Comment, etc.)
- Added all constants (Status, IssueType, DependencyType, EventType)
- Created comprehensive integration tests (beads_integration_test.go)
- Added library usage example at examples/library-usage/
- Documented library integration in README.md
Test coverage: 96.4% on public API, 14 integration tests, all passing.
Closes bd-58, bd-59
Amp-Thread-ID: https://ampcode.com/threads/T-f0093c79-7422-45e2-b0ed-0ddfebc9ffea
Co-authored-by: Amp <amp@ampcode.com>
- Implemented daemon.lock using flock (Unix) and LockFileEx (Windows)
- Lock acquired before PID file, held for daemon lifetime
- Eliminates race conditions in concurrent daemon starts
- Backward compatible: falls back to PID check for old daemons
- Updated isDaemonRunning() to check lock availability
- All tests pass including new lock and backward compatibility tests
Amp-Thread-ID: https://ampcode.com/threads/T-0e2627f4-03f9-4024-bb4b-21d23d296300
Co-authored-by: Amp <amp@ampcode.com>
- Added mergeResult struct to track operations (added vs skipped)
- Check if source issues already closed before attempting to close
- Track dependencies migrated vs already existed
- Count text references updated
- Display detailed breakdown of operations in output
- Updated help text to clarify idempotent behavior
- Added comprehensive tests for idempotent retry scenarios
* Fix autostart test to work in nix sandbox
* Break out a default.nix to make consuming this package easier
The flake is great for local development, but creates overhead and
duplication when pulling it in on another machine. With the default.nix,
the flake continues to work as before, but consumers can callPackage directly
with their own nixpkgs.
* Break out a default.nix to make consuming this package easier
The flake is great for local development, but creates overhead and
duplication when pulling it in on another machine. With the default.nix,
the flake continues to work as before, but consumers can callPackage directly
with their own nixpkgs.
The createClosedIssue helper was setting ClosedAt to time.Now(), but the
eligibility check uses '<= datetime(now, -0 days)'. This created a race
condition where if nanoseconds elapsed between issue creation and the
query, the issue would fail eligibility checks.
Changed to now.Add(-1*time.Second) to ensure issues are always eligible
when compact_tier1_days is set to 0 for testing.
Fixes bd-18
Amp-Thread-ID: https://ampcode.com/threads/T-bc303dd9-f0e7-4d52-8908-e433d429ac4a
Co-authored-by: Amp <amp@ampcode.com>
