* fix: address critical resource leaks and error handling issues
Fixes 5 critical and high-priority issues identified in codebase analysis:
1. bd-vavh: Fix row iterator resource leak in recursive dependency queries
- Move defer rows.Close() to execute on all code paths
- Previously leaked connections on scan errors
- Location: internal/storage/sqlite/sqlite.go:1121-1145
2. bd-qhws: Configure database connection pool limits for daemon mode
- Set MaxOpenConns to runtime.NumCPU() + 1 for file-based databases
- Prevents connection exhaustion under concurrent RPC load
- Only affects daemon mode (long-running server)
- Location: internal/storage/sqlite/sqlite.go:108-125
3. bd-jo38: Add WaitGroup tracking to FileWatcher goroutines
- Track goroutines with sync.WaitGroup for graceful shutdown
- Wait for goroutines to finish before cleanup in Close()
- Prevents race condition on debouncer access during shutdown
- Location: cmd/bd/daemon_watcher.go (Start, startPolling, Close)
4. bd-2d5r: Fix silent error handling in RPC response writing
- writeResponse now returns errors instead of ignoring them
- Prevents sending partial JSON and client hangs
- Closes connection on marshal/write errors
- Location: internal/rpc/server_lifecycle_conn.go:227-246
5. bd-zqmb: Fix goroutine leak in daemon restart
- Add 10-second timeout to daemon Wait() goroutine
- Kill process if it doesn't fork within timeout
- Prevents goroutine accumulation on restart failures
- Location: cmd/bd/daemons.go:250-268
All changes follow Go best practices and maintain backward compatibility.
* Add feature request for .beads/README.md generation during init
Created bd-m7ge to automatically generate a promotional/documentation
README in the .beads directory when running 'bd init'. This will help
advertise Beads in open source repositories and provide quick reference
documentation for developers using AI coding agents.
The README will include:
- Brief explanation of Beads (AI-native issue tracking)
- Link to steveyegge/beads repository
- Quick reference of essential commands
- Compelling messaging to encourage adoption
The ID disambiguation logic treated 'offlinebrew-3d0' as ambiguous when
child IDs like 'offlinebrew-3d0.1' existed. Now the system:
1. Checks for exact full ID matches first (issue.ID == input)
2. Checks for exact hash matches (handling cross-prefix scenarios)
3. Only falls back to substring matching if no exact match is found
Added test cases verifying:
- 'offlinebrew-3d0' matches exactly, not ambiguously with children
- '3d0' without prefix still resolves to exact match
Amp-Thread-ID: https://ampcode.com/threads/T-5358ea57-e9ea-49e9-aedf-7044ebf8b52a
Co-authored-by: Amp <amp@ampcode.com>
When using 'bd create --parent <id>', the system now automatically
creates a parent-child dependency linking the child to the parent.
This fixes epic status reporting which was showing zero children.
Fixes#318 (bd-jijf)
Changes:
- cmd/bd/create.go: Add parent-child dependency after issue creation
- internal/rpc/server_issues_epics.go: Add same fix for daemon mode
Tested:
- Created epic with children, verified epic status shows correct count
- Verified closing all children makes epic eligible for closure
- All tests pass
Amp-Thread-ID: https://ampcode.com/threads/T-f1a1aee1-03bd-4e62-a63c-c1d339f8300b
Co-authored-by: Amp <amp@ampcode.com>
* feat: add performance testing framework foundation
Implements foundation for comprehensive performance testing and user
diagnostics for beads databases at 10K-20K scale.
Components added:
- Fixture generator (internal/testutil/fixtures/) for realistic test data
* LargeSQLite/XLargeSQLite: 10K/20K issues with epic hierarchies
* LargeFromJSONL/XLargeFromJSONL: test JSONL import path
* Realistic cross-linked dependencies, labels, assignees
* Reproducible with seeded RNG
- User diagnostics (bd doctor --perf) for field performance data
* Collects platform info (OS, arch, Go/SQLite versions)
* Measures key operation timings (ready, list, show, search)
* Generates CPU profiles for bug reports
* Clean separation in cmd/bd/doctor/perf.go
Test data characteristics:
- 10% epics, 30% features, 60% tasks
- 4-level hierarchies (Epic → Feature → Task → Subtask)
- 20% cross-epic blocking dependencies
- Realistic status/priority/label distributions
Supports bd-l954 (Performance Testing Framework epic)
Closes bd-6ed8, bd-q59i
* perf: optimize GetReadyWork with compound index (20x speedup)
Add compound index on dependencies(depends_on_id, type, issue_id) to
eliminate performance bottleneck in GetReadyWork recursive CTE query.
Performance improvements (10K issue database):
- GetReadyWork: 752ms → 36.6ms (20.5x faster)
- Target: <50ms ✓ ACHIEVED
- 20K database: ~1500ms → 79.4ms (19x faster)
Benchmark infrastructure enhancements:
- Add dataset caching in /tmp/beads-bench-cache/ to avoid regenerating
10K-20K issues on every benchmark run (first run: ~2min, subsequent: <5s)
- Add progress logging during fixture generation (shows 10%, 20%... completion)
- Add database size logging (17.5 MB for 10K, 35.1 MB for 20K)
- Document rationale for only benchmarking large datasets (>10K issues)
- Add CPU/trace profiling with --profile flag for performance debugging
Schema changes:
- internal/storage/sqlite/schema.go: Add idx_dependencies_depends_on_type_issue
New files:
- internal/storage/sqlite/bench_helpers_test.go: Reusable benchmark setup with caching
- internal/storage/sqlite/sqlite_bench_test.go: Comprehensive benchmarks for critical operations
- Makefile: Convenient benchmark execution (make bench-quick, make bench)
Related:
- Resolves bd-5qim (optimize GetReadyWork performance)
- Builds on bd-6ed8 (fixture generator), bd-q59i (bd doctor --perf)
* perf: add WASM compilation cache to eliminate cold-start overhead
Configure wazero compilation cache for ncruces/go-sqlite3 to avoid
~220ms JIT compilation on every process start.
Cache configuration:
- Location: ~/.cache/beads/wasm/ (platform-specific via os.UserCacheDir)
- Automatic version management: wazero keys entries by its version
- Fallback: in-memory cache if directory creation fails
- No cleanup needed: old versions are harmless (~5-10MB each)
Performance impact:
- First run: ~220ms (populate cache)
- Subsequent runs: ~20ms (load from cache)
- Savings: ~200ms per cold start
Cache invalidation:
- Automatic when wazero version changes (upgrades use new cache dir)
- Manual cleanup: rm -rf ~/.cache/beads/wasm/ (safe to delete anytime)
This complements daemon mode:
- Daemon mode: eliminates startup cost by keeping process alive
- WASM cache: reduces startup cost for one-off commands or daemon restarts
Changes:
- internal/storage/sqlite/sqlite.go: Add init() with cache setup
* refactor: improve maintainability of performance testing code
Extract common patterns and eliminate duplication across benchmarks, fixture generation, and performance diagnostics. Replace magic numbers with explicit configuration to improve readability and make it easier to tune test parameters.
* docs: clarify profiling behavior and add missing documentation
Add explanatory comments for profiling setup to clarify why --profile
forces direct mode (captures actual database operations instead of RPC
overhead) and document the stopCPUProfile function's role in flushing
profile data to disk. Also fix gosec G104 linter warning by explicitly
ignoring Close() error during cleanup.
* fix: prevent bench-quick from running indefinitely
Added //go:build bench tags and skipped timeout-prone benchmarks to
prevent make bench-quick from running for hours.
Changes:
- Add //go:build bench tag to cycle_bench_test.go and compact_bench_test.go
- Skip Dense graph benchmarks (documented to timeout >120s)
- Fix compact benchmark prefix: bd- → bd (validation expects prefix without trailing dash)
Before: make bench-quick ran for 3.5+ hours (12,699s) before manual interrupt
After: make bench-quick completes in ~25 seconds
The Dense graph benchmarks are known to timeout and represent rare edge
cases that don't need optimization for typical workflows.
- Force single connection for all in-memory databases (including file::memory:)
- Close rows before executing statements in external_ref migration
- Prevents connection pool deadlock with MaxOpenConns(1)
- Fixes test failures in syncbranch_test.go
The formatDependencyType function was removed in commit 57b6ea6 when
the dependency display UI was simplified. The test was left behind
and is now failing CI.
This completes the cleanup that was partially done in PR #309.
Add external_ref field to CreateArgs and UpdateArgs RPC protocol
structs to enable linking issues to external systems (GitHub, Jira,
Shortcut, etc.) when using daemon mode.
Changes:
- Add ExternalRef field to rpc.CreateArgs and rpc.UpdateArgs
- Update bd create/update commands to pass external_ref via RPC
- Update daemon handlers to process external_ref field
- Add integration tests for create and update operations
The --external-ref flag now works correctly in both daemon and direct modes.
Fixes https://github.com/steveyegge/beads/issues/303
Generated with [Claude Code](https://claude.com/claude-code)
via [Happy](https://happy.engineering)
Co-authored-by: Claude <noreply@anthropic.com>
Co-authored-by: Happy <yesreply@happy.engineering>
When bd import finds no changes (0 created, 0 updated), it now updates
the database modification timestamp to signal sync validation passed.
This fixes 'bd sync' refusing to export with 'JSONL is newer than database'
error that occurs after git pull updates JSONL mtime without content changes.
Root cause: Import validated DB/JSONL are in sync but didn't update DB mtime,
causing timestamp-based sync validation to perpetually fail.
Amp-Thread-ID: https://ampcode.com/threads/T-560b9c11-e368-45e6-b1e3-512b6d6010a1
Co-authored-by: Amp <amp@ampcode.com>
The schema initialization was trying to create an index on the external_ref
column before the migration that adds the column runs. This caused 'no such
column: external_ref' errors when opening very old databases (pre-0.17.5).
Solution: Move the index creation into the migration that adds the column.
Fixes#284
Amp-Thread-ID: https://ampcode.com/threads/T-2744d5a7-168f-4ef6-bcab-926db846de20
Co-authored-by: Amp <amp@ampcode.com>
Misleading '0 created, 0 updated' message when actually importing
all issues on fresh database. Discovered during VC database sync.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Add hasGitRemote() helper to detect if any remote exists
- Gracefully skip git pull/push when no remote configured
- Daemon now works in local-only mode (RPC, auto-flush, JSONL export)
- Add comprehensive test coverage for local-only workflows
- Fixes GH#279: daemon crash on repos without origin remote
Amp-Thread-ID: https://ampcode.com/threads/T-5dad0ca8-ac77-4ae0-8de6-208b23ea47af
Co-authored-by: Amp <amp@ampcode.com>
The .envrc file is auto-generated by Agent Mail and contains
machine-specific environment variables (workspace paths, agent names).
It should not be committed to the repository.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
The post-checkout hook was missing the bd-hooks-version marker that the other
hooks have, and it wasn't being checked by CheckGitHooks(). This caused
version mismatch issues during hook status checks.
Changes:
- Added 'bd-hooks-version: 0.23.1' marker to post-checkout hook
- Updated CheckGitHooks() to include post-checkout in the list of hooks to check
This ensures all four git hooks (pre-commit, post-merge, pre-push, post-checkout)
have consistent version tracking.
Fixes bd-kb4g
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Changed ExtractIssuePrefix to use strings.Index (first hyphen)
- IDs like 'vc-baseline-test' now correctly use prefix 'vc'
- Fixes false prefix mismatch errors for hyphenated suffixes
- Added comprehensive tests for multi-part ID handling
- Check existing JSONL issues before falling back to directory name on initialization
- Implement readFirstIssueFromJSONL() to extract prefix from first issue
- Added tests for readFirstIssueFromJSONL
