Steve Yegge 8ef3d81108 fix(sync): prevent final flush after sync.branch restore ...

When sync.branch is configured, the sync command:
1. Exports changes to JSONL
2. Commits to sync branch via worktree
3. Pulls from sync branch
4. Restores .beads/ from HEAD to keep working directory clean

But PersistentPostRun's flushManager.Shutdown() was re-exporting to JSONL,
undoing the restore and leaving modified files.

Fix: Set skipFinalFlush flag when sync.branch mode completes successfully.
This prevents the final export in PersistentPostRun.

Also: Skip push to main branch when sync.branch is configured - all
pushes should go through the sync branch worktree.

2025-12-01 20:51:54 -08:00

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