Steve Yegge 466c606eb9 feat(mol): rename bond→spawn, add BondRef data model ...

Molecule evolution:
- Rename `bd mol bond` to `bd mol spawn` for instantiation
- Add BondRef type for tracking compound lineage
- Add `bonded_from` field to Issue for compound molecules
- Add BondType constants (sequential, parallel, conditional, root)
- Add IsCompound() and GetConstituents() helpers
- Add 'protomolecule' easter egg alias

Closes: bd-mh4w, bd-rnnr
Part of: bd-o5xe (Molecule bonding epic)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2025-12-21 01:20:25 -08:00

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audit

feat(audit): add append-only agent audit trail (.beads/interactions.jsonl)

2025-12-20 03:24:51 -08:00

autoimport

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beads

feat(status): add deferred status for icebox issues (bd-4jr)

2025-12-20 14:24:48 -08:00

compact

feat(audit): add append-only agent audit trail (.beads/interactions.jsonl)

2025-12-20 03:24:51 -08:00

config

feat(config): add directory-aware label scoping for monorepos (fixes #541)

2025-12-20 03:41:09 -08:00

configfile

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daemon

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debug

test(coverage): add tests to meet 45% CI threshold

2025-12-18 17:45:49 -05:00

export

test(coverage): add tests to meet 45% CI threshold

2025-12-18 17:45:49 -05:00

git

fix(worktree): add -f flag to handle missing but registered state (#609)

2025-12-18 20:29:32 -08:00

hooks

refactor: remove bd mail commands - mail moves to Gas Town

2025-12-20 17:56:46 -08:00

idgen

fix(idgen): correct test vectors in hash_test.go

2025-12-19 18:13:56 -08:00

importer

fix(pin): add 'pinned' field to allowed update fields (gt-zr0a)

2025-12-20 19:57:16 -08:00

linear

test(linear): add comprehensive tests for mapping and client functions

2025-12-19 18:30:03 -08:00

lockfile

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merge

test(merge): add test for both sides adding same dependency

2025-12-18 23:24:31 -08:00

molecules

feat(molecules): Add molecules.jsonl as separate catalog file for templates

2025-12-20 09:27:41 -08:00

routing

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rpc

feat(molecules): add bd molecule commands and template protection (beads-1ra)

2025-12-19 22:14:54 -08:00

storage

fix(pin): add 'pinned' field to allowed update fields (gt-zr0a)

2025-12-20 19:57:16 -08:00

syncbranch

DOCTOR IMPROVEMENTS: visual improvements/grouping + add comprehensive tests + fix gosec warnings (#656)

2025-12-20 03:10:06 -08:00

testutil

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types

feat(mol): rename bond→spawn, add BondRef data model

2025-12-21 01:20:25 -08:00

ui

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

util

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utils

fix(test): resolve target path in symlink test for macOS

2025-12-20 18:02:41 -08:00

validation

Add 'molecule' as valid issue type

2025-12-19 18:31:33 -08:00