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beads/cmd/bd
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Steve Yegge e0f1d43c2c fix: write startup config keys to config.yaml instead of SQLite (GH#536) 
`bd config set no-db true` now correctly writes to config.yaml instead of
SQLite. Previously, startup flags like no-db, no-daemon, no-auto-flush were
stored in SQLite but read from config.yaml at startup - making the command
appear to work while having no effect.

This adds:
- yaml_config.go: Defines yaml-only keys and provides SetYamlConfig/GetYamlConfig
- Updated config set/get commands to route yaml-only keys appropriately
- Comprehensive tests for yaml config handling

Startup flags affected: no-db, no-daemon, no-auto-flush, no-auto-import,
json, auto-start-daemon, flush-debounce, lock-timeout, git.*, sync.*, routing.*

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-23 17:03:39 -08:00
..
doctor
bd sync: 2025-12-23 13:49:07
2025-12-23 14:39:07 -08:00
setup
fix(setup): preserve symlinks in atomicWriteFile
2025-12-20 20:15:55 -05:00
templates/hooks
chore: bump version to v0.35.0
2025-12-23 04:58:19 -08:00
testdata
bd sync: 2025-12-23 13:49:07
2025-12-23 14:39:07 -08:00
.gitattributes
Fix tests (bd-6ss and sub-issues) (#626)
2025-12-18 18:23:30 -08:00
@AGENTS.md
Fix tests (bd-6ss and sub-issues) (#626)
2025-12-18 18:23:30 -08:00
activity_test.go
fix: emit rich mutation events for status changes (bd-313v)
2025-12-23 04:16:26 -08:00
activity.go
fix: emit rich mutation events for status changes (bd-313v)
2025-12-23 04:16:26 -08:00
AGENTS.md
Fix tests (bd-6ss and sub-issues) (#626)
2025-12-18 18:23:30 -08:00
audit.go
feat(audit): add append-only agent audit trail (.beads/interactions.jsonl)
2025-12-20 03:24:51 -08:00
autoflush.go
refactor: remove legacy autoflush code paths (bd-xsl9)
2025-12-23 01:56:19 -08:00
autoimport_test.go
refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)
2025-12-22 21:15:41 -08:00
autoimport.go
refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)
2025-12-22 21:15:41 -08:00
autostart_test.go
Fix tests (bd-6ss and sub-issues) (#626)
2025-12-18 18:23:30 -08:00
cleanup.go
feat: consolidate maintenance commands into bd doctor --fix (bd-bqcc)
2025-12-23 01:31:18 -08:00
cli_fast_test.go
refactor: remove legacy autoflush code paths (bd-xsl9)
2025-12-23 01:56:19 -08:00
comments_test.go
…
comments.go
fix: misc improvements and dependency updates
2025-12-20 17:09:50 -08:00
compact_test.go
feat: add --hard flag to bd cleanup for bypassing tombstone TTL safety
2025-12-16 01:25:57 -08:00
compact.go
Standardize error handling: use FatalError in compact.go, sync.go, migrate.go
2025-12-23 13:46:43 -08:00
config_test.go
…
config.go
fix: write startup config keys to config.yaml instead of SQLite (GH#536)
2025-12-23 17:03:39 -08:00
count.go
feat: add gate issue type and CLI commands for async coordination (bd-udsi)
2025-12-23 12:06:42 -08:00
create_form_test.go
cleanup
2025-12-16 17:26:06 -08:00
create_form.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
create_test.go
…
create.go
feat: add gate issue type and CLI commands for async coordination (bd-udsi)
2025-12-23 12:06:42 -08:00
daemon_autoimport_test.go
…
daemon_autostart.go
chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)
2025-12-22 21:30:57 -08:00
daemon_basics_test.go
Fix tests (bd-6ss and sub-issues) (#626)
2025-12-18 18:23:30 -08:00
daemon_config.go
…
daemon_crash_test.go
…
daemon_debouncer_test.go
…
daemon_debouncer.go
…
daemon_event_loop.go
feat(daemon): add auto_pull config parameter for periodic remote sync
2025-12-22 18:47:18 -05:00
daemon_health_freebsd.go
fix(unix): handle Statfs field types for disk space check (#646)
2025-12-19 17:50:14 -08:00
daemon_health_unix.go
fix(unix): handle Statfs field types for disk space check (#646)
2025-12-19 17:50:14 -08:00
daemon_health_wasm.go
…
daemon_health_windows.go
…
daemon_integration_test.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemon_lifecycle.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemon_local_test.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemon_lock_test.go
…
daemon_lock_unix.go
…
daemon_lock_wasm.go
…
daemon_lock_windows.go
…
daemon_lock.go
chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)
2025-12-22 21:30:57 -08:00
daemon_logger.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemon_parent_test.go
Fix integration test compilation errors in cmd/bd
2025-12-11 07:11:15 -05:00
daemon_rotation_test.go
…
daemon_server.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemon_sync_branch_test.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemon_sync_branch.go
fix(worktree): integrate health check into CreateBeadsWorktree to prevent redundant checks
2025-12-22 18:57:43 -05:00
daemon_sync_test.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemon_sync.go
refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)
2025-12-22 15:39:55 -08:00
daemon_test.go
Fix integration test compilation errors in cmd/bd
2025-12-11 07:11:15 -05:00
daemon_unix_test.go
…
daemon_unix.go
…
daemon_wasm.go
…
daemon_watcher_platform_test.go
…
daemon_watcher_test.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemon_watcher.go
fix(daemon): deduplicate file and git ref change log messages
2025-12-22 19:02:42 -05:00
daemon_windows.go
…
daemon.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
daemons_test.go
…
daemons.go
refactor(cmd): replace map[string]interface{} with typed JSON response structs (bd-u2sc.1)
2025-12-22 15:48:36 -08:00
defer.go
Merge upstream/main into subtle-ux-improvements
2025-12-20 17:22:43 -08:00
delete_test.go
…
delete.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
deletion_tracking_test.go
…
deletion_tracking.go
chore: remove dead deprecated wrapper functions
2025-12-21 15:50:10 -08:00
dep_test.go
Fix tests (bd-6ss and sub-issues) (#626)
2025-12-18 18:23:30 -08:00
dep.go
feat: display external deps in bd dep tree (bd-vks2, bd-mv6h, bd-d9mu)
2025-12-22 22:34:18 -08:00
detect_pollution.go
feat: consolidate maintenance commands into bd doctor --fix (bd-bqcc)
2025-12-23 01:31:18 -08:00
direct_mode_test.go
refactor: remove legacy autoflush code paths (bd-xsl9)
2025-12-23 01:56:19 -08:00
direct_mode.go
fix: improve JSONL-only mode detection and error messages (GH #534)
2025-12-13 12:50:33 -08:00
docs.md
docs: Add comprehensive documentation for version reporting changes
2025-12-13 10:04:01 +11:00
doctor_test.go
release: v0.34.0
2025-12-22 03:18:55 -08:00
doctor.go
bd sync: 2025-12-23 13:49:07
2025-12-23 14:39:07 -08:00
duplicate.go
chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)
2025-12-22 21:30:57 -08:00
duplicates_test.go
…
duplicates.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
epic_test.go
…
epic.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
errors.go
…
export_import_test.go
test(export): add test for tombstone inclusion in JSONL export (bd-yk8w)
2025-12-07 21:14:13 +11:00
export_integrity_integration_test.go
…
export_mtime_test.go
Introduce slog for structured daemon logging (bd-u2sc.4)
2025-12-23 13:46:26 -08:00
export_staleness_test.go
…
export_test.go
…
export.go
feat: add gate issue type and CLI commands for async coordination (bd-udsi)
2025-12-23 12:06:42 -08:00
external_ref_test.go
feat: add cross-project dependency support - config and external: prefix (bd-66w1, bd-om4a)
2025-12-21 23:08:00 -08:00
flags.go
bd create: support --description=- for stdin input
2025-12-19 01:47:03 -08:00
flush_manager_test.go
refactor: remove legacy autoflush code paths (bd-xsl9)
2025-12-23 01:56:19 -08:00
flush_manager.go
…
fork_protection_test.go
feat: auto-protect forks from committing upstream issue database
2025-12-18 18:56:59 -08:00
fork_protection.go
refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)
2025-12-22 21:15:41 -08:00
gate.go
Add daemon RPC support for gate commands (bd-likt)
2025-12-23 13:47:24 -08:00
git_sync_test.go
…
graph_test.go
fix(graph): pass subgraph to renderGraph to fix nil pointer crash
2025-12-20 01:59:31 -08:00
graph.go
Merge upstream/main into subtle-ux-improvements
2025-12-20 17:22:43 -08:00
helpers_test.go
…
hook.go
feat: implement molecular chemistry UX commands
2025-12-22 02:21:40 -08:00
hooks_test.go
feat(hooks): implement thin shim pattern (GH#615)
2025-12-20 02:38:56 -08:00
hooks.go
Merge upstream/main into subtle-ux-improvements
2025-12-20 17:22:43 -08:00
import_bug_test.go
…
import_cancellation_test.go
…
import_idempotent_test.go
…
import_mtime_test.go
…
import_multipart_id_test.go
fix: handle multi-hyphen prefixes correctly (GH#422)
2025-12-23 16:20:04 -08:00
import_profile_test.go
…
import_shared.go
refactor: remove all deletions.jsonl code (bd-fom)
2025-12-16 14:20:49 -08:00
import_uncommitted_test.go
…
import.go
refactor: remove legacy autoflush code paths (bd-xsl9)
2025-12-23 01:56:19 -08:00
info_test.go
refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)
2025-12-22 21:15:41 -08:00
info.go
chore: bump version to v0.35.0
2025-12-23 04:58:19 -08:00
init_contributor.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
init_hooks_test.go
feat: add Git worktree compatibility (PR #478)
2025-12-13 12:50:33 -08:00
init_team.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
init_test.go
fix(init): handle read-only gitignore gracefully in stealth mode (#663)
2025-12-20 16:43:43 -08:00
init.go
fix(stealth): use .git/info/exclude instead of global gitignore (GH#704)
2025-12-23 14:18:02 -08:00
integrity_content_test.go
…
integrity_test.go
refactor: remove all deletions.jsonl code (bd-fom)
2025-12-16 14:20:49 -08:00
integrity.go
refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)
2025-12-22 15:39:55 -08:00
jira_test.go
…
jira.go
refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)
2025-12-22 21:15:41 -08:00
jsonl_integrity_test.go
fix: resolve P2 sync noise and cleanup issues
2025-12-16 00:56:06 -08:00
label_test.go
…
label.go
feat: add bd ship command for cross-project capabilities (bd-eijl)
2025-12-21 23:11:48 -08:00
linear_test.go
feat: Linear Integration (#655)
2025-12-19 17:58:24 -08:00
linear.go
fix: misc improvements and dependency updates
2025-12-20 17:09:50 -08:00
list_test.go
…
list.go
feat: add gate issue type and CLI commands for async coordination (bd-udsi)
2025-12-23 12:06:42 -08:00
mail.go
fix(lint): add nosec for mail delegate exec.Command
2025-12-21 15:29:58 -08:00
main_test.go
refactor: remove legacy autoflush code paths (bd-xsl9)
2025-12-23 01:56:19 -08:00
main.go
refactor: remove legacy autoflush code paths (bd-xsl9)
2025-12-23 01:56:19 -08:00
markdown_test.go
…
markdown.go
fix: bd create -f now works with daemon mode (GH#719)
2025-12-22 23:30:08 -08:00
merge_security_test.go
…
merge.go
fix: misc improvements and dependency updates
2025-12-20 17:09:50 -08:00
migrate_hash_ids_test.go
…
migrate_hash_ids.go
refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)
2025-12-22 15:39:55 -08:00
migrate_issues.go
chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)
2025-12-22 21:30:57 -08:00
migrate_sync_test.go
test: replace manual os.Chdir with t.Chdir in tests (#457)
2025-12-04 11:21:43 -08:00
migrate_sync.go
fix: misc improvements and dependency updates
2025-12-20 17:09:50 -08:00
migrate_test.go
…
migrate_tombstones.go
refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)
2025-12-22 21:15:41 -08:00
migrate.go
Standardize error handling: use FatalError in compact.go, sync.go, migrate.go
2025-12-23 13:46:43 -08:00
mol_bond.go
fix(mol): respect --pour flag in bond operations (bd-l7y3)
2025-12-23 15:25:13 -08:00
mol_burn.go
fix: resolve all golangci-lint errors (#699)
2025-12-22 14:06:45 -08:00
mol_catalog.go
refactor(mol): split 1218-line mol.go into subcommand files
2025-12-21 11:43:43 -08:00
mol_current.go
refactor(doctor): consolidate maintenance commands + improve daemon startup
2025-12-22 20:21:30 -08:00
mol_distill.go
refactor(mol): split 1218-line mol.go into subcommand files
2025-12-21 11:43:43 -08:00
mol_run.go
bd mol run: add cross-database spawning support (gt-jsup)
2025-12-23 16:39:18 -08:00
mol_show.go
feat: add parallel step detection for molecules (bd-xo1o.4)
2025-12-23 03:57:08 -08:00
mol_spawn.go
fix(mol): respect --pour flag in bond operations (bd-l7y3)
2025-12-23 15:25:13 -08:00
mol_squash.go
fix: resolve all golangci-lint errors (#699)
2025-12-22 14:06:45 -08:00
mol_test.go
fix(mol): respect --pour flag in bond operations (bd-l7y3)
2025-12-23 15:25:13 -08:00
mol.go
feat: add dynamic molecule bonding with --ref flag (bd-xo1o.1)
2025-12-23 03:38:38 -08:00
nodb_test.go
test: replace manual os.Chdir with t.Chdir in tests (#457)
2025-12-04 11:21:43 -08:00
nodb.go
feat(jsonl): add omitempty to reduce JSONL bloat (beads-399)
2025-12-19 23:18:11 -08:00
onboard_test.go
refactor(onboard): simplify to minimal snippet pointing to bd prime
2025-12-18 11:48:02 -08:00
onboard.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
output_test.go
…
periodic_remote_sync_test.go
feat(daemon): add auto_pull config parameter for periodic remote sync
2025-12-22 18:47:18 -05:00
pin.go
feat: implement molecular chemistry UX commands
2025-12-22 02:21:40 -08:00
pour.go
fix(mol): respect --pour flag in bond operations (bd-l7y3)
2025-12-23 15:25:13 -08:00
prime_test.go
feat(prime): add --stealth flag for flush-only workflow
2025-12-03 18:08:33 -08:00
prime.go
fix: misc improvements and dependency updates
2025-12-20 17:09:50 -08:00
quick.go
fix: misc improvements and dependency updates
2025-12-20 17:09:50 -08:00
quickstart.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
readonly_test.go
…
ready_test.go
…
ready.go
fix: resolve golangci-lint errors
2025-12-23 05:10:38 -08:00
reinit_test.go
fix: make database_removal_scenario test more realistic
2025-12-23 00:04:55 -08:00
relate_test.go
Add tests for Decision 004 Phase 4 edge schema consolidation
2025-12-18 11:25:17 -08:00
relate.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
rename_prefix_repair_test.go
fix(rename-prefix): use hash IDs instead of sequential in --repair mode
2025-12-15 23:59:21 -08:00
rename_prefix_test.go
…
rename_prefix.go
refactor(doctor): consolidate maintenance commands + improve daemon startup
2025-12-22 20:21:30 -08:00
reopen_test.go
…
reopen.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
repair_deps_test.go
…
repo.go
fix: bd repo commands write to YAML and cleanup on remove (#683)
2025-12-22 01:26:45 -08:00
reset_test.go
feat(schema): add messaging fields for bd-kwro epic
2025-12-16 13:06:47 -08:00
reset.go
chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)
2025-12-22 21:30:57 -08:00
restore_test.go
test: replace manual os.Chdir with t.Chdir in tests (#457)
2025-12-04 11:21:43 -08:00
restore.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
sandbox_test.go
…
sandbox_unix.go
…
sandbox_windows.go
…
scripttest_test.go
…
search_test.go
…
search.go
bd sync: 2025-12-23 13:49:07
2025-12-23 14:39:07 -08:00
setup.go
fix: misc improvements and dependency updates
2025-12-20 17:09:50 -08:00
ship.go
feat: add bd ship command for cross-project capabilities (bd-eijl)
2025-12-21 23:11:48 -08:00
show.go
bd sync: 2025-12-23 13:49:07
2025-12-23 14:39:07 -08:00
simple_helpers_test.go
…
snapshot_manager.go
chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)
2025-12-22 21:30:57 -08:00
stale_test.go
…
stale.go
Merge upstream/main into subtle-ux-improvements
2025-12-20 17:22:43 -08:00
staleness.go
…
status_test.go
refactor(status): merge stats command into status (GH#644)
2025-12-20 13:14:39 -08:00
status.go
Merge upstream/main into subtle-ux-improvements
2025-12-20 17:22:43 -08:00
sync_branch_priority_test.go
fix(sync): respect sync.branch config when no upstream tracking (#640)
2025-12-19 17:52:27 -08:00
sync_branch.go
Split sync.go into modular files (bd-u2sc.3)
2025-12-23 13:48:01 -08:00
sync_check.go
Split sync.go into modular files (bd-u2sc.3)
2025-12-23 13:48:01 -08:00
sync_export.go
Split sync.go into modular files (bd-u2sc.3)
2025-12-23 13:48:01 -08:00
sync_import.go
Split sync.go into modular files (bd-u2sc.3)
2025-12-23 13:48:01 -08:00
sync_local_only_test.go
test: replace manual os.Chdir with t.Chdir in tests (#457)
2025-12-04 11:21:43 -08:00
sync_merge_test.go
…
sync_test.go
refactor: remove all deletions.jsonl code (bd-fom)
2025-12-16 14:20:49 -08:00
sync.go
Split sync.go into modular files (bd-u2sc.3)
2025-12-23 13:48:01 -08:00
template_test.go
feat: add dynamic molecule bonding with --ref flag (bd-xo1o.1)
2025-12-23 03:38:38 -08:00
template.go
feat: add dynamic molecule bonding with --ref flag (bd-xo1o.1)
2025-12-23 03:38:38 -08:00
test_helpers_test.go
feat: add Git worktree compatibility (PR #478)
2025-12-13 12:50:33 -08:00
test_wait_helper.go
…
thanks.go
refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)
2025-12-22 15:39:55 -08:00
thread_test.go
refactor: rename Ephemeral → Wisp (Steam Engine metaphor)
2025-12-21 15:22:45 -08:00
tips_example_test.go
…
tips_test.go
…
tips.go
chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)
2025-12-22 21:30:57 -08:00
undefer.go
Merge upstream/main into subtle-ux-improvements
2025-12-20 17:22:43 -08:00
unpin.go
refactor(ui): standardize on lipgloss semantic color system
2025-12-20 17:09:50 -08:00
upgrade.go
fix: misc improvements and dependency updates
2025-12-20 17:09:50 -08:00
version_test.go
fix: Add commit and branch to bd version output (github #503)
2025-12-13 10:04:01 +11:00
version_tracking_test.go
test: replace manual os.Chdir with t.Chdir in tests (#457)
2025-12-04 11:21:43 -08:00
version_tracking.go
chore: remove obsolete BD_GUIDE.md references
2025-12-20 20:50:33 -08:00
version.go
chore: bump version to v0.35.0
2025-12-23 04:58:19 -08:00
wisp.go
refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)
2025-12-22 15:39:55 -08:00
worktree_daemon_test.go
Auto-disable daemon in git worktrees for safety (#567)
2025-12-16 00:06:19 -08:00
worktree_test.go
…
worktree.go
Auto-disable daemon in git worktrees for safety (#567)
2025-12-16 00:06:19 -08:00