Peter Chanthamynavong 362b07d74f fix(init): ensure sync branch persistence on init ...

Problem:
- Sync branch setup occurred before the config file was initialized
- Persistence only targeted the database, leading to loss on re-init

Solution:
- Reorder initialization to create the config file before sync setup
- Synchronize sync branch state to both config file and database

Impact:
- Settings are preserved across re-initialization and DB clears
- Better consistency between file and database state

Fixes: #927 (Bug 3)

2026-01-06 15:22:15 -08:00

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