Ryan 3c08e5eb9d DOCTOR IMPROVEMENTS: visual improvements/grouping + add comprehensive tests + fix gosec warnings (#656)
* test(doctor): add comprehensive tests for fix and check functions

Add edge case tests, e2e tests, and improve test coverage for:
- database_test.go: database integrity and sync checks
- git_test.go: git hooks, merge driver, sync branch tests
- gitignore_test.go: gitignore validation
- prefix_test.go: ID prefix handling
- fix/fix_test.go: fix operations
- fix/e2e_test.go: end-to-end fix scenarios
- fix/fix_edge_cases_test.go: edge case handling

* docs: add testing philosophy and anti-patterns guide

- Create TESTING_PHILOSOPHY.md covering test pyramid, priority matrix,
  what NOT to test, and 5 anti-patterns with code examples
- Add cross-reference from README_TESTING.md
- Document beads-specific guidance (well-covered areas vs gaps)
- Include target metrics (test-to-code ratio, execution time targets)

* chore: revert .beads/ to upstream/main state

* refactor(doctor): add category grouping and Ayu theme colors

- Add Category field to DoctorCheck for organizing checks by type
- Define category constants: Core, Git, Runtime, Data, Integration, Metadata
- Update thanks command to use shared Ayu color palette from internal/ui
- Simplify test fixtures by removing redundant test cases

* fix(doctor): prevent test fork bomb and fix test failures

- Add ErrTestBinary guard in getBdBinary() to prevent tests from
  recursively executing the test binary when calling bd subcommands
- Update claude_test.go to use new check names (CLI Availability,
  Prime Documentation)
- Fix syncbranch test path comparison by resolving symlinks
  (/var vs /private/var on macOS)
- Fix permissions check to use exact comparison instead of bitmask
- Fix UntrackedJSONL to use git commit --only to preserve staged changes
- Fix MergeDriver edge case test by making both .git dir and config
  read-only
- Add skipIfTestBinary helper for E2E tests that need real bd binary

* test(doctor): skip read-only config test in CI environments

GitHub Actions containers may have CAP_DAC_OVERRIDE or similar
capabilities that allow writing to read-only files, causing
the test to fail. Skip the test when CI=true or GITHUB_ACTIONS=true.
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bd - Beads

Distributed, git-backed graph issue tracker for AI agents.

License Go Report Card Release npm version PyPI

Beads provides a persistent, structured memory for coding agents. It replaces messy markdown plans with a dependency-aware graph, allowing agents to handle long-horizon tasks without losing context.

Quick Start

# Install (macOS/Linux)
curl -fsSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash

# Initialize (Humans run this once)
bd init

# Tell your agent
echo "Use 'bd' for task tracking" >> AGENTS.md

🛠 Features

  • Git as Database: Issues stored as JSONL in .beads/. Versioned, branched, and merged like code.
  • Agent-Optimized: JSON output, dependency tracking, and auto-ready task detection.
  • Zero Conflict: Hash-based IDs (bd-a1b2) prevent merge collisions in multi-agent/multi-branch workflows.
  • Invisible Infrastructure: SQLite local cache for speed; background daemon for auto-sync.
  • Compaction: Semantic "memory decay" summarizes old closed tasks to save context window.

📖 Essential Commands

Command Action
bd ready List tasks with no open blockers.
bd create "Title" -p 0 Create a P0 task.
bd dep add <child> <parent> Link tasks (blocks, related, parent-child).
bd show <id> View task details and audit trail.
bd quickstart Interactive guide for AI agents.

🔗 Hierarchy & Workflow

Beads supports hierarchical IDs for epics:

  • bd-a3f8 (Epic)
  • bd-a3f8.1 (Task)
  • bd-a3f8.1.1 (Sub-task)

Stealth Mode: Run bd init --stealth to use Beads locally without committing files to the main repo. Perfect for personal use on shared projects.

📦 Installation

  • npm: npm install -g @beads/bd
  • Homebrew: brew install steveyegge/beads/bd
  • Go: go install github.com/steveyegge/beads/cmd/bd@latest

Requirements: Linux (glibc 2.32+), macOS, or Windows.

🌐 Community Tools

  • beads_viewer - Keyboard-driven terminal UI with kanban board, insights panel, and graph view. Built by @Dicklesworthstone.
  • beads.el - Emacs UI to browse, edit, and manage beads. Built by @ctietze.
  • beads-ui - Local web interface with live updates and kanban board. npx beads-ui start. Built by @mantoni.
  • bdui - Real-time terminal UI with tree view, dependency graph, and vim-style navigation. Built by @assimelha.
  • perles - Terminal UI with BQL (Beads Query Language) and multi-view kanban. Built by @zjrosen.
  • vscode-beads - VS Code extension with issues panel and daemon management. Built by @jdillon.

📝 Documentation

Description
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Readme MIT 103 MiB
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Shell 0.7%
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