Steve Yegge f28785d2dc feat(formula): support needs and waits_for fields, add --prefix flag ...

- bd-hr39: Add `needs` field to Step as alias for depends_on. Converts
  to blocking dependencies between sibling steps during cooking.

- bd-j4cr: Add `waits_for` field to Step. Values: all-children or
  any-children. Preserved as gate:<value> label during cooking.

- bd-47qx: Add --prefix flag to bd cook command to prepend a prefix
  to proto IDs, enabling use of project prefixes like gt-.

Includes validation, dry-run output, and comprehensive tests.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2025-12-24 13:59:38 -08:00

..

doctor

feat(deps): detect/prevent child→parent dependency anti-pattern (bd-nim5)

2025-12-24 13:03:27 -08:00

setup

Add tests for setup package (28.4% → 53.8% coverage)

2025-12-23 22:40:16 -08:00

templates/hooks

chore: bump version to v0.35.0

2025-12-23 04:58:19 -08:00

testdata

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

.gitattributes

…

@AGENTS.md

…

activity_test.go

fix: emit rich mutation events for status changes (bd-313v)

2025-12-23 04:16:26 -08:00

activity.go

fix: emit rich mutation events for status changes (bd-313v)

2025-12-23 04:16:26 -08:00

AGENTS.md

…

audit.go

feat(audit): add append-only agent audit trail (.beads/interactions.jsonl)

2025-12-20 03:24:51 -08:00

autoflush.go

fix(json): audit and standardize JSON output across commands (bd-au0.7)

2025-12-24 00:10:14 -08:00

autoimport_test.go

refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)

2025-12-22 21:15:41 -08:00

autoimport.go

Refactor duplicate JSONL-from-git parsing code (bd-y2v)

2025-12-23 22:41:05 -08:00

autostart_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

cleanup.go

feat: consolidate maintenance commands into bd doctor --fix (bd-bqcc)

2025-12-23 01:31:18 -08:00

cli_fast_test.go

refactor: remove legacy autoflush code paths (bd-xsl9)

2025-12-23 01:56:19 -08:00

comments_test.go

…

comments.go

fix(json): standardize JSON output for errors and empty arrays (bd-au0.7)

2025-12-24 00:07:52 -08:00

compact_test.go

feat(compact): Add --prune mode for standalone tombstone pruning (bd-c7y5)

2025-12-24 00:08:10 -08:00

compact.go

feat(compact): Add --prune mode for standalone tombstone pruning (bd-c7y5)

2025-12-24 00:08:10 -08:00

config_test.go

…

config.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

cook.go

feat(formula): support needs and waits_for fields, add --prefix flag

2025-12-24 13:59:38 -08:00

count.go

feat: add gate issue type and CLI commands for async coordination (bd-udsi)

2025-12-23 12:06:42 -08:00

create_form_test.go

…

create_form.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

create_test.go

…

create.go

feat: add gate issue type and CLI commands for async coordination (bd-udsi)

2025-12-23 12:06:42 -08:00

daemon_autoimport_test.go

…

daemon_autostart.go

chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)

2025-12-22 21:30:57 -08:00

daemon_basics_test.go

…

daemon_config.go

…

daemon_crash_test.go

…

daemon_debouncer_test.go

…

daemon_debouncer.go

…

daemon_event_loop.go

feat(daemon): add auto_pull config parameter for periodic remote sync

2025-12-22 18:47:18 -05:00

daemon_health_freebsd.go

…

daemon_health_unix.go

…

daemon_health_wasm.go

…

daemon_health_windows.go

…

daemon_integration_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemon_lifecycle.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemon_local_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemon_lock_test.go

…

daemon_lock_unix.go

…

daemon_lock_wasm.go

…

daemon_lock_windows.go

…

daemon_lock.go

chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)

2025-12-22 21:30:57 -08:00

daemon_logger.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemon_parent_test.go

…

daemon_rotation_test.go

…

daemon_server.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemon_sync_branch_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemon_sync_branch.go

fix(sync): respect sync.remote config in daemon sync operations (#736)

2025-12-24 12:43:18 -08:00

daemon_sync_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemon_sync.go

refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)

2025-12-22 15:39:55 -08:00

daemon_test.go

…

daemon_unix_test.go

…

daemon_unix.go

…

daemon_wasm.go

…

daemon_watcher_platform_test.go

…

daemon_watcher_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemon_watcher.go

fix(daemon): deduplicate file and git ref change log messages

2025-12-22 19:02:42 -05:00

daemon_windows.go

…

daemon.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

daemons_test.go

…

daemons.go

refactor(cmd): replace map[string]interface{} with typed JSON response structs (bd-u2sc.1)

2025-12-22 15:48:36 -08:00

defer.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

delete_rpc_test.go

test(delete): Add comprehensive tests for deleteViaDaemon RPC client (bd-dtl8)

2025-12-24 00:07:55 -08:00

delete_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

delete.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

deletion_tracking_test.go

…

deletion_tracking.go

chore: remove dead deprecated wrapper functions

2025-12-21 15:50:10 -08:00

dep_test.go

feat(deps): detect/prevent child→parent dependency anti-pattern (bd-nim5)

2025-12-24 13:03:27 -08:00

dep.go

feat(deps): detect/prevent child→parent dependency anti-pattern (bd-nim5)

2025-12-24 13:03:27 -08:00

detect_pollution.go

feat: consolidate maintenance commands into bd doctor --fix (bd-bqcc)

2025-12-23 01:31:18 -08:00

direct_mode_test.go

refactor: remove legacy autoflush code paths (bd-xsl9)

2025-12-23 01:56:19 -08:00

direct_mode.go

…

docs.md

…

doctor_test.go

release: v0.34.0

2025-12-22 03:18:55 -08:00

doctor.go

feat(deps): detect/prevent child→parent dependency anti-pattern (bd-nim5)

2025-12-24 13:03:27 -08:00

duplicate.go

chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)

2025-12-22 21:30:57 -08:00

duplicates_test.go

…

duplicates.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

epic_test.go

…

epic.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

errors.go

fix(json): standardize JSON output for errors and empty arrays (bd-au0.7)

2025-12-24 00:07:52 -08:00

export_import_test.go

…

export_integrity_integration_test.go

…

export_mtime_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

export_staleness_test.go

…

export_test.go

…

export.go

feat(export): add --priority exact match filter (bd-au0.6)

2025-12-24 00:06:51 -08:00

external_ref_test.go

feat: add cross-project dependency support - config and external: prefix (bd-66w1, bd-om4a)

2025-12-21 23:08:00 -08:00

flags.go

…

flush_manager_test.go

refactor: remove legacy autoflush code paths (bd-xsl9)

2025-12-23 01:56:19 -08:00

flush_manager.go

…

fork_protection_test.go

…

fork_protection.go

refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)

2025-12-22 21:15:41 -08:00

gate.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

git_sync_test.go

…

graph_test.go

…

graph.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

helpers_test.go

…

hook.go

feat: implement molecular chemistry UX commands

2025-12-22 02:21:40 -08:00

hooks_test.go

…

hooks.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

import_bug_test.go

…

import_cancellation_test.go

…

import_idempotent_test.go

…

import_mtime_test.go

…

import_multipart_id_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

import_profile_test.go

…

import_shared.go

…

import_uncommitted_test.go

…

import.go

refactor: remove legacy autoflush code paths (bd-xsl9)

2025-12-23 01:56:19 -08:00

info_test.go

refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)

2025-12-22 21:15:41 -08:00

info.go

refactor(mol): remove bd mol spawn - use pour/wisp only (bd-8y9t)

2025-12-24 12:52:47 -08:00

init_contributor.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

init_hooks_test.go

…

init_team.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

init_test.go

fix(init): handle read-only gitignore gracefully in stealth mode (#663)

2025-12-20 16:43:43 -08:00

init.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

integrity_content_test.go

…

integrity_test.go

…

integrity.go

refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)

2025-12-22 15:39:55 -08:00

jira_test.go

…

jira.go

refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)

2025-12-22 21:15:41 -08:00

jsonl_integrity_test.go

…

label_test.go

…

label.go

feat: add bd ship command for cross-project capabilities (bd-eijl)

2025-12-21 23:11:48 -08:00

linear_test.go

…

linear.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

list_test.go

…

list.go

feat(list): add --pretty and --watch flags for built-in viewer (#729)

2025-12-24 12:35:57 -08:00

mail.go

fix(lint): add nosec for mail delegate exec.Command

2025-12-21 15:29:58 -08:00

main_test.go

refactor: remove legacy autoflush code paths (bd-xsl9)

2025-12-23 01:56:19 -08:00

main.go

feat(config): add override notification for config parameters (#731)

2025-12-24 12:35:54 -08:00

markdown_test.go

…

markdown.go

fix: bd create -f now works with daemon mode (GH#719)

2025-12-22 23:30:08 -08:00

merge_security_test.go

…

merge.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

migrate_hash_ids_test.go

…

migrate_hash_ids.go

refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)

2025-12-22 15:39:55 -08:00

migrate_issues.go

chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)

2025-12-22 21:30:57 -08:00

migrate_sync_test.go

…

migrate_sync.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

migrate_test.go

…

migrate_tombstones.go

refactor: consolidate duplicate path-finding utilities (bd-74w1, bd-4nqq)

2025-12-22 21:15:41 -08:00

migrate.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

mol_bond.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

mol_burn.go

fix: resolve all golangci-lint errors (#699)

2025-12-22 14:06:45 -08:00

mol_catalog.go

refactor(mol): remove bd mol spawn - use pour/wisp only (bd-8y9t)

2025-12-24 12:52:47 -08:00

mol_current.go

refactor(doctor): consolidate maintenance commands + improve daemon startup

2025-12-22 20:21:30 -08:00

mol_distill.go

refactor(mol): remove bd mol spawn - use pour/wisp only (bd-8y9t)

2025-12-24 12:52:47 -08:00

mol_run.go

fix: address CI lint errors (gosec, errcheck, unparam, duplicate tests) (#730)

2025-12-24 12:35:32 -08:00

mol_show.go

feat: add parallel step detection for molecules (bd-xo1o.4)

2025-12-23 03:57:08 -08:00

mol_squash.go

fix: resolve all golangci-lint errors (#699)

2025-12-22 14:06:45 -08:00

mol_test.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

mol.go

refactor(mol): remove bd mol spawn - use pour/wisp only (bd-8y9t)

2025-12-24 12:52:47 -08:00

nodb_test.go

…

nodb.go

…

onboard_test.go

…

onboard.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

output_test.go

…

periodic_remote_sync_test.go

feat(daemon): add auto_pull config parameter for periodic remote sync

2025-12-22 18:47:18 -05:00

pin.go

feat: implement molecular chemistry UX commands

2025-12-22 02:21:40 -08:00

pour.go

refactor(mol): remove bd mol spawn - use pour/wisp only (bd-8y9t)

2025-12-24 12:52:47 -08:00

prime_test.go

…

prime.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

quick.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

quickstart.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

readonly_test.go

…

ready_test.go

…

ready.go

fix: resolve golangci-lint errors

2025-12-23 05:10:38 -08:00

reinit_test.go

fix: make database_removal_scenario test more realistic

2025-12-23 00:04:55 -08:00

relate_test.go

…

relate.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

rename_prefix_repair_test.go

…

rename_prefix_test.go

…

rename_prefix.go

refactor(doctor): consolidate maintenance commands + improve daemon startup

2025-12-22 20:21:30 -08:00

reopen_test.go

…

reopen.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

repair_deps_test.go

…

repo.go

fix: bd repo commands write to YAML and cleanup on remove (#683)

2025-12-22 01:26:45 -08:00

reset_test.go

…

reset.go

chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)

2025-12-22 21:30:57 -08:00

restore_test.go

…

restore.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

sandbox_test.go

…

sandbox_unix.go

…

sandbox_windows.go

…

scripttest_test.go

…

search_test.go

…

search.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

setup.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

ship.go

feat: add bd ship command for cross-project capabilities (bd-eijl)

2025-12-21 23:11:48 -08:00

show.go

fix(json): standardize JSON output for errors and empty arrays (bd-au0.7)

2025-12-24 00:07:52 -08:00

simple_helpers_test.go

…

snapshot_manager.go

chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)

2025-12-22 21:30:57 -08:00

stale_test.go

fix(json): audit and standardize JSON output across commands (bd-au0.7)

2025-12-24 00:10:14 -08:00

stale.go

fix(json): audit and standardize JSON output across commands (bd-au0.7)

2025-12-24 00:10:14 -08:00

staleness.go

…

status_test.go

refactor(status): merge stats command into status (GH#644)

2025-12-20 13:14:39 -08:00

status.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

sync_branch_priority_test.go

…

sync_branch.go

fix: address CI lint errors (gosec, errcheck, unparam, duplicate tests) (#730)

2025-12-24 12:35:32 -08:00

sync_check.go

fix: address CI lint errors (gosec, errcheck, unparam, duplicate tests) (#730)

2025-12-24 12:35:32 -08:00

sync_export.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

sync_import.go

fix: address CI lint errors (gosec, errcheck, unparam, duplicate tests) (#730)

2025-12-24 12:35:32 -08:00

sync_local_only_test.go

…

sync_merge_test.go

…

sync_test.go

…

sync.go

bd sync: 2025-12-23 23:38:57

2025-12-24 00:06:41 -08:00

template_test.go

feat: add dynamic molecule bonding with --ref flag (bd-xo1o.1)

2025-12-23 03:38:38 -08:00

template.go

Fix template commands failing with daemon mode (bd-indn)

2025-12-23 22:43:04 -08:00

test_helpers_test.go

…

test_wait_helper.go

…

thanks.go

refactor(cmd): migrate sort.Slice to slices.SortFunc (bd-u2sc.2)

2025-12-22 15:39:55 -08:00

thread_test.go

refactor: rename Ephemeral → Wisp (Steam Engine metaphor)

2025-12-21 15:22:45 -08:00

tips_example_test.go

…

tips_test.go

…

tips.go

chore: code health review - test fix and error comments (bd-9g1z, bd-ork0)

2025-12-22 21:30:57 -08:00

undefer.go

Merge upstream/main into subtle-ux-improvements

2025-12-20 17:22:43 -08:00

unpin.go

refactor(ui): standardize on lipgloss semantic color system

2025-12-20 17:09:50 -08:00

upgrade.go

fix: misc improvements and dependency updates

2025-12-20 17:09:50 -08:00

version_test.go

…

version_tracking_test.go

…

version_tracking.go

chore: remove obsolete BD_GUIDE.md references

2025-12-20 20:50:33 -08:00

version.go

chore: bump version to v0.35.0

2025-12-23 04:58:19 -08:00

wisp.go

refactor(mol): remove bd mol spawn - use pour/wisp only (bd-8y9t)

2025-12-24 12:52:47 -08:00

worktree_daemon_test.go

…

worktree_test.go

…

worktree.go

…