ruby 718fc49776 fix(sqlite): add retry logic to transaction entry points (GH#1272) ...

Update withTx to use BEGIN IMMEDIATE with exponential backoff retry
on SQLITE_BUSY errors. This prevents "database is locked" failures
during concurrent operations (daemon + CLI, multi-agent workflows).

Changes:
- withTx now uses beginImmediateWithRetry (same pattern as RunInTransaction)
- Add dbExecutor interface for helper functions that work with both
  *sql.Tx and *sql.Conn
- Update all withTx callers to use *sql.Conn
- Refactor DeleteIssue to use withTx (fixes the specific error in auto-import)
- Update markIssuesDirtyTx to accept dbExecutor interface

Affected paths:
- MarkIssuesDirty, ClearDirtyIssuesByID (dirty.go)
- AddDependency, RemoveDependency (dependencies.go)
- executeLabelOperation (labels.go)
- AddComment (events.go)
- ApplyCompaction (compact.go)
- DeleteIssue (queries.go)

Note: Some direct BeginTx calls in queries.go (CloseIssue, UpdateIssue,
ReopenIssue, DeleteIssues) still use the old pattern and could be
refactored in a follow-up.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2026-01-22 18:30:48 -08:00

..

migrations

fix: add TypeRig constant and IsBuiltIn method (GH#1002)

2026-01-10 23:46:44 -08:00

adaptive_e2e_test.go

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adaptive_length_test.go

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adaptive_length.go

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batch_ops_test.go

fix(sqlite): prevent FK constraint failure on batch create (GH#956)

2026-01-10 22:02:03 -08:00

batch_ops.go

fix(storage): use strict INSERT for batch issue creation (GH#956)

2026-01-12 19:42:04 -08:00

batch_test.go

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bench_helpers_test.go

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blocked_cache_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

blocked_cache.go

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child_counters_migration_test.go

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child_counters_test.go

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child_id_test.go

fix: respect hierarchy.max-depth config setting (GH#995) (#997)

2026-01-10 13:36:52 -08:00

collision_test.go

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collision.go

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comments_test.go

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comments.go

/{cmd,docs,internal}: support import export for dolt backends

2026-01-21 13:13:24 -08:00

compact_bench_test.go

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compact_test.go

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compact.go

fix(sqlite): add retry logic to transaction entry points (GH#1272)

2026-01-22 18:30:48 -08:00

config.go

fix(daemon): prevent zombie state after database file replacement (#1213)

2026-01-21 22:46:59 -08:00

cycle_bench_test.go

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cycle_detection_test.go

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delete_test.go

fix: Mark dependent issues dirty when deleting to prevent orphan deps in JSONL

2026-01-16 12:27:36 -08:00

dependencies_test.go

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dependencies.go

fix(sqlite): add retry logic to transaction entry points (GH#1272)

2026-01-22 18:30:48 -08:00

dirty_helpers.go

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dirty_test.go

…

dirty.go

fix(sqlite): add retry logic to transaction entry points (GH#1272)

2026-01-22 18:30:48 -08:00

epics_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

epics.go

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errors_test.go

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errors.go

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events_helpers.go

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events_test.go

feat: add session_id field to issue close/update mutations (bd-tksk)

2025-12-31 13:14:15 -08:00

events.go

fix(sqlite): add retry logic to transaction entry points (GH#1272)

2026-01-22 18:30:48 -08:00

external_deps.go

fix(lint): address gosec, misspell, and unparam warnings

2026-01-05 22:06:52 -08:00

external_ref_test.go

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freshness_test.go

fix(daemon): prevent zombie state after database file replacement (#1213)

2026-01-21 22:46:59 -08:00

freshness_unix.go

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freshness_windows.go

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freshness.go

fix(daemon): prevent zombie state after database file replacement (#1213)

2026-01-21 22:46:59 -08:00

gate_no_daemon_test.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

graph_links_test.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

hash_id_test.go

…

hash_ids.go

fix(storage): add reconnectMu RLock protection to prevent race condition (#1054)

2026-01-12 18:29:42 -08:00

hash.go

fix(storage): add reconnectMu RLock protection to prevent race condition (#1054)

2026-01-12 18:29:42 -08:00

ids_test.go

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ids.go

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import_tx.go

/{cmd,docs,internal}: support import export for dolt backends

2026-01-21 13:13:24 -08:00

inode_unix.go

fix(ci): address Windows test failures and timeout

2026-01-06 12:59:26 -08:00

inode_windows.go

fix(ci): address Windows test failures and timeout

2026-01-06 12:59:26 -08:00

issues.go

fix(storage): use strict INSERT for batch issue creation (GH#956)

2026-01-12 19:42:04 -08:00

labels_test.go

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labels.go

fix(sqlite): add retry logic to transaction entry points (GH#1272)

2026-01-22 18:30:48 -08:00

migration_invariants_test.go

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migration_invariants.go

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migrations_template_pinned_regression_test.go

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migrations_test.go

fix: add missing crystallizes column to SELECT queries and remove duplicate

2026-01-10 23:55:16 -08:00

migrations.go

feat: consolidate schema changes from crew directories

2026-01-10 22:38:04 -08:00

multirepo_export.go

feat(context): centralize RepoContext API for git operations (#1102)

2026-01-15 07:55:08 -08:00

multirepo_test.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

multirepo.go

feat(multirepo): trust non-built-in types during hydration (bd-9ji4z)

2026-01-09 14:12:48 -08:00

orphan_handling_test.go

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prefix_validation_test.go

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queries.go

fix(sqlite): add retry logic to transaction entry points (GH#1272)

2026-01-22 18:30:48 -08:00

readonly_test.go

fix: read operations no longer modify database file (GH#804)

2025-12-30 16:47:38 -08:00

ready_test.go

fix(ready): exclude molecule steps from bd ready by default (#1246)

2026-01-21 19:30:15 -08:00

ready.go

fix(ready): exclude molecule steps from bd ready by default (#1246)

2026-01-21 19:30:15 -08:00

rename_dependency_prefix_test.go

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resurrection_test.go

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resurrection.go

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schema_probe_test.go

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schema_probe.go

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schema.go

fix: add missing crystallizes column to SELECT queries and remove duplicate

2026-01-10 23:55:16 -08:00

sqlite_bench_test.go

bench(sqlite): add isolated cache rebuild benchmarks (bd-zw72)

2026-01-02 17:30:58 -08:00

sqlite_test.go

feat(types): remove Gas Town types from core built-in types

2026-01-17 05:07:11 -08:00

sqlite.go

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store_wsl_test.go

fix(GH#1224): detect Docker Desktop bind mounts in WSL2 and disable WAL mode

2026-01-21 16:53:49 -08:00

store.go

fix(daemon): prevent zombie state after database file replacement (#1213)

2026-01-21 22:46:59 -08:00

test_helpers.go

fix(ready): exclude molecule steps from bd ready by default (#1246)

2026-01-21 19:30:15 -08:00

tombstone_test.go

fix(create): allow creating issues with explicit ID that matches tombstone (bd-0gm4r)

2026-01-14 20:36:47 -08:00

transaction_test.go

refactor(types): remove Gas Town type constants from beads core (bd-w2zz4)

2026-01-21 10:36:59 -08:00

transaction.go

Fix PrefixOverride not respected in transaction storage layer (#1257)

2026-01-22 13:04:52 -08:00

underlying_db_test.go

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util_test.go

fix(sqlite): add retry logic to transaction entry points (GH#1272)

2026-01-22 18:30:48 -08:00

util.go

fix(sqlite): add retry logic to transaction entry points (GH#1272)

2026-01-22 18:30:48 -08:00

validators_test.go

fix: repair test build failures in types and sqlite packages

2026-01-10 22:00:32 -08:00

validators.go

feat(types): add "enhancement" as alias for "feature" type

2026-01-16 15:44:33 -08:00