Charles P. Cross 82cbd98e50 fix(daemon): include tombstones in exportToJSONLWithStore for sync propagation (#696)
* fix(daemon): include tombstones in exportToJSONLWithStore for sync propagation

The daemon's exportToJSONLWithStore() function was using an empty
IssueFilter which defaults to IncludeTombstones: false. This caused
deleted issues (tombstones) to be excluded from JSONL exports during
daemon sync cycles.

Bug scenario:
1. User runs `bd delete <issue>` with daemon active
2. Database correctly marks issue as tombstone
3. Main .beads/issues.jsonl correctly shows status:"tombstone"
4. But sync branch worktree JSONL still showed status:"open"
5. Other clones would not see the deletion

The fix adds IncludeTombstones: true to match the behavior of
exportToJSONL() in sync.go, ensuring tombstones propagate to other
clones and prevent resurrection of deleted issues.

Adds regression test TestExportToJSONLWithStore_IncludesTombstones
that verifies tombstones are included in daemon JSONL exports.

* fix: resolve all golangci-lint errors (cherry-pick from fix/linting-errors)

Cherry-picked linting fixes to ensure CI passes.

---------

Co-authored-by: Charles P. Cross <cpdata@users.noreply.github.com>
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bd - Beads

Distributed, git-backed graph issue tracker for AI agents.

License Go Report Card Release npm version PyPI

Beads provides a persistent, structured memory for coding agents. It replaces messy markdown plans with a dependency-aware graph, allowing agents to handle long-horizon tasks without losing context.

Quick Start

# Install (macOS/Linux)
curl -fsSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash

# Initialize (Humans run this once)
bd init

# Tell your agent
echo "Use 'bd' for task tracking" >> AGENTS.md

🛠 Features

  • Git as Database: Issues stored as JSONL in .beads/. Versioned, branched, and merged like code.
  • Agent-Optimized: JSON output, dependency tracking, and auto-ready task detection.
  • Zero Conflict: Hash-based IDs (bd-a1b2) prevent merge collisions in multi-agent/multi-branch workflows.
  • Invisible Infrastructure: SQLite local cache for speed; background daemon for auto-sync.
  • Compaction: Semantic "memory decay" summarizes old closed tasks to save context window.

📖 Essential Commands

Command Action
bd ready List tasks with no open blockers.
bd create "Title" -p 0 Create a P0 task.
bd dep add <child> <parent> Link tasks (blocks, related, parent-child).
bd show <id> View task details and audit trail.
bd quickstart Interactive guide for AI agents.

🔗 Hierarchy & Workflow

Beads supports hierarchical IDs for epics:

  • bd-a3f8 (Epic)
  • bd-a3f8.1 (Task)
  • bd-a3f8.1.1 (Sub-task)

Stealth Mode: Run bd init --stealth to use Beads locally without committing files to the main repo. Perfect for personal use on shared projects.

📦 Installation

  • npm: npm install -g @beads/bd
  • Homebrew: brew install steveyegge/beads/bd
  • Go: go install github.com/steveyegge/beads/cmd/bd@latest

Requirements: Linux (glibc 2.32+), macOS, or Windows.

🌐 Community Tools

  • beads_viewer - Keyboard-driven terminal UI with kanban board, insights panel, and graph view. Built by @Dicklesworthstone.
  • beads.el - Emacs UI to browse, edit, and manage beads. Built by @ctietze.
  • beads-ui - Local web interface with live updates and kanban board. npx beads-ui start. Built by @mantoni.
  • bdui - Real-time terminal UI with tree view, dependency graph, and vim-style navigation. Built by @assimelha.
  • perles - Terminal UI with BQL (Beads Query Language) and multi-view kanban. Built by @zjrosen.
  • vscode-beads - VS Code extension with issues panel and daemon management. Built by @jdillon.

📝 Documentation

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